KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:16 2014 Check: 00 .. Name: ENSTTRP00000004594/1-191 Len: 851 Check: 1715 Weight: 1.00 Name: ENSP00000391409/1-788 Len: 851 Check: 9895 Weight: 1.00 Name: ENSBTAP00000007530/1-784 Len: 851 Check: 763 Weight: 1.00 Name: bmy_06019T0/1-804 Len: 851 Check: 991 Weight: 1.00 Name: BACU002391/1-608 Len: 851 Check: 3249 Weight: 1.00 // 1 50 ENSTTRP00000004594/1-191 ---------- --MVLLP--- -----VLSAL VSDLHSLPWF INVSESQGPG ENSP00000391409/1-788 ---------- --MVLLRLLV F----LFAPV VSDLCSLPCF INVSESQGPG ENSBTAP00000007530/1-784 ---------- --MVLLRPLA L----LLALV VSELYCLSWF IDVSESQGPG bmy_06019T0/1-804 MWPGPKAERR DSDCVYGSMR MGASSLNRLF LTDLHCLPWF INVSESQGPG BACU002391/1-608 ---------- --MVLLRPLV L----LLALV VSDLHCLPWF INVSESQGPG 51 100 ENSTTRP00000004594/1-191 TILQSFSFNC SSHTP--TLE LLHVQPPTTF FNPPSLTRWQ GIYVGKMTLS ENSP00000391409/1-788 TVLQFLSFNC SSYTPTPTLE LLNVQPPTTF FNPPSLARWQ GTYVGKLTLS ENSBTAP00000007530/1-784 ATLQSFSFNC SPYIP--TLE LLHVQPPTTF FNPPSLTRWQ GTYVGKMTLS bmy_06019T0/1-804 TILQSFSFNC SSHTP--TLE LLHVQPPTTF FNPPSLTRWQ GIYVGKMTLS BACU002391/1-608 TILQSFSFNC SSHTP--TLE LLHVQPPTTF FNPPSLTRWQ GIYVGKMTLS 101 150 ENSTTRP00000004594/1-191 SSARLDALTV NHYELQLRFT CGNHVMEGPL SVDVQRDPGH IQCAGRFASP ENSP00000391409/1-788 SSAQLDALMV NHYKVQLKFT CGNHVMEGSL SVDVQRDLSH IQCAGQFASP ENSBTAP00000007530/1-784 SSARLDALTV NHYELQLRFT CGNQVTEGRL SVNVQRDPNR DQCAGRFASP bmy_06019T0/1-804 SSARLDALTV NHYELQLRFT CGNHVMEGPL SVDVQRDPGR IQCAGRFASP BACU002391/1-608 SSARLDALTV NHYELQLRFT CGNHVMEGPL SVDVQRDPGR IQCAGRFASP 151 200 ENSTTRP00000004594/1-191 ---------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 AGEMIQVPET VTPGARLYTL LLPGLELHGA QMSIISAQDL PHFPGPFSIN ENSBTAP00000007530/1-784 AGEIIQVRET VTPGTPLYTL LLPG---QGA QMNITSAQDP PYFPGPFSID bmy_06019T0/1-804 AGEIIQVPET VTPGTRLYTL LLPG---QGA QMSITSAQDP PYFPGPFSIN BACU002391/1-608 AGEIIQVPET VTPGTRLYTL LLPG---QGA Q--------- ---------- 201 250 ENSTTRP00000004594/1-191 ---------- ---------- --------GE ARDSR----- ---------- ENSP00000391409/1-788 EQGWLQAPSQ GLLGQAQKVF QLQISVSFGQ RQSCQGMVIV KVLPVPSSQV ENSBTAP00000007530/1-784 GQGQLWAPSQ GLKGQAQKVF QLQILVTFGQ GRSCRGMLTV KVLPVSSSQV bmy_06019T0/1-804 GQGWLQAPSQ GLKGQAQKVF QLQILVTFGQ GRSCCGMLTV KVLPAPSSQV BACU002391/1-608 ---------- --------VF QLQILVTFGQ GRSCCGMLTV KVLPAPSSQV 251 300 ENSTTRP00000004594/1-191 ---------- ---------- ------QGVG -RHDLNRTPL TSPLSSWGNH ENSP00000391409/1-788 SFLEQAQNIT IPENLAPGSE VVQVQARGVD LRYEI-LSPV PSPLFSIGRA ENSBTAP00000007530/1-784 SFPQQAQNIT IPENLVPGSK VAQVHAQGFD VRYEI-VSPV PCRLFSIARV bmy_06019T0/1-804 SFLQQAQNIT IPENLVPGSK VVQVQARGFN VCYEI-LSPV PCRLFSIGRV BACU002391/1-608 SFLQQAQNIT IPENLVPGSK VVQVQARGFN VRYEI-LSPV PCRLFSIGRV 301 350 ENSTTRP00000004594/1-191 SG-------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 DGVVRTTTPL ELARTSGTAV SRLQVKAFEQ GQLWASAKLN LTMNVQLVNL ENSBTAP00000007530/1-784 DGVVRTTAPL ELAQAPDAAV TRLRVKAFER LRPWDSAELD FQVDVQSVNR bmy_06019T0/1-804 DGVVRTTSPL ELAQAPDAAV TRLRVKAFER LRPWASAELD FRVDVQSVNR BACU002391/1-608 DGVVRTTSPL ELAQAPDAAV TRLRVKAFER LRPWASAELD FRVDVQSVNR 351 400 ENSTTRP00000004594/1-191 ---------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 WPPRCLPALL VSQIPETAPV GTVLNTLTCE DPDSVGATLD YKLWFRSSSN ENSBTAP00000007530/1-784 WPPRCLPALL ATQIPETTPV GTFVNTFTCT DPDSPGSTLD YQLLFHSPAS bmy_06019T0/1-804 WPPRCTPALL VTQIPETTPV GTVLNTFTCT DPDSPGSTLD YQLLFHSPVG BACU002391/1-608 WPPRCTPALL VTQIPETTPV GTVLNTFTCT DPDSPGSTLD YQLLFHSPAG 401 450 ENSTTRP00000004594/1-191 ---------- -----AR--- ---------- ---------- ---------- ENSP00000391409/1-788 PASLCLYDRV LEVNATL--- ---------- ---------- ---------- ENSBTAP00000007530/1-784 ASSLCLRDGV LEVNDTL--- ---------- ---------- ---------- bmy_06019T0/1-804 AASLCLQDRV LEVPSPRPQT HVQRAWTGRG VGQWSAGAET MRVKEMVVES BACU002391/1-608 TASLCLQDRV LEVNATL--- ---------- ---------- ---------- 451 500 ENSTTRP00000004594/1-191 NC-------- ----QTWGPA VHSAA----- ---------- ---------- ENSP00000391409/1-788 DC-------- ----DTPGAC FQHAASILVL DGGQPQMTTE VPVLVMVTPI ENSBTAP00000007530/1-784 DC-------- ----DAPGAC LQHTASILVL DSGQPPMTTE VPVLVMVTPV bmy_06019T0/1-804 TCFTVWKTEG QGRLSTPGQG WATQASSLT- ---AKWLPAE VPVLVMVTPV BACU002391/1-608 DC-------- ----DTPGAC FHHAASILVL DSGQPLMTTE VPVLVMVTPV 501 550 ENSTTRP00000004594/1-191 --------PR P--------- ---------- ---------- -GSPGEPCTW ENSP00000391409/1-788 NEFSPACAPR TFRVQEDAAP HTLLGSVVGT DMDYPHDNIE YYTSGGPTTF ENSBTAP00000007530/1-784 NEFSPTCVSR TFRVREDARP HTLLGSVMGT DLDYPHDSIE YSISGGSAPF bmy_06019T0/1-804 NEFSPACVPR TFRVREDAGP HALLGSVVGK DMDYPHDSIE YSTPGGSATF BACU002391/1-608 NEFSPACVPR TFRVREDAGP HALLGSVVGK DMDYPHDSIE YSTPGGSATF 551 600 ENSTTRP00000004594/1-191 G--------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 AVDRLSGEVH LLGPLDYEQQ RLYRLTVLVI DHGQDQNPNH HLSGSCTITI ENSBTAP00000007530/1-784 AVDSLNGEVH LLGPLDYEMQ KSYRLTVLLT DHSQDQDPTC HRSGSCTITI bmy_06019T0/1-804 AVDRLSGEVR LLGPLDYELQ KLHRLTVLLT DHSQDQDPTC HRSGSCTITI BACU002391/1-608 AVDRLSGEVR LLGPLDYELQ KLHRLTVLLT DHSQDQDPTC HRSGSCTITI 601 650 ENSTTRP00000004594/1-191 ---------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 EVEDVNDHAP ECEPPFQELT IYAPLGRSVE VTKMSCQIPQ EPQRLIYSYS ENSBTAP00000007530/1-784 EVEDVNDHAP ECEPPFQELT VYAHLGRSLE VTTVSCRVAQ EPQRLAFSYR bmy_06019T0/1-804 EVEDVNDHAP ECEPPFQELT IHTHLGRSME VTRVSCRVPQ EPQRLAFSYS BACU002391/1-608 EVEDVNDHAP ECEPPFQELT IHTHLGRSME VTRVSCQVPQ EPQRLAFSYS 651 700 ENSTTRP00000004594/1-191 --GGG----- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 IVGGNSQNRF ILQGAILVHS DLVLGPFWPE QPRTYELLIC VADAGPSTPH ENSBTAP00000007530/1-784 IVGGNSQSRF SLQGAVLVHN DLMLAPPWPE QSHTYELLIR VADAGPSTPH bmy_06019T0/1-804 IVGGNSRSQF SLQGAVLVHN DLMLGPSWPE QPHTYELLIR VADAGPSTPH BACU002391/1-608 IVGGNSRSQF SLQGAVLVHN DLMLGPSWPE QPHTYELLIR VADAG----- 701 750 ENSTTRP00000004594/1-191 ---------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 LSTTATIIVH LVPRRASTVA TSTHRTTVPS TMTPMLVTDT EAFWQPQPWF ENSBTAP00000007530/1-784 LSTTATVIVH IVPWRASTGA TSIHRTTVPS RMTPLLVTDT EVFWQPEPWF bmy_06019T0/1-804 LSTTATVIVH LVPWRAS--- ------TVTS MMTPLLVTDT EAFWQPEPWF BACU002391/1-608 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000004594/1-191 ---------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 VVVLTATGAL LLLALGWLLG RLLQGLAQLL QAPSKPAQAL LLNSIQGTEG ENSBTAP00000007530/1-784 VVVLTVTSAL LLLGLGWFLS WLLRGLTQVL QTSSKPTQAL LLNSIQGTKG bmy_06019T0/1-804 VVVLTVTSAL LLLALGWLLS RLLRGLAQVL QAPSKPTQAL LLNSIQGTEG BACU002391/1-608 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000004594/1-191 ---------- ---------- ---------- ---------- ---------- ENSP00000391409/1-788 SIEGFLEAPK MEMSQAPSSV MSL-HFDGRA QDSRTGRDYL FNTHTGARRW ENSBTAP00000007530/1-784 SIEGFVEAPR METPQAPSSV MSLHHFDGRA QDSRTGRDYL FNTHTGARRW bmy_06019T0/1-804 SVEGFMEAPR METPQAPSSV MSL------- ---------- ---------- BACU002391/1-608 ---------- ---------- ---------- ----TGRDYL FNTHTGARRW 851 900 ENSTTRP00000004594/1-191 - ENSP00000391409/1-788 L ENSBTAP00000007530/1-784 L bmy_06019T0/1-804 - BACU002391/1-608 L