KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:23 2014 Check: 00 .. Name: ENSTTRP00000014694/1-1356 Len: 1409 Check: 3406 Weight: 1.00 Name: ENSP00000338766/1-1330 Len: 1409 Check: 1711 Weight: 1.00 Name: ENSBTAP00000007584/1-1331 Len: 1409 Check: 1535 Weight: 1.00 Name: bmy_15013T0/1-1337 Len: 1409 Check: 2645 Weight: 1.00 Name: BACU008808/1-1054 Len: 1409 Check: 6300 Weight: 1.00 // 1 50 ENSTTRP00000014694/1-1356 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRSSFRRGAG ENSP00000338766/1-1330 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRNSFRRGAG ENSBTAP00000007584/1-1331 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRSSFRRAAG bmy_15013T0/1-1337 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRSSFRRGAG BACU008808/1-1054 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014694/1-1356 -RGARAGPGS LPRQAKGGRQ LGASFKSTGS AVPXXXXXXX XXXXXXXXXX ENSP00000338766/1-1330 -AAAGAGPGS LPRGVGAGGL LGASFKSTGS SVPELEYAAA EYERLRKEYE ENSBTAP00000007584/1-1331 VAAAGAGPGS LPRGAGGGGL LGASFKSTGS SVPELEYAAA EYERLKKEYE bmy_15013T0/1-1337 -AAAGAGPGS LPRGAGGGGL LGASFKSTGS SVPELEYAAA EYERLKKEYE BACU008808/1-1054 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000014694/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-------- ----ALQKTY ENSP00000338766/1-1330 IFRVSKNQEL LSMGRREAKL DTENKRLRAE LQ-------- ----ALQKTY ENSBTAP00000007584/1-1331 IFRVSKNQEL LSMGRREAKL DTENKRLRAE LQ-------- ----ALQKTY bmy_15013T0/1-1337 IFRVSKNQEL LSMGRREAKL DTENKRLRAE LQNGNMPFLI TGEKALQKTY BACU008808/1-1054 -F-------- ---------- ---------- -Q-------- ----ALQKTY 151 200 ENSTTRP00000014694/1-1356 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL ENSP00000338766/1-1330 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL ENSBTAP00000007584/1-1331 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL bmy_15013T0/1-1337 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL BACU008808/1-1054 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL 201 250 ENSTTRP00000014694/1-1356 RAKRELESKL QRLQVQGIHV FDPGESDSDD NCTDVTAAGP QCEYWTGGAL ENSP00000338766/1-1330 RAKRELESKL QRLQAQGIQV FDPGESDSDD NCTDVTAAGT QCEYWTGGAL ENSBTAP00000007584/1-1331 RAKRELESKL QRLQAQGIHV FDPGESDSDD NCTDVTAAGT QCEYWTGGAL bmy_15013T0/1-1337 RAKRELESKL QRLHVQGIHV FDPGESDSDD NCTDVTAAGP QCEYWTGGAL BACU008808/1-1054 RAKRELESKL QRLHVQGIHV FDPGESDSDD NCTDVTAAGP QCEYWTGGAL 251 300 ENSTTRP00000014694/1-1356 GSEPSIGSMI QLQQSFRGPE FALSSIDIEG PFANVNRDDW DIAVASLLQV ENSP00000338766/1-1330 GSEPSIGSMI QLQQSFRGPE FAHSSIDVEG PFANVNRDDW DIAVASLLQV ENSBTAP00000007584/1-1331 GSEPSIGSMI QLQQSFRGPE FAHSSIDVEG PFANVNRDDW DIAVASLLQV bmy_15013T0/1-1337 GSEPSIGSMI QLQQSFRGPE FAHSSIDIEG PFANVNRDDW DIAVASLLQV BACU008808/1-1054 GSEPSIGSMI QLQQSFRGPE FAHSSIDIEG PFANVNR--- ---------- 301 350 ENSTTRP00000014694/1-1356 TPLFSHSLWS NTVRCYLIYT DETQPEMDLF LKXXXXXXXX XXXXXXXXXX ENSP00000338766/1-1330 TPLFSHSLWS NTVRCYLIYT DETQPEMDLF LKDYSPKLKR MCETMGYFFH ENSBTAP00000007584/1-1331 TPLFSHSLWS NTVRCYLIHT DETQPEMDLF LKDYSPKLKR MCETMGYFFH bmy_15013T0/1-1337 TPLFSHSLWS NTVRCYLIYT DETQPETDLF LKDYSPKLKR MCETMGYFFN BACU008808/1-1054 ---------- --VQC----- ---------- ---------- ---------- 351 400 ENSTTRP00000014694/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLLLE DCEEAFLKNP ENSP00000338766/1-1330 AVYFPIDVEN QYLTVRKWEI EKSSLVILFI HLTLPSLLLE DCEEAFLKNP ENSBTAP00000007584/1-1331 AVYFPIDIEN QYLAVRKWEI EKSSLVILFI HLTLPSLLLE DCEEAFLKNP bmy_15013T0/1-1337 TVYFPIDTEN QYLTVRKWEI EKSSLVILFI HLTLPSFGM- ---------- BACU008808/1-1054 ---------- ---STRNTDF Q--------- ----SSLLLE DCEEAFLKNP 401 450 ENSTTRP00000014694/1-1356 EGKPRLIYHR LEDGKVSSDS VQHLIDQVSN LNKTNKAKII DHSGDTAEGV ENSP00000338766/1-1330 EGKPRLIFHR LEDGKVSSDS VQQLIDQVSN LNKTSKAKII DHSGDPAEGV ENSBTAP00000007584/1-1331 EGKPRLIYHR LEDGKVSSDS VQQLIDQVSN LNKTSKAKII DHLGDPAEGV bmy_15013T0/1-1337 ---------- ---------- ---LIPK--- -------KII DHSGDPAEGV BACU008808/1-1054 EGKPRLLYHR LEDGKVSSDS VQHLIDQVSN LNKTNKAKII DHSGDPAEGV 451 500 ENSTTRP00000014694/1-1356 YK-YIYVEKI IKQDILGFET TDLETKDLGS EDSIPEEDDF GDVLWDIHDE ENSP00000338766/1-1330 YKTYICVEKI IKQDILGFEN TDLETKDLGS EDSIPEEDDF GDVLWDIHDE ENSBTAP00000007584/1-1331 YKTYIYVEKI IKQDILGFEN TDLDTKDLGS EDSIPEEDDF GDVLWDIHDE bmy_15013T0/1-1337 YKTYIYVEKI IKQDILGFEN TDLETKDLGS EDSIPEEDDF GDVLWDIHDE BACU008808/1-1054 YKTYIYVEKI IKQDILGFEN TDLETKDLGS EDSIPEEDDF GDVLWDIHDE 501 550 ENSTTRP00000014694/1-1356 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS ENSP00000338766/1-1330 QEQMETFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS ENSBTAP00000007584/1-1331 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS bmy_15013T0/1-1337 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS BACU008808/1-1054 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS 551 600 ENSTTRP00000014694/1-1356 LLLSKWIQLR QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW ENSP00000338766/1-1330 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW ENSBTAP00000007584/1-1331 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSEASLIIKR LTLKLMQHSW bmy_15013T0/1-1337 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW BACU008808/1-1054 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW 601 650 ENSTTRP00000014694/1-1356 SVSALTLDPA KLLEEFPHWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW ENSP00000338766/1-1330 SVSALTLDPA KLLEEFPRWL EKLSARHQGS IIIVIDSIDQ VQQVEKHMKW ENSBTAP00000007584/1-1331 SVSALTLDPA KLLEEFPRWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW bmy_15013T0/1-1337 SVSALTLDPA KLLEEFPHWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW BACU008808/1-1054 SVSALTLDPA KLLEEFPHWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW 651 700 ENSTTRP00000014694/1-1356 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS ENSP00000338766/1-1330 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLSPKDA KSIIIAECHS ENSBTAP00000007584/1-1331 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS bmy_15013T0/1-1337 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS BACU008808/1-1054 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS 701 750 ENSTTRP00000014694/1-1356 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIACAGR AGNLDKILLQ ENSP00000338766/1-1330 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIARAGR AGNLDKILHQ ENSBTAP00000007584/1-1331 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIARAGR AGNLDKILLQ bmy_15013T0/1-1337 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIACAGR AGNLDKTLLQ BACU008808/1-1054 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIACAGR AGNLDKILLQ 751 800 ENSTTRP00000014694/1-1356 CFQCQDTVQL YRLVLRSIQE SMTNDMDKEL MKQXXXXXXX XXXXXXXXXX ENSP00000338766/1-1330 CFQCQDTLSL YRLVLHSIRE SMANDVDKEL MKQILCLVNV SHNGVSESEL ENSBTAP00000007584/1-1331 CFQCQDTVSL YRLVLRSIQE SLANDTDKEL MKQILCLVNI SHNGVNESEL bmy_15013T0/1-1337 CLQCQDTVSL YRLVLRSIQE SMTNDTDKEL MKQILCLVNV SHNGVSESEL BACU008808/1-1054 CFQCQDTVSL YRLVLRSIQE SMTNDTDKEL MK-------- ---------- 801 850 ENSTTRP00000014694/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAW ETVRLEYMEG ENSP00000338766/1-1330 MELYPEMSWT FLTSLIHSLY KMCLLTYGCG LLRFQHLQAW ETVRLEYLEG ENSBTAP00000007584/1-1331 MELYPEMSWT VLTSLIHSLH KMCLLTYGCG LLKFQHLQAW ETVRLEYMES bmy_15013T0/1-1337 MELYPELSWA VLTSLIHSLH KMCLLTYGCG LLKFQHLQAW ETVRLEYVEG BACU008808/1-1054 ---------- ---------- ---------- -------QAW ETVRLEYMEG 851 900 ENSTTRP00000014694/1-1356 PTIISSYRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL ENSP00000338766/1-1330 PTVTSSYRQK LINYFTLQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL ENSBTAP00000007584/1-1331 PTIIASYRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL bmy_15013T0/1-1337 PTIISSYRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQA SKQKLHDCLL BACU008808/1-1054 PTIISSHRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL 901 950 ENSTTRP00000014694/1-1356 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCEGEE ENSP00000338766/1-1330 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MATEYFDSLK QYEKNCEGED ENSBTAP00000007584/1-1331 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCEGEE bmy_15013T0/1-1337 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCEGEE BACU008808/1-1054 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCDGEE 951 1000 ENSTTRP00000014694/1-1356 SMICLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPQVAQS ENSP00000338766/1-1330 NMSCLADLYE TLGRFLKDLG LLSQAIVPLQ RSLEIRETAL DPDHPRVAQS ENSBTAP00000007584/1-1331 SMVCLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPQVAQS bmy_15013T0/1-1337 SMICLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPRVAQS BACU008808/1-1054 SMICLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPRVAQS 1001 1050 ENSTTRP00000014694/1-1356 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHIA RELEALATLY ENSP00000338766/1-1330 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPYTA RELEALATLY ENSBTAP00000007584/1-1331 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHTA RELEALATLY bmy_15013T0/1-1337 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHIA RELEALATLY BACU008808/1-1054 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHIA RELEALATLY 1051 1100 ENSTTRP00000014694/1-1356 QKQNKYEQAE HFRKKSFKIR QKATRRKGNL YGFALLRRRA LQLEELTLGK ENSP00000338766/1-1330 QKQNKYEQAE HFRKKSFKIH QKAIKKKGNL YGFALLRRRA LQLEELTLGK ENSBTAP00000007584/1-1331 QKQDKYEQAE HFRKKSFKIR QKAARRKGNL YGFSLLRRRA LQLEELTLGK bmy_15013T0/1-1337 QKQNKYEQAE HFRKKSFKIR QKATRRKGNL YGFALLRRRA LQLEELTLGK BACU008808/1-1054 QKQNK----- ---------- ---------- --------RA LQLEELTLGK 1101 1150 ENSTTRP00000014694/1-1356 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS ENSP00000338766/1-1330 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS ENSBTAP00000007584/1-1331 DTPDNARTLN ELGVLYYLQN NLEIADQFLK RSLEMRERVL GPDHPDCAQS bmy_15013T0/1-1337 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS BACU008808/1-1054 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS 1151 1200 ENSTTRP00000014694/1-1356 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAVLY ENSP00000338766/1-1330 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAILY ENSBTAP00000007584/1-1331 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAILY bmy_15013T0/1-1337 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAVLY BACU008808/1-1054 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAVLY 1201 1250 ENSTTRP00000014694/1-1356 KKMXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXM----- ENSP00000338766/1-1330 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQM----- ENSBTAP00000007584/1-1331 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQM----- bmy_15013T0/1-1337 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQMENINF BACU008808/1-1054 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQM----- 1251 1300 ENSTTRP00000014694/1-1356 ---------- ---------- ---------- ----KKHIEA LPLYERALKI ENSP00000338766/1-1330 ---------- ---------- ---------- ----KKHVEA LPLYERALKI ENSBTAP00000007584/1-1331 ---------- ---------- ---------- ----KKHSEA LPLYERALKI bmy_15013T0/1-1337 LKVLTQVGQL SLEYLNSNFR NAVCSSEHCF FFNKKKHIEA LPLYERALKI BACU008808/1-1054 ---------- ---------- ---------- ----KKHIEA LPLYERALKI 1301 1350 ENSTTRP00000014694/1-1356 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYRRAM EIKEAETSLL ENSP00000338766/1-1330 YEDSLGRMHP RVGETLKNLA VLSYEGGDFE KAAELYKRAM EIKEAETSLL ENSBTAP00000007584/1-1331 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYKRAM EIKEAETSLL bmy_15013T0/1-1337 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYRRAM EIKEAETSLL BACU008808/1-1054 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYRRAM EIKEAETSLL 1351 1400 ENSTTRP00000014694/1-1356 GGKAPSRHSS SGDTVSLKTT HSPNVFLHQG QRTVQSNLLS PEGLSGICTQ ENSP00000338766/1-1330 GGKAPSRHSS SGDTFSLKTA HSPNVFLQQG QR-------- ---------- ENSBTAP00000007584/1-1331 GGKAPSQHSS SGDTFSLKTT HSPNLFLHQG QR-------- ---------- bmy_15013T0/1-1337 GGKAPSRHSS SGDTVSLKTT HSPNVFLHQG QR-------- ---------- BACU008808/1-1054 GGKAPSRHSS SGDTVSLKTT HSPNVFLHQG QSLIVPHLAF QQQSGPVLYL 1401 1450 ENSTTRP00000014694/1-1356 KKTTWFTSS ENSP00000338766/1-1330 --------- ENSBTAP00000007584/1-1331 --------- bmy_15013T0/1-1337 --------- BACU008808/1-1054 KEKFQGVKG