KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:18 2014 Check: 00 .. Name: ENSTTRP00000014854/1-1177 Len: 1251 Check: 3349 Weight: 1.00 Name: ENSBTAP00000007542/1-1251 Len: 1251 Check: 3636 Weight: 1.00 Name: ENSP00000445359/1-1251 Len: 1251 Check: 9307 Weight: 1.00 Name: bmy_07077T0/1-887 Len: 1251 Check: 6439 Weight: 1.00 Name: BACU014891/1-1251 Len: 1251 Check: 779 Weight: 1.00 // 1 50 ENSTTRP00000014854/1-1177 MNTERDSETT FEEDSQPNDE VVPYSDDETE DELEDQGPAV EPEQNRVNRE ENSBTAP00000007542/1-1251 MSTERDSETT FDEDSQPNDE VVPYSDDETE DELDYHEPAV EPQQNRVNKE ENSP00000445359/1-1251 MSTERDSETT FDEDSQPNDE VVPYSDDETE DELDDQGSAV EPEQNRVNRE bmy_07077T0/1-887 MNTERDSETT FEEDSQPNDE VVPYSDDETE DELEDQERAV EPEQNRVNRE BACU014891/1-1251 MNTERDSETT FEEDSQPNDE VVPYSDDETE DELEDRERAV EPEQNRVNRE 51 100 ENSTTRP00000014854/1-1177 AEENREPFKK DCTWQVKAND RSFHEQPHFM NTKFFCIKES KYATNAIKTY ENSBTAP00000007542/1-1251 AEETREPFKK DCTWQVKAND RRFHEQPQFM NTVFFCIKES KYANNAIKTY ENSP00000445359/1-1251 AEENREPFRK ECTWQVKAND RKYHEQPHFM NTKFLCIKES KYANNAIKTY bmy_07077T0/1-887 AEENWEPFKK GNTL------ ---------- --------GP GNENNAIRTY BACU014891/1-1251 AEENREPFKK DCTWQVKAND RNFHEQPHFM NTKFFCIKES KYANNAIRTY 101 150 ENSTTRP00000014854/1-1177 KYNAFTFLPM NLFEQFKRAA NFYFLVLLIL QXXXXXXXXX XXXXXXXXXX ENSBTAP00000007542/1-1251 KYNALTFLPM NLFEQFKRAA NFYFLVLLIL QAIPQISTLA WYTTLVPLLV ENSP00000445359/1-1251 KYNAFTFIPM NLFEQFKRAA NLYFLALLIL QAVPQISTLA WYTTLVPLLV bmy_07077T0/1-887 KYNAFTFLPM NLFEQFKRAA NFYFLVLLIL QAIPQITTLA WYTTLVPLLV BACU014891/1-1251 KYNAFTFLPM NLFEQFKRAA NFYFLVLLIL QAIPQITTLA WYTTLVPLLV 151 200 ENSTTRP00000014854/1-1177 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXFKIAK WKEIQVGDVI ENSBTAP00000007542/1-1251 VLGVTAVKDL VDDVARHKMD KEVNNRTCEV IKDGRFKVAK WKDIQVGDVI ENSP00000445359/1-1251 VLGVTAIKDL VDDVARHKMD KEINNRTCEV IKDGRFKVAK WKEIQVGDVI bmy_07077T0/1-887 VLGITAIKDL VDDV------ ---------- ---------- ---------- BACU014891/1-1251 VLGITAIKDL VDDVARHKMD NEINNRTCEV IKDSRFKIAK WKEIQVGDVI 201 250 ENSTTRP00000014854/1-1177 RLKKNDFIPA DILLLSSSEP NSLCYVETAE LDGXXXXXXX XXXXXXXXXX ENSBTAP00000007542/1-1251 RLKKNDFIPA DILLLSSSEP NSLCYVETAE LDGETNLKFK MALEITHQYL ENSP00000445359/1-1251 RLKKNDFVPA DILLLSSSEP NSLCYVETAE LDGETNLKFK MSLEITDQYL bmy_07077T0/1-887 ---------A DILLLSSSEP NSLCYVETAE LDGETNLKFR MALEITHQYL BACU014891/1-1251 RLKKNDFIPA DILLLSSSEP NSLCYVETAE LDGETNLKFK MALEITHQYL 251 300 ENSTTRP00000014854/1-1177 XXXXXXATFD GFIECEEPNN RLDKFTGTLF WRNTSFPLDA DKILLRGCVI ENSBTAP00000007542/1-1251 QEENSLATFD GFIECEEPNN RLDKFTGTLF WKNTSFPLDA DKILLRGCVI ENSP00000445359/1-1251 QREDTLATFD GFIECEEPNN RLDKFTGTLF WRNTSFPLDA DKILLRGCVI bmy_07077T0/1-887 QEEDSLAIFD GFIECEEPNN RLDKFTGTLF WRDTSFPLDA DKILLRGCVI BACU014891/1-1251 QKENSLAAFD GFIECEEPNN RLDKFTGTLF WRNTSFPLDA DKILLRGCVI 301 350 ENSTTRP00000014854/1-1177 RNTDFCHGLV IFAGADTKIM KNSGKTRFKR TKIDYLMNYM VYTIFVVLIL ENSBTAP00000007542/1-1251 RNTDFCHGLV IFAGADSKIM KNSGKTRFKR TKIDYLMNYM VYTIFVVLIL ENSP00000445359/1-1251 RNTDFCHGLV IFAGADTKIM KNSGKTRFKR TKIDYLMNYM VYTIFVVLIL bmy_07077T0/1-887 RNTDFCHGLV IFAGADTKIM KNSGKTRFKR TKIDYLMNYM VYTIFVVLIL BACU014891/1-1251 RNTDFCHGLV IFAGADTKIM KNSGKTRFKR TKIDYLMNYM VYTIFVVLIL 351 400 ENSTTRP00000014854/1-1177 LSAGLAIGHA YWEAQVGNYS WYLYDGEDTT PSYRGFLNFW GYIIVLNTLV ENSBTAP00000007542/1-1251 LSAGLAIGHA YWEAQVGNFS WYLYDGEDST PSYRGFLNFW GYIIVLNTLV ENSP00000445359/1-1251 LSAGLAIGHA YWEAQVGNSS WYLYDGEDDT PSYRGFLIFW GYIIVLNTMV bmy_07077T0/1-887 LSAGLAIGHA YWEAQIGNFS WYLYDGEDAT PSYRGFLNFW GYIIVLNTLV BACU014891/1-1251 LSAGLAIGHA YWEAQIGNFS WYLYDGEDAT PSYRGFLNFW GYIIVLNTLV 401 450 ENSTTRP00000014854/1-1177 PISLYVSVEV IRLGQSYFIN WDLQMYYPEK DTPAKARTTT LNEQLGQIHY ENSBTAP00000007542/1-1251 PISLYVSVEV IRLGQSYFIN WDLQMYYPEK DTPAKARTTT LNEQLGQIHY ENSP00000445359/1-1251 PISLYVSVEV IRLGQSHFIN WDLQMYYAEK DTPAKARTTT LNEQLGQIHY bmy_07077T0/1-887 PISLYVSVEV IRLGQSYFIN WDLQMYYPEK DTPAKARTTT LNEQLGQIHY BACU014891/1-1251 PISLYVSVEV IRLGQSYFIN WDLQMYYPEK DTPAKARTTT LNEQLGQIHY 451 500 ENSTTRP00000014854/1-1177 IFSDKTGTLT QNIMTFKKCC INGQIYGDHR DASQNSHSKI EPVDFSWNTY ENSBTAP00000007542/1-1251 IFSDKTGTLT QNVMTFKKCC INGQIYGDHR DASQNSHSKI EPVDFSWNAF ENSP00000445359/1-1251 IFSDKTGTLT QNIMTFKKCC INGQIYGDHR DASQHNHNKI EQVDFSWNTY bmy_07077T0/1-887 IFSDKTGTLT QNIMTFKKCC INGQIY---- ---------- --VDFSWNMY BACU014891/1-1251 IFSDKTGTLT QNIMTFKKCC INGQIYGDHR DASQNSHNKI DPVDFSWNMY 501 550 ENSTTRP00000014854/1-1177 SDGKLVFYDH YLVEQIQSGK EPEVRQFFFL LAVCHTVMVD RLDGQLNYQA ENSBTAP00000007542/1-1251 ADGKLEFYDH YLIEQIQSGK QPEVQQFFFL LAMCHTVMAD RLNGQLNYQA ENSP00000445359/1-1251 ADGKLAFYDH YLIEQIQSGK EPEVRQFFFL LAVCHTVMVD RTDGQLNYQA bmy_07077T0/1-887 SDGKLVFYDH YLIEQIQLGK EPEVRQFFFL LAVCHTVMVD RLDGQLNYQA BACU014891/1-1251 SDGKLVFYDH SLIEQIQLGK EPEVQQFFFL LAVCHTVMVD RLDGQLNYQA 551 600 ENSTTRP00000014854/1-1177 ASPDEGALVS AARNFGFVFL TRTQNTITIS ELGTERTYSV LAILDFNSDR ENSBTAP00000007542/1-1251 ASPDEGALVS AARNFGFVFL GRTQNTITIS ELGTERTYHV LALLDFNSDR ENSP00000445359/1-1251 ASPDEGALVN AARNFGFAFL ARTQNTITIS ELGTERTYNV LAILDFNSDR bmy_07077T0/1-887 ASPDEGALVS AARNFGFAFL TRTQNTITIS ELGTERTYNV LAILDFNSDR BACU014891/1-1251 ASPDEGALVS AARNFGFAFL TRTQNTITIS ELGTERTYNV LAILDFNSDR 601 650 ENSTTRP00000014854/1-1177 KRMSIIVRTL EGNIRLYCKG ADTVIYERLH RMNPTKQETQ DALDIFAGET ENSBTAP00000007542/1-1251 KRMSIIVRTP EGNIRLYCKG ADTVIYERLH QTSPMKQETQ DALDIFANET ENSP00000445359/1-1251 KRMSIIVRTP EGNIKLYCKG ADTVIYERLH RMNPTKQETQ DALDIFANET bmy_07077T0/1-887 KRMSIIVRTP EGNIRLYCKG ADTVIYERLH RMNPMKQETQ DALDIFASET BACU014891/1-1251 KRMSIIVRTP EGNIRLYCKG ADTVIYERLH RMNPMKQETQ DALDIFASET 651 700 ENSTTRP00000014854/1-1177 LRTLCLCYKE IEEKEFEEWN KKFMAASIAS TNRDEALDKV YEEIEKDLIL ENSBTAP00000007542/1-1251 LRTLCLCYKE IEEKEFEEWN KKFMAASIAS TNRDEALDKV YEEIEKDLIL ENSP00000445359/1-1251 LRTLCLCYKE IEEKEFTEWN KKFMAASVAS TNRDEALDKV YEEIEKDLIL bmy_07077T0/1-887 LRTLCLCYKE IEEKEFEEWN KKFMAASIAS TNRDEALDKV YEEIEKDLI- BACU014891/1-1251 LRTLCLCYKE IEEKEYEEWN KKFMAASIAS TNRDEALDKV YEEIEKDLIL 701 750 ENSTTRP00000014854/1-1177 LGATAIEDKL QDGVPETISK LAKADIKIWV LTGDKKETAE NIGFACELLT ENSBTAP00000007542/1-1251 LGATAIEDKL QDGVPETISK LSKADIKIWV LTGDKKETAE NIGFACELLT ENSP00000445359/1-1251 LGATAIEDKL QDGVPETISK LAKADIKIWV LTGDKKETAE NIGFACELLT bmy_07077T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU014891/1-1251 LGATAIEDKL QDGVPETISK LAKADIKIWV LTGDKKETAE NIGFACELLT 751 800 ENSTTRP00000014854/1-1177 EDTTICYGED IXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007542/1-1251 EDTTICYGED ISALLHTRME NQRNRGGVYA KFVPQVYEPF FPSGGNRALI ENSP00000445359/1-1251 EDTTICYGED INSLLHARME NQRNRGGVYA KFAPPVQESF FPPGGNRALI bmy_07077T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU014891/1-1251 EDTTICYGED ISALLHTRME NQRNRSGVYA RFVPQVHEPF FPPGGNRALI 801 850 ENSTTRP00000014854/1-1177 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ ENSBTAP00000007542/1-1251 ITGSWLNEIL LEKKSKRSKI PKLKFPRTEE EQRLRTQSMR KLEVRKEQQQ ENSP00000445359/1-1251 ITGSWLNEIL LEKKTKRNKI LKLKFPRTEE ERRMRTQSKR RLEAKKEQRQ bmy_07077T0/1-887 ------NEIL LEKKTKRSKI LKLKFPRTEE ERRMRTQSKR RLEAKKEQQQ BACU014891/1-1251 ITGSWLNEIL LEKKTKRSKI LKLKFPRTEE ERRMRTQSKR RLEAKKEQQQ 851 900 ENSTTRP00000014854/1-1177 QNFVDLACEC SAVICCRVTP KQKAMVVDLV KRYKKAITLA IGDGANDVNM ENSBTAP00000007542/1-1251 QNFVDLACEC SAVICCRVTP KQKAMVVDLV KRYKKAITLA IGDGANDVNM ENSP00000445359/1-1251 KNFVDLACEC SAVICCRVTP KQKAMVVDLV KRYKKAITLA IGDGANDVNM bmy_07077T0/1-887 QNFVDLACEC SAVICCRVTP KQKAMVVDLV KRYKKAITLA IGDGANDVNM BACU014891/1-1251 QNFVDLACEC SAVICCRVTP KQKAMVVDLV KRYKKAITLA IGDGANDVNM 901 950 ENSTTRP00000014854/1-1177 IKTAHIGVGI SGQXXXXXXX XXXYSFAQFK ILQRLLLVHG SGSYIRMCKF ENSBTAP00000007542/1-1251 IKTAHIGVGI SGQEGMQAVM SSDYSFAQFR YLQRLLLVHG RWSYIRMCKF ENSP00000445359/1-1251 IKTAHIGVGI SGQEGMQAVM SSDYSFAQFR YLQRLLLVHG RWSYIRMCKF bmy_07077T0/1-887 IKTAHIGVGI SGQEGMQAVM SSDYSFAQFR YLQRLLLVHG RWSYIRMCKF BACU014891/1-1251 IKTAHIGVGI SGQEGMQAVM SSDYSFAQFR YLQRLLLVHG RWSYIRMCKF 951 1000 ENSTTRP00000014854/1-1177 LRYFFYKNFS FTLVHFWYSF FNGYSAQTAY EDWFITLYNV IYTSLPVLLM ENSBTAP00000007542/1-1251 LRYFFYKNFA FTLVHFWYSF FNGYSAQTAY EDWFITLYNV LYSSLPVLLM ENSP00000445359/1-1251 LRYFFYKNFA FTLVHFWYSF FNGYSAQTAY EDWFITLYNV LYTSLPVLLM bmy_07077T0/1-887 LRYFFYKNFA FTLVHFWYSF FNGYSAQTAY EDWFITLYNV LYSSLPVLLM BACU014891/1-1251 LRYFFYKNFA FTLVHFWYSF FNGYSAQTAY EDWFITLYNV LYSSLPVLLM 1001 1050 ENSTTRP00000014854/1-1177 GLLDQDVSDK LSLRFPGLYM VGQRDLLFNY RRFFVSLLHG VLTSLVLFFI ENSBTAP00000007542/1-1251 GLLNQDVSDK LSLRFPSLYI VGQRDLLFNY RKFFVSLLHG ALTSLVLFFI ENSP00000445359/1-1251 GLLDQDVSDK LSLRFPGLYI VGQRDLLFNY KRFFVSLLHG VLTSMILFFI bmy_07077T0/1-887 GLLDQ----- ---------- ---------- ---------- ---------- BACU014891/1-1251 GLLDQDVSDK LSLRFPGLYV VGQRDLLFNY RRFFVSLLHG VLTSLILFFI 1051 1100 ENSTTRP00000014854/1-1177 PLGAYLQTVG QDGEAPSDYQ SFAVTIASAL VVTVNFQIGL DTSYWTFVNA ENSBTAP00000007542/1-1251 PYGAYMQTMG QDGEAPSDYQ SFAVTIASAL VITVNFQIGL DTSYWTFVNA ENSP00000445359/1-1251 PLGAYLQTVG QDGEAPSDYQ SFAVTIASAL VITVNFQIGL DTSYWTFVNA bmy_07077T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU014891/1-1251 PFGAYLQTVG QDGEAPSDYQ SFAVTIASAL IITVNFQIGL DTSYWTFVNA 1101 1150 ENSTTRP00000014854/1-1177 FSIFGSIAIY FGIMFDLHSA GIHVLFPSAF QFTGTASNAL RQPYIWLTII ENSBTAP00000007542/1-1251 FSIFGSIALY FGIMFDFHSA GIHVLFPSAF QFTGTASNAL RQPYIWLTII ENSP00000445359/1-1251 FSIFGSIALY FGIMFDFHSA GIHVLFPSAF QFTGTASNAL RQPYIWLTII bmy_07077T0/1-887 ---------- ---------- ---------- ---------- ---------- BACU014891/1-1251 FSIFGSIALY FGIMFDFHSA GIHVLFPSAF QFTGTASNAL RQPYIWLTII 1151 1200 ENSTTRP00000014854/1-1177 LTVAVCLLPV VATRFLSMTI WPSESDK--- ---------- ---------- ENSBTAP00000007542/1-1251 LTVAVCLLPV VAIRFLSMTI WPSESDKIQK HRKQLKAEEQ WQRRQHVFRR ENSP00000445359/1-1251 LAVAVCLLPV VAIRFLSMTI WPSESDKIQK HRKRLKAEEQ WQRRQQVFRR bmy_07077T0/1-887 ---------- ---------- -------IQK HRKQLKTEEQ WKRRQNVFRR BACU014891/1-1251 LTVAVCLLPV VAIRFLSMTI WPSESDKIQK HRKQLKAEEQ WKRRQNVFRR 1201 1250 ENSTTRP00000014854/1-1177 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007542/1-1251 DVSTRRSAYA FSHQRGYADL ISSGRSIRKK RSPLDGVIAD ASAAYRRTAE ENSP00000445359/1-1251 GVSTRRSAYA FSHQRGYADL ISSGRSIRKK RSPLDAIVAD GTAEYRRTGD bmy_07077T0/1-887 GVSRRRSAYA FSHQRGYADL ISSGRSIRKK RYPLDAVIAD GTAEYRRTME BACU014891/1-1251 GVSRRRSAYA FSHQRGYADL ISSGRSIRKK RYPLDAVIAD GTAEYRRTME 1251 1300 ENSTTRP00000014854/1-1177 - ENSBTAP00000007542/1-1251 S ENSP00000445359/1-1251 S bmy_07077T0/1-887 S BACU014891/1-1251 S