KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:20 2014 Check: 00 .. Name: ENSTTRP00000014745/1-506 Len: 528 Check: 2175 Weight: 1.00 Name: ENSBTAP00000007571/1-512 Len: 528 Check: 6845 Weight: 1.00 Name: ENSP00000254108/1-526 Len: 528 Check: 9348 Weight: 1.00 Name: bmy_00722T0/1-514 Len: 528 Check: 1435 Weight: 1.00 Name: BACU011957/1-514 Len: 528 Check: 2787 Weight: 1.00 // 1 50 ENSTTRP00000014745/1-506 -----YTQQA TQSYGAYPTQ PGQGYSQQSN QPYGQQSYSG YGQSPDASGY ENSBTAP00000007571/1-512 MASNDYTQQA TQSYGAYPTQ PGQGYSQQSN QPYGQQSYGG YGQSTDTSGY ENSP00000254108/1-526 MASNDYTQQA TQSYGAYPTQ PGQGYSQQSS QPYGQQSYSG YSQSTDTSGY bmy_00722T0/1-514 -MVEDYTQQA TQSYGAYPTQ PGQGYSQQSN QPYGQQSYSG YGQSTDTSGY BACU011957/1-514 MASNDYTQQA TQSYGAYPTQ PGQGYSQQSN QPYGQQSYGG YGQSTDTSGY 51 100 ENSTTRP00000014745/1-506 GQSSYGSSYG QTQNTGYGTQ STPQGYGSTG GYGSSQSSQS SYGQQSSYPG ENSBTAP00000007571/1-512 GQSSYSGSYG QTQNS-YSTQ SAPQGYGSAG GYGSSQSSQS SYGQQSSYPG ENSP00000254108/1-526 GQSSY-SSYG QSQNTGYGTQ STPQGYGSTG GYGSSQSSQS SYGQQSSYPG bmy_00722T0/1-514 GQSSYGSSYG QTQNTGYGTQ STPQGYGSAG GYGSSQSSQS SYGQQSSYPG BACU011957/1-514 GQSSYGSSYG QTQNTGYGTQ STPQGYGSAG GYGSSQSSQS SYGQQSSYPG 101 150 ENSTTRP00000014745/1-506 YGQQPTPSSA SGSYGSSSQG SSYGQPQSGG YGQQSGYGGQ QQSYGQQQSY ENSBTAP00000007571/1-512 YGQQPAPSST SGSYGSSSQS SGYGQPQGGG YGQQSGYGGQ QQSYGQQQSY ENSP00000254108/1-526 YGQQPAPSST SGSYGSSSQS SSYGQPQSGS YSQQPSYGGQ QQSYGQQQSY bmy_00722T0/1-514 YGQQPAPSST SGSYGSSSQS SGYGQPQSGG YGQQSGYGGQ PPSYGQQQSY BACU011957/1-514 YGQQPAPSST SGSYGSSSQS SSYGQPQSGG YGQQSGYGGQ PQSYGQQQSY 151 200 ENSTTRP00000014745/1-506 NPPQGYGQQN QYNSS--SGG GGGGGGNYGQ DQPSMSSSG- -GGGYGNQDQ ENSBTAP00000007571/1-512 NPPQGYGQQS QYNSS--GGG GGGGGGSYGQ DQPSMSSGGG -GGGYGNQDQ ENSP00000254108/1-526 NPPQGYGQQN QYNSSSGGGG GGGGGGNYGQ DQSSMSSGGG SGGGYGNQDQ bmy_00722T0/1-514 NPPQGYGQQN QYNSS--GGG GGGGGGNYGQ DQSSMSGSG- -GGGYGNQDQ BACU011957/1-514 NPPQGYGQQN QYNSS--GGG GGGGGGNYGQ DQSSMSSSG- -GGGYGNQDQ 201 250 ENSTTRP00000014745/1-506 SGGG-YGG-G QQDRGGRGR- -------GGG GGYSRSSGGY EPRGRGGGRG ENSBTAP00000007571/1-512 SGG--YGG-G QQDRGGRGR- -------GGG GGYNRSSGGY EPRGRGGGRG ENSP00000254108/1-526 SGGGGSGGYG QQDRGGRGRG GSGGGGGGGG GGYNRSSGGY EPRGRGGGRG bmy_00722T0/1-514 SGGGSYGG-G QQDRGGRGR- -------GGG GGYSRSSGGY EPRGRGGGRG BACU011957/1-514 SGGGGYGG-G QQDRGGSGR- -------GGG GGYSRSSGGY EPRGRGGGRG 251 300 ENSTTRP00000014745/1-506 GRGGMGGSDR GGFNKFGXXX XXXXXXXX-X XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007571/1-512 GRGGMGGSDR GGFNKFGGPR DQGSRHDS-E QDNSDNNTIF VQGLGENVTI ENSP00000254108/1-526 GRGGMGGSDR GGFNKFGGPR DQGSRHDS-E QDNSDNNTIF VQGLGENVTI bmy_00722T0/1-514 GRGGMGGSDR GGFNKFGGPR DQGSRHDSAE QDNSDNNTIF VQGLGENVTI BACU011957/1-514 GRGGMGGSDR GGFNKFGGPR DQGSRHDS-E QDNSDNNTIF VQGLGENVTI 301 350 ENSTTRP00000014745/1-506 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007571/1-512 ESVADYFKQI GIIKTNKKTG QPMINLYTDR ETGKLKGEAT VSFDDPPSAK ENSP00000254108/1-526 ESVADYFKQI GIIKTNKKTG QPMINLYTDR ETGKLKGEAT VSFDDPPSAK bmy_00722T0/1-514 ESVADYFKQI GIIKTNKKTG QPMINLYTDR ETGKLKGEAT VSFDDPPSAK BACU011957/1-514 ESVADYFKQI GIIKTNKKTG QPMINLYTDR ETGKLKGEAT VSFDDPPSAK 351 400 ENSTTRP00000014745/1-506 XXXXXXXXKE -SGNPIKVSF ATRRADFNRG GGNGRGGRGR GGPMGRGGYG ENSBTAP00000007571/1-512 AAIDWFDGKE FSGNPIKVSF ATRRADFNRG GGNGRGGRGR GGPMGRGGYG ENSP00000254108/1-526 AAIDWFDGKE FSGNPIKVSF ATRRADFNRG GGNGRGGRGR GGPMGRGGYG bmy_00722T0/1-514 AAIDWFDGKE FSGNPIKVSF ATRRADFNRG GGNGRGGRGR GGPMGRGGYG BACU011957/1-514 AAIDWFDGKE FSGNPIKVSF ATRRADFNRG GGNGRGGRGR GGPMGRGGYG 401 450 ENSTTRP00000014745/1-506 GGGSGGGGRG GFPSGGGGGG GQQRAGDWKC PNPTCENMNF SWRNECNQCK ENSBTAP00000007571/1-512 GGGSGGGGRG GFPSGGGGGG GQQRAGDWKC PNPTCENMNF SWRNECNQCK ENSP00000254108/1-526 GGGSGGGGRG GFPSGGGGGG GQQRAGDWKC PNPTCENMNF SWRNECNQCK bmy_00722T0/1-514 GGGSGGGGRG GFPSGGGGGG GQQRAGDWKC PNPTCENMNF SWRNECNQCK BACU011957/1-514 GGGSGGGGRG GFPSGGGGGG GQQRAGDWKC PNPTCENMNF SWRNECNQCK 451 500 ENSTTRP00000014745/1-506 APKPDGPGGG PGGSHMGGNY GDDRRGGRGG YDRGGYRGRG GDRGGFRGGR ENSBTAP00000007571/1-512 APKPDGPGGG PGGSHMGGNY GDDRRGGRGG YDRGGYRGRG GDRGGFRGGR ENSP00000254108/1-526 APKPDGPGGG PGGSHMGGNY GDDRRGGRGG YDRGGYRGRG GDRGGFRGGR bmy_00722T0/1-514 APKPDGPGGG PGGSHMGGNY GDDRRGGRGG YDRGGYRGRG GDRGGFRGGR BACU011957/1-514 APKPDGPGGG PGGSHMGGNY GDDRRGGRGG YDRGGYRGRG GDRGGFRGGR 501 550 ENSTTRP00000014745/1-506 GGGDRGGFGP GKMDSRGEHR QDRRERP- ENSBTAP00000007571/1-512 GGGDRGGFGP GKMDSRGEHR QDRRERPY ENSP00000254108/1-526 GGGDRGGFGP GKMDSRGEHR QDRRERPY bmy_00722T0/1-514 GGGDRGGFGP GKMDSRGEHR QDRRERPY BACU011957/1-514 GGGDRGGFGP GKMDSRGEHR QDRRERPY