KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:19 2014 Check: 00 .. Name: ENSP00000384262/1-543 Len: 547 Check: 7286 Weight: 1.00 Name: ENSBTAP00000007550/1-545 Len: 547 Check: 4726 Weight: 1.00 Name: ENSTTRP00000004606/1-541 Len: 547 Check: 6076 Weight: 1.00 Name: bmy_20965T0/1-497 Len: 547 Check: 6211 Weight: 1.00 Name: BACU002008/1-517 Len: 547 Check: 1666 Weight: 1.00 // 1 50 ENSP00000384262/1-543 MLLRSKPALP PPLMLL--LL GPLGPLSPGA LPRPAQAQDV VDLDFFTQEP ENSBTAP00000007550/1-545 MLACRKPGLR PPLLLLLPLL GPLGPCSPGT PAAAAPADDA AELEFFTERP ENSTTRP00000004606/1-541 MLLSWKPGLP LRLLL---LL GPLCPCSPGA LAELAPAEDV VVLVFSTERP bmy_20965T0/1-497 MLLRWKPGLP LPLLL---FL GPLCPRSPGA LAEPAPADDV VELLFSTERP BACU002008/1-517 MLPRWKPGLA LPLLL---FL GPLCPRSPGA LAEPAPADDV VELLFSTERP 51 100 ENSP00000384262/1-543 LHLVSPSFLS VTIDANLATD PRFLILLGSP KLRTLARGLS PAYLRFGGTK ENSBTAP00000007550/1-545 LHLVSPAFLS FTIDANLATD PRFFTFLGSS KLRTLARGLA PAYLRFGGNK ENSTTRP00000004606/1-541 VHLVSPAFLS FTIDANLATD PRFLTFLGSS KLRTLARGLS PAYLRFGGTK bmy_20965T0/1-497 VHLVSPAFLS FTIDANLATD PRFLTFLGSS KLRTLARGLS PAYLRFGGTK BACU002008/1-517 VHLVSPAFLS FTIDANLATD PRFLTFLGSS KLRTLARGLS PAYLRFGGTK 101 150 ENSP00000384262/1-543 TDFLIFDPKK ESTFEERSYW QSQVNQDICK YGSIPPDVEE KLRLEWPYQE ENSBTAP00000007550/1-545 GDFLIFDPKK EPAFEERSYW LSQSNQDICK SGSIPSDVEE KLRLEWPFQE ENSTTRP00000004606/1-541 TDFLIFDPKK EPTFEERSYW QSQVNQDICE SGSVPSDVER RLKLEWPFQE bmy_20965T0/1-497 TDFLIFDPKK EPTFEERSYW QSQVNQDICE SGSVPSDVER RLKLEWPFQE BACU002008/1-517 TDFLIFDPKK EPTFEERSYW QSQVNQDICE SGSVPSDVER RLKLEWPFQE 151 200 ENSP00000384262/1-543 QLLLREHYQK KFKNSTYSRS SVDVLYTFAN CSGLDLIFGL NALLRTADLQ ENSBTAP00000007550/1-545 QVLLREQYQK KFTNSTYSKH SVDMLYTFAS CSGLNLIFGL NALLRTTDMH ENSTTRP00000004606/1-541 QLLLREQYQK KFRNSTYSRS SVDMLYTFAS CSGLDLIFGL NALLRTADLH bmy_20965T0/1-497 QLLLREQYQK KFKNSTYSRS SVDMLYTFAS CSGLDLIFGL NALLRTADLH BACU002008/1-517 QLLLREQYQK KFKNSTYSRS SVDMLYTFAS CSGLDLIFGL NALLRTADLH 201 250 ENSP00000384262/1-543 WNSSNAQLLL DYCSSKGYNI SWELGNEPNS FLKKADIFIN GSQLGEDFIQ ENSBTAP00000007550/1-545 WDSSNAQLLL DYCSSKNYNI SWELGNEPNS FQRKAGIFIN GRQLGEDFIE ENSTTRP00000004606/1-541 WNSSNAQLLL DYCSSKSYNI SWELGNEPNS FRKKAGIFID GLQLGEDFME bmy_20965T0/1-497 WNSSNAQLLL DYCSSKSYNI SWELGNEPNS FWKKAGIFID GLQLGEDFME BACU002008/1-517 WNSSNAQLLL DYCSSKSYNI SWELGNEPNS FRKKAGIFID GLQLGEDFME 251 300 ENSP00000384262/1-543 LHKLLRKSTF KNAKLYGPDV GQPRRKTAKM LKSFLKAGGE VIDSVTWHHY ENSBTAP00000007550/1-545 FRKLLGKSAF KNAKLYGPDI GQPRRNTVKM LKSFLKAGGE VIDSVTWHHY ENSTTRP00000004606/1-541 LHKLLGKSAF KNAKLYGPDV GQPRGKTVKM LKSFLKAGGE VIDSVTWHHY bmy_20965T0/1-497 LHKLLRKSAF KNAKLYGPDV GQPREKTVKM LKSFLKAGGE VIDSVTWHHY BACU002008/1-517 LHKLLRKSAF KNAKLYGPDV GQPRGKTVKM LKS------- ---------Y 301 350 ENSP00000384262/1-543 YLNGRTATKE DFLNPDVLDI FISSVQKVFQ VVESTRPGKK VWLGETSSAY ENSBTAP00000007550/1-545 YVNGRIATKE DFLNPDILDT FISSVQKTLR IVEKIRPLKK VWLGETSSAF ENSTTRP00000004606/1-541 YL-WRVATKE DFLNPDVLDT FISSVQKFXX AVEETRPHKK VWLGETSSAY bmy_20965T0/1-497 YLNGRIATKE DFLNPDVLDT FISSVQKIFQ AVEETRPHKK VWLGETSSAY BACU002008/1-517 YLNGRIATKE DFLNPDVLDT FISSVQEIFQ AVEETRPHKK VWLGETSSAY 351 400 ENSP00000384262/1-543 GGGAPLLSDT FAAGFMWLDK LGLSARMGIE VVMRQVFFGA GNYHLVDENF ENSBTAP00000007550/1-545 GGGAPFLSNT FAAGFMWLDK LGLSARMGIE VVMRQVLFGA GNYHLVDGNF ENSTTRP00000004606/1-541 GGGAPLLSNT FAAGFMWLDK LGLSARMGIE VVMRQVFFGA GNYHLVDENF bmy_20965T0/1-497 GGGAPLLSNT FAAGFMWLDK LGLSARMGIE VVMRQVFFGA GNYHLVDENF BACU002008/1-517 GGGAPLLSNA FAAGFMWLDK LGLSARMGIE VVMRQVFFGA GNYHLVDENF 401 450 ENSP00000384262/1-543 DPLP--DYWL SLLFKKLVGT KVLMASVQGS KRRKLRVYLH CTNTDNPRYK ENSBTAP00000007550/1-545 EPLP--DYWL SLLFKKLVGN KVLMASVKGP DRSKLRVYLH CTNTKHPRYK ENSTTRP00000004606/1-541 EPLP--DYWL SLLFKKLVGT NVLMASVKGP DRNKLRVYLH CTNINHPXXX bmy_20965T0/1-497 EPLPVSDHYF PII--KLVGT NVLMASVKGP DRNKLRVYLH CTNINHPRYK BACU002008/1-517 EPLP------ -----KLVGT NVLMASVKGP DRNKLRVYLH CTNINHPRYK 451 500 ENSP00000384262/1-543 EGDLTLYAIN LHNVTKYLRL PYPFSNKQVD KYLLRPLGPH GLLSKSVQLN ENSBTAP00000007550/1-545 EGDLTLYALN LHNVTKHLEL PHHLFNKQVD KYLIKPSGPD GLLSKSVQLN ENSTTRP00000004606/1-541 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSVQLN bmy_20965T0/1-497 EGDLTLYALN LHNVTKRLRL PHHLFDKQVD KYLIKPSGPN GLFSN----- BACU002008/1-517 EGDLTLYALN LHNVTKRLQL PHHLFDKQVD KYLIKPSGPN GLFSKSVQLN 501 550 ENSP00000384262/1-543 GLTLKMVDDQ TLPPLMEKPL RPGSSLGLPA FSYSFFVIRN AKVAACI ENSBTAP00000007550/1-545 DQILKMVDEQ TLPALTEKPL HPGSSLGMPP FSYGFFVIRN AKVAACI ENSTTRP00000004606/1-541 GQTLKMVDDQ TLPALTEKPL RPGSSLGLPA LSYGFFVIRN AKVAACI bmy_20965T0/1-497 ---------- ---------- ---------- FDFKFQQ--- ------- BACU002008/1-517 GQTLKMVDDQ TLPALTEKPL RPGSSLGLPA LSYGFFVIRN AKVAACI