KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:19 2014 Check: 00 .. Name: BACU002009/1-214 Len: 425 Check: 8389 Weight: 1.00 Name: ENSP00000310873/1-421 Len: 425 Check: 5711 Weight: 1.00 Name: ENSTTRP00000005330/1-409 Len: 425 Check: 7633 Weight: 1.00 Name: ENSBTAP00000007549/1-371 Len: 425 Check: 3565 Weight: 1.00 Name: bmy_20966T0/1-274 Len: 425 Check: 6853 Weight: 1.00 // 1 50 BACU002009/1-214 ---------- ---------- ---------- ---------- ---------- ENSP00000310873/1-421 MTPISQVRMR KGSAHTAAQP GRLGLHPAGA TAHACRGMTS IRARP----G ENSTTRP00000005330/1-409 ILPVSR---- --YSKSSDQP V-----PADV TAHACLGMTS APAGP----A ENSBTAP00000007549/1-371 ---------- ---------- ---------- ---------- ---------- bmy_20966T0/1-274 ---------- ---------- ---------- -MPACDRTLG NDVRPLRVHA 51 100 BACU002009/1-214 ----MLGAAG AGLVRGLRAG TQ-------- ---------- ---------- ENSP00000310873/1-421 LTSAMLGSRA AGFARGLRAV ALAWLPGWRG RSFALARAAG APHGGDLQPP ENSTTRP00000005330/1-409 LRSAMLGASG TGLVRALRAG TQVWLWGSRG RSLTLPHAAR GLHAGDWRPS ENSBTAP00000007549/1-371 ----MLGSCG AGLVRGLRAE TQAWLWGTRG RSLALVHAAR GLHAANWQPS bmy_20966T0/1-274 LRSAMLG--- AGLVRGLRAG TQVWLWGSRG RSLTLPHAAR GLHAGDRRPS 101 150 BACU002009/1-214 ---------- ---------- ---------- ---------- ---------- ENSP00000310873/1-421 ACPEPRGRQL SLSAAAVVDS APRPLQPYLR LMRLDKPIGT WLLYLPCTWS ENSTTRP00000005330/1-409 AGRGPLERRP SLPAAAIVNS APRPLQPYLR LMRLDKPIGT WLLYLPCTWS ENSBTAP00000007549/1-371 PGQGPRGRPL SLSAAAVVNS APRPLQPYLR LMRLDKPIGT WLLYLPCTWS bmy_20966T0/1-274 AGRGPLERRP SLPAVAIVNS APRPLQPYLR LMRLDKPIGT WLLYLPCTWS 151 200 BACU002009/1-214 ---------- ---------- ---------- ---------- ----VTRTAS ENSP00000310873/1-421 IGLAAEPGCF PDWYMLSLFG TGAILMRGAG CTINDMWDQD YDKKVTRTAN ENSTTRP00000005330/1-409 IGLAAEPGCF PDWYMLSLFG TGAVLMRGAG CTINDMWDQD YDKKVTRTAS ENSBTAP00000007549/1-371 IGLAADPGCL PDWYMLSLFG TGAVLMRGAG CTINDMWDRD YDKKVTRTAS bmy_20966T0/1-274 IGLAAEPGCF PDWYMLSLFG TGAVLMRGAG CTINDMWDQD YDKKVTRTAS 201 250 BACU002009/1-214 RPIAAGDIST FQSFVFLGGQ LTLALAVLLC LNYYRKILRA YPLFPLITCK ENSP00000310873/1-421 RPIAAGDIST FQSFVFLGGQ LTLALGVLLC LNYYSIALGA GSLLLVITYP ENSTTRP00000005330/1-409 RPIAAGDIST FQSFVFLGGQ LTLALGVLLC LNYYSIALGA ASLLLVITYP ENSBTAP00000007549/1-371 RPIAAGDIST FRSFVFLGGQ LTLALGVLLC LNYYSIALGA ASLLLVTTYP bmy_20966T0/1-274 RPIAAGDIST FQSFVFLGGQ LTLALGVLLC LNYYSIALGA ASLLLVITYP 251 300 BACU002009/1-214 HLEDKH---- ---------- ---------- --------SL HMDGAASNMA ENSP00000310873/1-421 LMKRISYWPQ LALGLTFNWG ALLGWSAIKG SCDPSVCLPL YFSGVMWTLI ENSTTRP00000005330/1-409 LMKRITYWPQ LALGLTFNWG ALLGWSAVKG SCDPSVCLPL YFSGIMWTLI ENSBTAP00000007549/1-371 LMKRITYWPQ LALGLTFNWG ALLGWSAVKG SCDPSVCLPL YFSGIMWTLI bmy_20966T0/1-274 LMKRITYWPQ LAL------- ---------- ---------- ---------- 301 350 BACU002009/1-214 LDT---SQDK RDDALIGLKS TALLFREDTK QWLSGFTVAM LGALSLVGVN ENSP00000310873/1-421 YDTIYAHQDK RDDVLIGLKS TALRFGENTK PWLSGFSVAM LGALSLVGVN ENSTTRP00000005330/1-409 YDTIYAHQDK RDDALIGLKS TALLFREDTK QWLSGFTVAM LGALSLLGV- ENSBTAP00000007549/1-371 YDTIYAHQDK KDDALIGLKS TALLFREDTK KWLSGFSVAM LGALSLVGVN bmy_20966T0/1-274 ---------- ---------- -------DTK QWLSGFTVAM LGALSLVGVN 351 400 BACU002009/1-214 IGQTVPYYTA LAAVGAHLAH QIYTLDIHRP EDCWDKFTSN RTTGLIIFLG ENSP00000310873/1-421 SGQTAPYYAA LGAVGAHLTH QIYTLDIHRP EDCWNKFISN RTLGLIVFLG ENSTTRP00000005330/1-409 IDQTVPYYXX XXXXXXXXXX XIYTLDIHRP EDCWDKFTSN RTIGLIIFLG ENSBTAP00000007549/1-371 SGQTMPYYTA LAAVGAHLAH QIYTLDIHRP EDCWEKFTSN RTIGLIIFLG bmy_20966T0/1-274 IGQTVPYYTA LAAVGAHLAH QV-------- ---------- ---------- 401 450 BACU002009/1-214 IVLGNLWKEK EIDKTKKNID NRIEN ENSP00000310873/1-421 IVLGNLWKEK KTDKTKKGIE NKIEN ENSTTRP00000005330/1-409 IVLGNLWKEK ETDKTKKNID NRVEN ENSBTAP00000007549/1-371 IVLGNLCKAK ETDKTRKNIE NRMEN bmy_20966T0/1-274 ---------- ---------- -----