KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:14 2014 Check: 00 .. Name: ENSP00000320251/1-567 Len: 567 Check: 7111 Weight: 1.00 Name: ENSBTAP00000007523/1-563 Len: 567 Check: 4783 Weight: 1.00 Name: bmy_09361T0/1-422 Len: 567 Check: 9620 Weight: 1.00 Name: ENSTTRP00000002254/1-563 Len: 567 Check: 5007 Weight: 1.00 Name: BACU009332/1-564 Len: 567 Check: 276 Weight: 1.00 // 1 50 ENSP00000320251/1-567 MMAAVPPGLE PWNRVRIPKA GNRSAVTVQN PGAALDLCIA AVIKECHLVI ENSBTAP00000007523/1-563 KMATLLPGPE PWNRVRIPKA GSRSAVTVQN PDTALDLCIA AIIKECCRIT bmy_09361T0/1-422 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002254/1-563 KMAALLPGPQ PWNRVRLPKA GSRSTVTVQD PGAALDLCIA AVIKECCLVT BACU009332/1-564 -MAALLPGPE PWNRVRIPKA GSRSAVIVQD PGAALDLCIA AVIKECCLVT 51 100 ENSP00000320251/1-567 LSLKSQTLDA ETDVLCAVLY SNHNRMGRHK PHLALKQVEQ CLKRLKNMNL ENSBTAP00000007523/1-563 LSLKSRTLDA ETDVLCAILY SNHNRMGRHK PHLALRQVEQ CLKRLKNMNL bmy_09361T0/1-422 ---------- ---------- -----MGRHK PHLALKQLDC ETSRFARIHY ENSTTRP00000002254/1-563 LSLKSQILDA ETDVLCAVLY SNHNRMGRHK PHLALKQVEQ CLKRLKNMNL BACU009332/1-564 LSLKSQILDA ETDVLCAVLY SNHNRMGRHK PHLALKQVEQ CLKRLKNMNL 101 150 ENSP00000320251/1-567 EGSIQDLFEL FSSNENQPLT TKVCVVPSQP VVELVLMKVL GACKLLLRLL ENSBTAP00000007523/1-563 EGSIQDLSES FSSNENQPIN TKACVIPSQP VVELVLMKIL GACKLLLRLL bmy_09361T0/1-422 ---------- FKP------- ---------- ---------- ---------- ENSTTRP00000002254/1-563 EGSIQDLSES FSS-ENQPVN TKACVIPSQP VVELVLMKIL GASKLLLRLL BACU009332/1-564 EGSIQDLSES FSSNENQPVN TKACVIPSQP VVELVLMKIL GACKLLLRLL 151 200 ENSP00000320251/1-567 DCCCKTFLLT VKHLGLQEFI ILNLVMVGLV SRLWVLYKGV LKRLILLYEP ENSBTAP00000007523/1-563 DCCCKTFLLT VKHLGLQEFI ILNLVMVGLV SRLWVLYKDV LKRLVSLYEP bmy_09361T0/1-422 ---CDGW--- ---AGEQVMV CM-------- ----VLYKDV LKRLVSLYEP ENSTTRP00000002254/1-563 DCCCKTFLLT VKHLGLQEFI ILNLVMVGLV SRLWVLYKDV LKRLVSLYEP BACU009332/1-564 DCCCKTFLLT VKHLGLQEFI ILNLVMVGLV SRLWVLYKDV LKRLVSLYEP 201 250 ENSP00000320251/1-567 LFGLLQEVAR IQPMPYFKDF TFPSDITEFL GQPYFEAFKK KMPIAFAAKG ENSBTAP00000007523/1-563 LFGLLQEVSR IQPLPYFKGF TFPSDIVEFL GEPYFEVFKK KMPTAFVAKG bmy_09361T0/1-422 LFGLLQEVSR IQPLPYFKGF TFPSDIAEFL GEPYFEIFKK KMPTAFAAKG ENSTTRP00000002254/1-563 LFGLLQEVSR IQPLPYFKGF TFPSDIAEFL GEPYFEIFKK KMPTAFAAKG BACU009332/1-564 LFGLLQEVSR IQPLPYFKGF TFPSDIAEFL GEPYFEIFKK KMPTAFAAKG 251 300 ENSP00000320251/1-567 INKLLNKLFL INEQSPRASE ETLLGISKKA KQMKINVQNN VDLGQPVKNK ENSBTAP00000007523/1-563 VTKLLNKLFL TKEQSQRSGE ETLLRISEKA KQMKINIQNN MDLGQPVKSK bmy_09361T0/1-422 VTKLLNKLFL TKEQSQRSSE EPLLGISKKA KQMKINIQNN VDLGQPVKNK ENSTTRP00000002254/1-563 VTKLLNKLFL TKEQSQRSSE ETLLRISKKA KQMKINTQNN VDLGQPVKNK BACU009332/1-564 VTKLLNKLFL TKERSQRSSE EPLLGISKKA KQMKINIQNN VDLGQPVKNK 301 350 ENSP00000320251/1-567 RVFKEESSEF DVRAFCNQLK HKATQETSFD FKCSQSRLKT TKYSSQKVIG ENSBTAP00000007523/1-563 KILKEKSSEF DVRAFCKQLK QKAIQEKSFE FKYSPSKLKA TKHSSQKAIG bmy_09361T0/1-422 KILKEKSSEF DVRAFCKQLK HKAIQENSFE FKCSQSKLKA TKRSSRKAIG ENSTTRP00000002254/1-563 KILKEKSSEF DVRAFCKQLK HRAIQANSFE FKCSQSKLKA TKRSSWKAIG BACU009332/1-564 KILKEKSSEF DVRAFCKQLK HKAIQENSFE FKCSQSKLKA TKRSSRKAIG 351 400 ENSP00000320251/1-567 TPHAKSFVQR FREAESFTQL SEEIQMAVVW CRSKKLKAQA IFLGNKLLKS ENSBTAP00000007523/1-563 TPCVKSLVQR FREAETFTQL SEEIQMAILW CRSKKLKAQT AFLGNKLLKS bmy_09361T0/1-422 TPCVKSLVQR FRETETFVQL SEEIQMAILW CRSKKLKAQT TFLGNKLLKS ENSTTRP00000002254/1-563 TPCVKSLVQR FRETDTFVQL SEEIQMAILW CRSKKLKAQT TFLGNKLLKS BACU009332/1-564 TPCVKSLVQR FRETETFVQL SEEIQMAILW CRSKKLKAQT TFLGNKLLKS 401 450 ENSP00000320251/1-567 NRLKHLEAQG TSLPKKLECI KTSICNHLLR GSGIKTSKHH LRQRRSQNKF ENSBTAP00000007523/1-563 NRLKHVEAQG SSLPKKLQCI KTSICNCLLH GLGMKTSKHH LRQRRSQNKF bmy_09361T0/1-422 NRLKHVEAQG YSLPKKLECI KTSICNCLLH XSGSKTLKDH LRQRRSQNKF ENSTTRP00000002254/1-563 NRLKHVEAQG YSLPKKLECI KTSICNCLLQ GSGSKTLKNH LR-RRSQNKF BACU009332/1-564 NRLKHVEAQG YSLPKKLECI KTSICNCLLH GSGSKTLKDH LRQRRSQNKF 451 500 ENSP00000320251/1-567 LRRQRKPQRK LQSTLLREIQ QFSQGTRKSA TDTSAKWRLS HCTVHRTDLY ENSBTAP00000007523/1-563 SLKGRK-QRK LQSTLLKEIQ QPPQGT-QSA TDV-IKGRLS DSTVRRTDLY bmy_09361T0/1-422 SLKRRKPQRK LQSALLKETQ QPPQGT-QSA TDI-IKGRLS HPTVRTTDLY ENSTTRP00000002254/1-563 SLKRRKPQRK LQSTLLKETQ QPPQGT-QSA TDI-IKGRLS HPTVCTTDLY BACU009332/1-564 SLKRRKPQRK LQSTLLKETQ QPPQGT-QSA TDI-IKGRLS HPTVRTPDLY 501 550 ENSP00000320251/1-567 PNSKQLLNSG VSMPVIQTKE KMIHENLRGI HENETDSWTV MQINKNSTSG ENSBTAP00000007523/1-563 PNNKQV-NRR VSNPVIQTKE TQTHEKLTES NENKTDSWTV MQGNKHNTSG bmy_09361T0/1-422 PNNKQVLSRR VSSPVIQTKE KQIHENLIES NENETDSWTT MQINKHNTSG ENSTTRP00000002254/1-563 PNNKQVLSRR VSSPVIQTKE KQIHETLIES NENETDSWTT MQINKHNTSG BACU009332/1-564 PNNKQVLSRR VSSPVIQTKE KQIHENLIES NENETDSWTM MQINKHNTSG 551 600 ENSP00000320251/1-567 TIKETDDIDD IFALMGV ENSBTAP00000007523/1-563 STKETDDIDD IFALMGV bmy_09361T0/1-422 ITKETDDIDD IFALMGV ENSTTRP00000002254/1-563 ITKETDDIDD IFALMGV BACU009332/1-564 ITKGTDDIDD IFALMGV