KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:32:11 2014 Check: 00 .. Name: ENSP00000323663/1-615 Len: 652 Check: 484 Weight: 1.00 Name: ENSTTRP00000009991/1-589 Len: 652 Check: 9767 Weight: 1.00 Name: ENSBTAP00000007484/1-500 Len: 652 Check: 8814 Weight: 1.00 Name: bmy_11381T0/1-584 Len: 652 Check: 835 Weight: 1.00 // 1 50 ENSP00000323663/1-615 MSEPGK-GDD CLELESSMAE SRLRAPD--- -LGVSRCLGK CQKNSPGARK ENSTTRP00000009991/1-589 RRELGKXXSD CLELESSMAE SRLRAPD--- -LGVSSCLGK CPKSSPDAGR ENSBTAP00000007484/1-500 ---------- -------MDK SKLRAPDPGA QLAVSSCLGK CQKSSPDARR bmy_11381T0/1-584 MPGRGSRGND CLELESSMAE SRLRAPDLGA QLGVSSCLGK CQKSSPDAGR 51 100 ENSP00000323663/1-615 HPFSGKSFYL DLPAGKNLQF LTGAIQQLGG VIEGFLSKEV SYIVSSRREV ENSTTRP00000009991/1-589 QPFSGKSFYL DLPAGKNLQF LTGAIQRLGG VIEGFLSKEV SYIVSSRREA ENSBTAP00000007484/1-500 QPFSGKSFYL DLPAGKNLQF LTGAIQQLGG VIEGFLSKEV SYIVSSRREA bmy_11381T0/1-584 QPFSGKSFYL DLPAGKNLQF LTGAIQQLGG VIEGFLSKEV SYIVSSRREA 101 150 ENSP00000323663/1-615 KAESSGKSHR GCPSPSPSEV RVETSAMVDP KGSHPRPSRK PVDS------ ENSTTRP00000009991/1-589 KAESSGTSHR GC--PSPSEV TVETLSVANP KGSHASPAQK AVDS------ ENSBTAP00000007484/1-500 KAESSRTSHR GC--PSPSEV TVDTPPVANP KGSRARPAQK AMDP------ bmy_11381T0/1-584 KTESSGTRHR GS--PSPSEV TVETLSVANP KGSRARPAQK AVDSVVSTAA 151 200 ENSP00000323663/1-615 --------VP LSRGKELLQK AIRNQGSISG GGSGGSSSLL TNARSWGVRI ENSTTRP00000009991/1-589 --------VP LSRGKELLQK AIRNQGSGGG GGGGRSSSLL SNARSWGVRI ENSBTAP00000007484/1-500 --------VP LSRGKELLQK AIRNQGSSSG GGSGHGSSLL SNARSWGVQI bmy_11381T0/1-584 PIAPLFRQVP LSRGKELLQK AIRNQGSSGG GGGGRGSGLL SNARSWGVRI 201 250 ENSP00000323663/1-615 LHVDEMMMH- ------VQQL SLASLCVKKQ QPKKPEGTCP AAESRTRKVA ENSTTRP00000009991/1-589 LHVDEMMMH- ------VQQL SLDAPCVKKQ GPKKPEXXXX XXXXXXXXXA ENSBTAP00000007484/1-500 LHVDEMLIR- ------VQQL SLDAPRVKKQ GLKKPEGTCP -AESRTRKVA bmy_11381T0/1-584 LHVDGTLPAR GLRGGGLPAL SGNLGCDRDQ SR----GARP -AESRTRQVA 251 300 ENSP00000323663/1-615 RLKAPFLKIE DES------- --RKFRPFHH QFKSFPEISF LGPKDASPFE ENSTTRP00000009991/1-589 RLKAPFLKVE DES------- --RKFRPFHH QFKSFPEISF LGPKDASPFE ENSBTAP00000007484/1-500 RLKAPFLKVE DES------- --RKFRPFHL QFKSFPEISF LGPKATSPFE bmy_11381T0/1-584 RLKAPFLKVE DESSQSGSFL CFRKFRPFHH QFKSFPEISF LGPKDASPFE 301 350 ENSP00000323663/1-615 APTTLGSMHH TRESKDGEPS PRSAAHTMPR RKKGYCECCQ EAFEELHVHL ENSTTRP00000009991/1-589 APTTPGISQH TREARDQEPS RRSAACTVPR RKKGYCECCQ EAFEELRGHL ENSBTAP00000007484/1-500 APMTPSSSHH TREAKDQEPS RQSAACTVPR RRKGYCECCQ EAFEELHRHL bmy_11381T0/1-584 APTTPGSSHH TREAKDQEPS RRSAPCTVPR KKKGYCECCQ EAFEELRGHL 351 400 ENSP00000323663/1-615 QSAQHRSFAL EAHLYAEVDR IIAQLSHSFA DIPFQAGLPR WSGSPASDCD ENSTTRP00000009991/1-589 QSPQHRGFAL EARPYAEVDR IIAQLGHSFA DIPFQASLPG QPGSLASDCD ENSBTAP00000007484/1-500 QSPRHQGFAL EAHLYAEVDR IIAQLSHSFA DVPFQASLPG QPGSLASDCD bmy_11381T0/1-584 QSPQHRGFAL EARPYAEVDR IIAQLSHSFA DIPFQASLPG QPGSLASDCD 401 450 ENSP00000323663/1-615 PLCPETLHPH QPSHPRAASP RIRKEDSCQA SVTQGRAAGQ QRWTESLDGV ENSTTRP00000009991/1-589 PLCPETPPPS QPSYLRAASP RRRKEDDHQA PGTSLT-AQQ IQTEQLVKRT ENSBTAP00000007484/1-500 PLCPEPPPPH WPSPLRAVSP WRRKDDHQQA PGATEH-GGT VSG---MKAA bmy_11381T0/1-584 PLCPETPPPS QPSYLRAASP RRRKEDDHQA PGASEH-DGT VGG---LRAP 451 500 ENSP00000323663/1-615 MGPPASHTCV SATTLLPALP KGSREQGCLC PCPASFTQSH LVTSLALLPG ENSTTRP00000009991/1-589 VPPASGRACV GATALL---- -GCREWGRAC QS-------- AQVSLALLPT ENSBTAP00000007484/1-500 AEPVEAGKVP GPTA------ --------SC QE-------- LKGCRHRAPR bmy_11381T0/1-584 AEPVEAGKIP GPIA------ --------SH QEPG------ VSADVFMDPR 501 550 ENSP00000323663/1-615 EWSPAEDMPL HPSQENSFAP ADIPVKGP-L LFPEARPWLM SARCWVRPFP ENSTTRP00000009991/1-589 EWSPAEGMLA AHSQRNSFAL MSVA-PGP-L PFPGARQ--L PSAPWVHPFP ENSBTAP00000007484/1-500 R--------- -TCRE----- -----PGCLS PPPSASRRAD QLLPMVLDLP bmy_11381T0/1-584 E-TPVSRSPA YQCLLTSSGF AELS-PGPDL ALVGHKRKVQ FPSGNAEKRP 551 600 ENSP00000323663/1-615 FVTWGCLIPH DTTPLHEEVS PC-PCLRLGY LYLLLTQSLW CRVRVPSLST ENSTTRP00000009991/1-589 FVTWACLVPQ CLSHDSATLG GA-PPFLRLP HMLLTPKPMH -----QVLIP ENSBTAP00000007484/1-500 ---------- -ASSRPLTPN PS-PPPTENY FYESLPTPGH ---------- bmy_11381T0/1-584 GVSW----PQ ASFFVPRAPS PCGTRTTSGK HLLSLPLPGH ---------E 601 650 ENSP00000323663/1-615 AGPIPRTSHP CTLAFPSYLN DHDLGHLCQA KPQGWNTPQP FLHCGFLAVD ENSTTRP00000009991/1-589 SSPSPRTSHP C-MEFPSHFN NCDLGHLCQV KPQGNISPQP CLCSGLQDIS ENSBTAP00000007484/1-500 ---------A A--------- ---LGQTPPN LR-PWIMQAR ---------- bmy_11381T0/1-584 PGPLASLQPV C--------- ---HQQTCPS LP-GPFPGQP TDR------- 651 700 ENSP00000323663/1-615 SG ENSTTRP00000009991/1-589 -- ENSBTAP00000007484/1-500 -- bmy_11381T0/1-584 --