KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:08 2014 Check: 00 .. Name: ENSTTRP00000013419/1-1017 Len: 1308 Check: 2771 Weight: 1.00 Name: ENSP00000364687/1-1210 Len: 1308 Check: 2755 Weight: 1.00 Name: ENSBTAP00000007456/1-1272 Len: 1308 Check: 7007 Weight: 1.00 Name: bmy_03128T0/1-1244 Len: 1308 Check: 727 Weight: 1.00 Name: BACU015883/1-1191 Len: 1308 Check: 3124 Weight: 1.00 // 1 50 ENSTTRP00000013419/1-1017 ---------- ---------- ---------- ---------- ---------- ENSP00000364687/1-1210 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007456/1-1272 ---------- ---------- ---------- ------TRGR PPGWGTAGAG bmy_03128T0/1-1244 RGLGDKGGEA RAAGRRGRGR GTEAPPPPPP LFSAPEMRGL PRGRGLMRAR BACU015883/1-1191 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013419/1-1017 ---------- ---------- ---------- ---------- ---------- ENSP00000364687/1-1210 -------MAA AAGA------ ---------- ---------- ---------- ENSBTAP00000007456/1-1272 GVGARGPRAA PPGSRGRGRG GAHRGRGRPR SLLSLPRAQA SWAPQLPTGL bmy_03128T0/1-1244 GRG----RAA PPGSRGRGRG GPHRGRGRPR SLLSLPRAQA SWAPQLPTGL BACU015883/1-1191 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013419/1-1017 ---------- ---------- ---------- ---------- ---------- ENSP00000364687/1-1210 ----AAAAAA EGEAPAEMGA LLLEKETRGA TERVHGSLGD TPRSEETLPK ENSBTAP00000007456/1-1272 TSPPIPCVPS QGEAPAEMGA LVLEKEPRGA TERVHGSLGD TSRSEETLPK bmy_03128T0/1-1244 TSSPIPCVPS QGEAPAEMGA LVLEKEPRGA TERVHGSLGD TPRSEEILPK BACU015883/1-1191 ---------- -------MGA LVLEKEPRGA TERVHGSLGD TPRSEEILPK 151 200 ENSTTRP00000013419/1-1017 ---------- ---------- ---------- ---------- ---------- ENSP00000364687/1-1210 ATPDSLEPAG PSSPASVTVT VGDEGADTPV GATPLIGDES ENLEGDGDLR ENSBTAP00000007456/1-1272 ANPDSLETAG PSSPASVTVT VGDEGADTPV GATPLIGDEP ENLEGDGDLH bmy_03128T0/1-1244 ANPDSLETAG PSSPASVTVT VGDEGADTPV GATPLIGDEP ENLEGDGDLH BACU015883/1-1191 ANPDSLETAG PSSPASVTVT VGDEGADTPV GATPLIGDEP ENLEGDGDLH 201 250 ENSTTRP00000013419/1-1017 ---------- ---------- ---------- ---------- ---------- ENSP00000364687/1-1210 GGRILLGHAT KSFPSSPSKG GSCPSRAKMS MTGAGKSPPS VQSLAMRLLS ENSBTAP00000007456/1-1272 GGRILLGHAT KSFPSSPSKG GACPSRAKMS MTGAGKSPPS VQSLAMRLLS bmy_03128T0/1-1244 GGRILMGHAT KSFPSSPSKG GACPSRAKMS MTGAGKSPPS VQSLAMRLLS BACU015883/1-1191 GGRILMGHAT KSFPSSPSKG GACPSRAKMS MTGAGKSPPS VQSLAMRLLS 251 300 ENSTTRP00000013419/1-1017 ---------- ---------- ---------- ---------- -PPVPEKRPP ENSP00000364687/1-1210 MPGAQGAAAA GSEPPPATTS PEGQPKVHRA RKTMSKPGNG QPPVPEKRPP ENSBTAP00000007456/1-1272 MPGAQGAPAA GPEPPPATAS PEGQPKVHRA RKTMSKPGNG QPPVPEKRPP bmy_03128T0/1-1244 MPGAQGATAA GPEPPLATAS PEGQPKVHRA RKTMSKPGNG QPPVPEKRPP BACU015883/1-1191 MPGAQGATAA GPEPPPATAS PEGQPKVHRA RKTMSKPGNG QPPVPEKRPP 301 350 ENSTTRP00000013419/1-1017 EVQHFRMSDD VHSLGKVTSD VAKRRKLNSG GGLSEELGSA RGSREVTLEK ENSP00000364687/1-1210 EIQHFRMSDD VHSLGKVTSD LAKRRKLNSG GGLSEELGSA RRSGEVTLTK ENSBTAP00000007456/1-1272 EVQHFRMSDD VHSLGKVTSD VAKRRKLNSG GGLSEELAST RSSGEVTLEK bmy_03128T0/1-1244 EVQHFRMSDD VHSLGKVTAD VAKRRKLNSG GGLSEELGSA RGSREVTLEK BACU015883/1-1191 EVQHFRMSDD VHSLGKVTSD VAKRRKLNSG GGLSEELGSA RGSREVTLEK 351 400 ENSTTRP00000013419/1-1017 GDPGSLEEWE TVVGDDFSLY YDSYSVDERV DSDSKSEVEA LAEQLSEEEE ENSP00000364687/1-1210 GDPGSLEEWE TVVGDDFSLY YDSYSVDERV DSDSKSEVEA LTEQLS-EEE ENSBTAP00000007456/1-1272 GDPGSLEEWE TVVGDDFSLY YDSYSVDERV DSDSKSEVEA LAEQLSEEEE bmy_03128T0/1-1244 GDPGSLEEWE TVVGDDFSLY YDSYSVDERV DSDSKSEVEA LAEQLSEEEE BACU015883/1-1191 GDPGSLEEWE TVVGDDFSLY YDSYSVDERV DSDSKSEVEA LAEQLSEEEE 401 450 ENSTTRP00000013419/1-1017 EEEEEEEEEE EEEEEEEEEE EDEESGNQSD RSGSSGRRKA KKKWRKDSPW ENSP00000364687/1-1210 EEEEEEEEEE EEEEEEEEEE EDEESGNQSD RSGSSGRRKA KKKWRKDSPW ENSBTAP00000007456/1-1272 EEEEEEEEEE EEEEEEEEEE EDEESGNQSD RSGSSGRRKA KKKWRKDSPW bmy_03128T0/1-1244 EEEEEEEEEE EEEEEEEEEE EDEESGNQSD RSGSSGRRKA KKKWRKDSPW BACU015883/1-1191 EEEEEEEEEE EEEEEEEEEE EDEESGNQSD RSGSSGRRKA KKKWRKDSPW 451 500 ENSTTRP00000013419/1-1017 VKPSRKRRKR EPPRAKEPRG VNGVGSSGPS EYMEVPLGSL ELPSEGTLSP ENSP00000364687/1-1210 VKPSRKRRKR EPPRAKEPRG VNGVGSSGPS EYMEVPLGSL ELPSEGTLSP ENSBTAP00000007456/1-1272 VKPSRKRRKR EPPRAKEPRG VNGVGSSGPS EYMEVPLGSL ELPSEGTLSP bmy_03128T0/1-1244 VKPSRKRRKR EPPRAKEPRG VNGVGSSGPS EYMEVPLGSL ELPSEGTLSP BACU015883/1-1191 VKPSRKRRKR EPPRAKEPRG VNGVGSSGPS EYMEVPLGSL ELPSEGTLSP 501 550 ENSTTRP00000013419/1-1017 NHAGVSNDTS SLETERGFEE LPLCSCRMEA PKIDRISERA GHKCMATESV ENSP00000364687/1-1210 NHAGVSNDTS SLETERGFEE LPLCSCRMEA PKIDRISERA GHKCMATESV ENSBTAP00000007456/1-1272 NHAGVSNDTS SLETERGFEE LPLCSCRMEA PKIDRISERA GHKCMATESV bmy_03128T0/1-1244 NHAGVSNDTS SLETERGFEE LPLCSCRMEA PKIDRISERA GHKCMATESV BACU015883/1-1191 NHAGVSNDTS SLETERGFEE LPLCSCRMEA PKIDRISERA GHKCMATESV 551 600 ENSTTRP00000013419/1-1017 DGELSGCNAA ILKRETMRPS SRVALMVLCE THRARMVKHH CCPGCGYFCT ENSP00000364687/1-1210 DGELSGCNAA ILKRETMRPS SRVALMVLCE THRARMVKHH CCPGCGYFCT ENSBTAP00000007456/1-1272 DGELSGCNAA ILKRETMRPS SRVALMVLCE THRARMVKHH CCPGCGYFCT bmy_03128T0/1-1244 DGELSGCNAA ILKRETMRPS SRVALMVLCE THRARMVKHH CCPGCGYFCT BACU015883/1-1191 DGELSGCNAA ILKRETMRPS SRVALMVLCE THRARMVKHH CCPGCGYFCT 601 650 ENSTTRP00000013419/1-1017 AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000364687/1-1210 AGTFLECHPD FRVAHRFHKA CVSQLNGMVF CPHCGEDASE AQEVTIPRGD ENSBTAP00000007456/1-1272 AGTFLECHPD FRVAHRFHKA CVSQLNGMVF CPHCGEDASE AQEVTIPRGD bmy_03128T0/1-1244 AGTFLECHPD FRVAHRFHKA CVSQLNGMVF CPHCGEDASE AQEVTIPRGD BACU015883/1-1191 AGTFLECHPD FRVAHRFHKA CVSQLNGMVF CPHCGEDASE AQEVTIPRGD 651 700 ENSTTRP00000013419/1-1017 XXXXXXXXXX XXXXXXXXXX XXXXXTSQPS ARMRGQGEPR RPPCDPLTDT ENSP00000364687/1-1210 GVTPPAGTAA PAPPPLSQDV PGRADTSQPS ARMRGHGEPR RPPCDPLADT ENSBTAP00000007456/1-1272 GVTPPAGTAA PAPPPLAQDA PGRADTSQPS ARMRGQGEPR RPPCDPLADT bmy_03128T0/1-1244 GVTPPAGTAA PAPPPLAQDA PGRADTSQPS ARMRGQGEPR RPPCDPLADT BACU015883/1-1191 GVTPPAGTAA PAPPPLAQDA PGRADTSQPS ARMRGQGEPR RPPCDPLADT 701 750 ENSTTRP00000013419/1-1017 IDSSGPSLTL PNGGCLSAVG LPPGPGREAL EKALVIQESE RRKKLRFHPR ENSP00000364687/1-1210 IDSSGPSLTL PNGGCLSAVG LPLGPGREAL EKALVIQESE RRKKLRFHPR ENSBTAP00000007456/1-1272 IDSSGPSLTL PNGGCLSAVG LPPGPGREAL EKALVIQESE RRKKLRFHPR bmy_03128T0/1-1244 IDSSGPSLTL PSGGCLSAVG LPPGPGREAL EKALVIQESE ---------- BACU015883/1-1191 IDSSGPSLTL PSGGRLSAVG LPPGPGREAL EKALVIQESE RRKKLRFHPR 751 800 ENSTTRP00000013419/1-1017 QLYLSVKQGE LQKVILMLLD NLDPNFQSDQ QSKRTPLHAA AQKGSVEICH ENSP00000364687/1-1210 QLYLSVKQGE LQKVILMLLD NLDPNFQSDQ QSKRTPLHAA AQKGSVEICH ENSBTAP00000007456/1-1272 QLYLSVKQGE LQKVILMLLD NLDPNFQSDQ QSKRTPLHAA AQKGSVEICH bmy_03128T0/1-1244 ---------- ---------- -------SDQ QSKRTPLHAA AQKGSVEICH BACU015883/1-1191 QLYLSVKQGE LQKVILMLLD NLDPNFQSDQ QSKRTPLHAA AQKGSVEICH 801 850 ENSTTRP00000013419/1-1017 VLLQAGANIN AVDKQQRTPL MEAVVNNHLE VARYMVQRGG CVYSKEEDGS ENSP00000364687/1-1210 VLLQAGANIN AVDKQQRTPL MEAVVNNHLE VARYMVQRGG CVYSKEEDGS ENSBTAP00000007456/1-1272 VLLQAGANIN AVDKQQRTPL MEAVVNNHLE VARYMVQRGG CVYSKEEDGS bmy_03128T0/1-1244 VLLQAGANIN AVDKQQRTPL MEAVVNNHLE VARYMVQRGG CVYSKEEDGS BACU015883/1-1191 VLLQAGANIN AVDKQQRTPL MEAVVNNHLE VARYMVQRGG CVYSKEEDGS 851 900 ENSTTRP00000013419/1-1017 TCLHHAAKIG NLEMVSLLLG TGQVDVNAQD SGGWTPIIWA AEHKHIEVIR ENSP00000364687/1-1210 TCLHHAAKIG NLEMVSLLLS TGQVDVNAQD SGGWTPIIWA AEHKHIEVIR ENSBTAP00000007456/1-1272 TCLHHAAKIG NLEMVSLLLS TGQVDVNAQD SGGWTPIIWA AEHKHIEVIR bmy_03128T0/1-1244 TCLHHAAKIG NLEMVSLLLS TGQVDVNAQD SGGWTPIIWA AEHKHIEVIR BACU015883/1-1191 TCLHHAAKIG NLEMVSLLLS TGQVDVNAQD SGGWTPIIWA AEHKHIEVIR 901 950 ENSTTRP00000013419/1-1017 MLLTRGADVT LTDNEENICL HWASFTGSAA IAEVLLNARC DLHAVNYHGD ENSP00000364687/1-1210 MLLTRGADVT LTDNEENICL HWASFTGSAA IAEVLLNARC DLHAVNYHGD ENSBTAP00000007456/1-1272 MLLTRGADVT LTDNEENICL HWASFTGSAA IAEVLLNARC DLHAVNYHGD bmy_03128T0/1-1244 MLLTRGADVT LTDNEENICL HWASFTGSAA IAEVLLNARC DLHAVNYHGD BACU015883/1-1191 MLLTRGADVT LTDNEENICL HWASFTGSAA IAEVLLNARC DLHAVNYHGD 951 1000 ENSTTRP00000013419/1-1017 TPLHIAARES YHDCVLLFLS RGANPELRNK EGDTAWDLTP ERSDVWFALQ ENSP00000364687/1-1210 TPLHIAARES YHDCVLLFLS RGANPELRNK EGDTAWDLTP ERSDVWFALQ ENSBTAP00000007456/1-1272 TPLHIAARES YHDCVLLFLS RGANPELRNK EGDTAWDLTP ERSDVWFALQ bmy_03128T0/1-1244 TPLHIAARES YHDCVLLFLS RGANPELRNK EGDTAWDLTP ERSDVWFALQ BACU015883/1-1191 TPLHIAARES YHDCVLLFLS RGANPELRNK EGDTAWDLTP ERSDVWFALQ 1001 1050 ENSTTRP00000013419/1-1017 LNRKLRLGVG NRAIRTEKII CRDVARGYEN VPIPCVNGVD GEPCPEDYKY ENSP00000364687/1-1210 LNRKLRLGVG NRAIRTEKII CRDVARGYEN VPIPCVNGVD GEPCPEDYKY ENSBTAP00000007456/1-1272 LNRKLRLGVG NRAIRTEKII CRDVARGYEN VPIPCVNGVD GEPCPEDYKY bmy_03128T0/1-1244 LNRKLRLGVG NRAIRTEKII CRDVARGYEN VPIPCVNGVD GEPCPEDYKY BACU015883/1-1191 LNRKLRLGVG NRAIRTEKII CRDVARGYEN VPIPCVNGVD GEPCPEDYKY 1051 1100 ENSTTRP00000013419/1-1017 ISENCETSTM NIDRNITHLQ HCTCVDDCSS SNCLCGQLSI RCWYDKDGRL ENSP00000364687/1-1210 ISENCETSTM NIDRNITHLQ HCTCVDDCSS SNCLCGQLSI RCWYDKDGRL ENSBTAP00000007456/1-1272 ISENCETSTM NIDRNITHLQ HCTCVDDCSS SNCLCGQLSI RCWYDKDGRL bmy_03128T0/1-1244 ISENCET--- ---------- ---------- SNCLCGQLSI RCWYDKDGRL BACU015883/1-1191 ISENCETSTM NIDRNITHLQ HCTCVDDCSS SNCLCGQLSI RCWYDKDGRL 1101 1150 ENSTTRP00000013419/1-1017 LQEFNKIEPP LIFECNQACS CWRNCKNRVV QSGIKVRLQL YRTAKMGWGV ENSP00000364687/1-1210 LQEFNKIEPP LIFECNQACS CWRNCKNRVV QSGIKVRLQL YRTAKMGWGV ENSBTAP00000007456/1-1272 LQEFNKIEPP LIFECNQACS CWRNCKNRVV QSGIKVRLQL YRTAKMGWGV bmy_03128T0/1-1244 LQEFNKIEPP LIFECNQACS CWRNCKNRVV QSGIKVRLQL YRTAKMGWGV BACU015883/1-1191 LQEFNKIEPP LIFECNQACS CWRNCKNRVV QSGIKVRLQL YRTAKMGWGV 1151 1200 ENSTTRP00000013419/1-1017 RALQTIPQGT FICEYVGELI SDAEADVRED DSYLFDLDNK DGEVYCIDAR ENSP00000364687/1-1210 RALQTIPQGT FICEYVGELI SDAEADVRED DSYLFDLDNK DGEVYCIDAR ENSBTAP00000007456/1-1272 RALQTIPQGT FICEYVGELI SDAEADVRED DSYLFDLDNK DGEVYCIDAR bmy_03128T0/1-1244 RALQTIPQGT FICEYVGELI SDAEADVRED DSYLFDLDNK DGEVYCIDAR BACU015883/1-1191 RALQTIPQGT FICEYVGELI SDAEADVRED DSYLFDLDNK DGEVYCIDAR 1201 1250 ENSTTRP00000013419/1-1017 YYGNISRFIN HLCDPNIIPV RVFMLHQDLR FPRIAFFSSR DIRAGEELGF ENSP00000364687/1-1210 YYGNISRFIN HLCDPNIIPV RVFMLHQDLR FPRIAFFSSR DIRTGEELGF ENSBTAP00000007456/1-1272 YYGNISRFIN HLCDPNIIPV RVFMLHQDLR FPRIAFFSSR DIRAGEELGF bmy_03128T0/1-1244 YYGNISRFIN HLCDPNIIPV RVFMLHQDLR FPRIAFFSSR DIRAGEELGF BACU015883/1-1191 YYGNISRFIN HLCDPNIIPV RVFMLHQDLR FPRIAFFSSR DIRAGEELGF 1251 1300 ENSTTRP00000013419/1-1017 DYGDRFWDIK SKYFTCQCGS EKCKHSAEAI ALEQSRLARL DPHPELLPEL ENSP00000364687/1-1210 DYGDRFWDIK SKYFTCQCGS EKCKHSAEAI ALEQSRLARL DPHPELLPEL ENSBTAP00000007456/1-1272 DYGDRFWDIK SKYFTCQCGS EKCKHSAEAI ALEQSRLARL DPHPELLPEL bmy_03128T0/1-1244 DYGDRFWDIK SKYFTCQCGS EKCKHSAEAI ALEQSRLARL DPHPELLPEL BACU015883/1-1191 DYGDRFWDIK SKYFTCQCGS EKCKHSAEAI ALEQSRLARL DPHPELLPEL 1301 1350 ENSTTRP00000013419/1-1017 GSLPPVNP ENSP00000364687/1-1210 GSLPPVNT ENSBTAP00000007456/1-1272 SSLPPVNP bmy_03128T0/1-1244 GSLPPVNP BACU015883/1-1191 GSLPPVNP