KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:15 2014 Check: 00 .. Name: ENSTTRP00000010565/1-559 Len: 673 Check: 9546 Weight: 1.00 Name: ENSBTAP00000007524/1-671 Len: 673 Check: 9923 Weight: 1.00 Name: ENSP00000390252/1-671 Len: 673 Check: 9802 Weight: 1.00 Name: bmy_10072T0/1-437 Len: 673 Check: 3789 Weight: 1.00 Name: BACU009107/1-672 Len: 673 Check: 1900 Weight: 1.00 // 1 50 ENSTTRP00000010565/1-559 ---------- ---------- ------ELRA T--------- ---------- ENSBTAP00000007524/1-671 MSEILDLSFL SEVERDLILS VLQRDEELRK ADEKRIRRLK NDLLEIKRKG ENSP00000390252/1-671 MSELLDLSFL SEEEKDLILS VLQRDEEVRK ADEKRIRRLK NELLEIKRKG bmy_10072T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU009107/1-672 MSEILDLSFL SEVERDLILS VLQRDEELRK ADEKRIRRLK NELLEIKRKG 51 100 ENSTTRP00000010565/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007524/1-671 AKRGSQRYSN RTCARCQETL GRLTPKTNTC WSCNHLVCRD CRVQESNGTW ENSP00000390252/1-671 AKRGSQHYSD RTCARCQESL GRLSPKTNTC RGCNHLVCRD CRIQESNGTW bmy_10072T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU009107/1-672 AKRGSQHYSD RTCARCQESL GRLTPKTNTC RGCNHLVCRD CRIQESNGTW 101 150 ENSTTRP00000010565/1-559 ---------- ------EWFY DQKVNR-AYR TGSEIIRMS- RHKPAVNKRE ENSBTAP00000007524/1-671 RCKVCAKEIE LKKATGDWFY DQKVNRFAYH TGSEIIRMSL RHKPAVNKRE ENSP00000390252/1-671 RCKVCAKEIE LKKATGDWFY DQKVNRFAYR TGSEIIRMSL RHKPAVSKRE bmy_10072T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU009107/1-672 RCKVCAKEIE LKKATGDWFY DQKVNRFAYR TGSEIIRMSL RRKPAVNKRE 151 200 ENSTTRP00000010565/1-559 TMGQSLLHQS QMGNIWPGRK IIQEQQKEPS VPFEVPKLKS GK-SALEAES ENSBTAP00000007524/1-671 TVEQSLLHQS QLGDIWPGRK IIQEQQKEPS MSFEVPKLKS GR-SVLEAES ENSP00000390252/1-671 TVGQSLLHQT QMGDIWPGRK IIQERQKEPS VLFEVPKLKS GK-SALEAES bmy_10072T0/1-437 ---------- ---------- ---------- ---------- ---------- BACU009107/1-672 TVGQSFLHQS QMGNIWPGRK IIQEQQKEPS VPFEVPKLKS GKXXXXEAES 201 250 ENSTTRP00000010565/1-559 ESVDSYMADS DSTSRRDSLD KSGLFPEWKK MSAPKSQVEK EAQPGGQNVV ENSBTAP00000007524/1-671 ESLDSYTADS DTMSRRDSLD KSGLFPEWKK MSAPKPQVEK EAQLRGQNVV ENSP00000390252/1-671 ESLDSFTADS DSTSRRDSLD KSGLFPEWKK MSAPKSQVEK ETQPGGQNVV bmy_10072T0/1-437 ------MADS DSTSRRDSLD KSGLFPEWKK MSAPKSQVEK EAQPGGQNVV BACU009107/1-672 ESLDSYMADS DSTSRRDSQD KSGLFPEWKK MSTPKSQVEK EAQPGGQNVI 251 300 ENSTTRP00000010565/1-559 SVDEGEMIFK KNTRKILRPS EYTKSVIDLR PEDVGHESGS LGDRSKSVPG ENSBTAP00000007524/1-671 SVDEGEMIFK KNTRKILRPS EYTKSVIDLR PEDVGHESGA LGDRSKSVPG ENSP00000390252/1-671 FVDEGEMIFK KNTRKILRPS EYTKSVIDLR PEDVVHESGS LGDRSKSVPG bmy_10072T0/1-437 SVDEGEMIFK KNTRKILRPS EYTKSVIDLR PEDVGHESGS LGDRSKSVPG BACU009107/1-672 CVDEGEMIFK KNTRKILRPS EYTKSVIDLR PEDVGHESGS LGDRSKSVPG 301 350 ENSTTRP00000010565/1-559 LSVDMEEEEE EEEDIDHLVK LHRQKLARSS MRSGSSMSTI GSMMSIYSEA ENSBTAP00000007524/1-671 LSVDM-EEEE EEEDIDHLVK LHRQKLARSS MRSGSSMSTI GSMMSIYSEA ENSP00000390252/1-671 LNVDM-EEEE EEEDIDHLVK LHRQKLARSS MQSGSSMSTI GSMMSIYSEA bmy_10072T0/1-437 LSVDMEEEEE EEEDIDHLVK LHRQKLARSS MRSGSSM--- ---------- BACU009107/1-672 LSVDM-EEEE EEEDIDHLVK LHRQKLARSS MRSGSSMSTI GSMMSIYSEA 351 400 ENSTTRP00000010565/1-559 GDFGNIFVTG KISFSLKYEQ QTQALVIHVK ECHHLAYADE AKKRSNPYVK ENSBTAP00000007524/1-671 GDFGNIFVTG KIAFSLKYEQ QTQALVIHVK ECQQLAYADE AKKRSNPYVK ENSP00000390252/1-671 GDFGNIFVTG RIAFSLKYEQ QTQSLVVHVK ECHQLAYADE AKKRSNPYVK bmy_10072T0/1-437 ---------- -------YEQ QTQALVIHVK ECHHLAYADE AKKRSNPYVK BACU009107/1-672 GDFGNIFVTG KIAFSLKYEQ QTQALVIHVK ECHHLAYADE AKKRSNPYVK 401 450 ENSTTRP00000010565/1-559 TYLLPDKSRQ GKRKTSIKRD TINPLYDEIL KYEIPESLLS QRTLQFSVWH ENSBTAP00000007524/1-671 AYLLPDKSRQ GKRKTSIKQD TINPLYDEIL RYEIPESLLA QRTLQFSVWH ENSP00000390252/1-671 TYLLPDKSRQ GKRKTSIKRD TINPLYDETL RYEIPESLLA QRTLQFSVWH bmy_10072T0/1-437 TYLLPDKSRQ GKRKTSIKRD TINPLYDEIL KYEIPESLLA QRTLQFSVWH BACU009107/1-672 TYLLPDKSRQ GKRKTSIKRD TINPLYDEIL KYEIPESLLA QRTLQFSVWH 451 500 ENSTTRP00000010565/1-559 HGRFGRNTFL GEAEVQMDSW KLDKKLDHCL PLHGKISAES STGLPSHKGE ENSBTAP00000007524/1-671 HGRFGRNTFL GEAEVQMDSW KLDKKLDHCL PLHGKISAES STSLPAHKGE ENSP00000390252/1-671 HGRFGRNTFL GEAEIQMDSW KLDKKLDHCL PLHGKISAES PTGLPSHKGE bmy_10072T0/1-437 HGRFGRNTFL GEAEVQMDSW KLDKKLDHCL PLHGKISAES STGLPSHKGE BACU009107/1-672 HGRFGRNTFL GEAEVQMDSW KLDKKLDHCL PLHGKISAES STGLPSHKGE 501 550 ENSTTRP00000010565/1-559 LVVSLKYIPA SKLPVGGDRK KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007524/1-671 LVVSLKYIPA SKLPVGSDRK KSKGGEGGEL QVWIKEAKNL TAAKLGGTSD ENSP00000390252/1-671 LVVSLKYIPA SKTPVGGDRK KSKGGEGGEL QVWIKEAKNL TAAKAGGTSD bmy_10072T0/1-437 LVVSLKYIPA SKLPVGGDRK KSTGGEGGEL QVWIKEAKNL TAAKSGGTSD BACU009107/1-672 LVVSLKYIPA SKLPVGGDRK KSTGGEGGEL QVWIKEAKNL TAAKSGGTSD 551 600 ENSTTRP00000010565/1-559 XXXXXYLLPM RNKASKRKTP VMKKTLNPHY NHTFVYNGVR LEDLQHMCLE ENSBTAP00000007524/1-671 SFVKGYLLPL RNKASKRKTP VVKKTLNPHY NHTFVYNGVR LEDLQHMCLE ENSP00000390252/1-671 SFVKGYLLPM RNKASKRKTP VMKKTLNPHY NHTFVYNGVR LEDLQHMCLE bmy_10072T0/1-437 SFVKGYLLPM RNKASKRKTP VMKKTLNPHY NHTFVYNGVR LEDLQHMCLE BACU009107/1-672 SFVKGYLLPV RNKASKRKTP VMKKTLNPHY NHTFVYNGVR LEDLQHMCLE 601 650 ENSTTRP00000010565/1-559 LTVWDREPLA SNDFLGGVRL GVGTGISNGE VVDWMDSTGE EVSLWQKMRQ ENSBTAP00000007524/1-671 LTVWDREPLA SNDFLGGVRL SVGTGISNGE VVDWMDSTGE EVSLWQKMRQ ENSP00000390252/1-671 LTVWDREPLA SNDFLGGVRL GVGTGISNGE VVDWMDSTGE EVSLWQKMRQ bmy_10072T0/1-437 LTVWDREPLA SNDFLGGVRL GVGTGISNGE VVDWMDSTGE EVSLWQKMRQ BACU009107/1-672 LTVWDQEPLA SNDFLGGVRL GVGTGISNGE VVDWMDSTGE EVSLWQKRRQ 651 700 ENSTTRP00000010565/1-559 YPGSWAEGTL QLRSSMAKQK LGL ENSBTAP00000007524/1-671 YPGSWAEGTL QLRSSMAKQK LGL ENSP00000390252/1-671 YPGSWAEGTL QLRSSMAKQK LGL bmy_10072T0/1-437 YPGSWAEGTL QLRSSMAKQK LGL BACU009107/1-672 DPGSWAEGTL QLRSSMAKQK LGL