KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:32:23 2014 Check: 00 ..
Name: ENSTTRP00000014694/1-1356 Len: 1409 Check: 3406 Weight: 1.00
Name: ENSP00000338766/1-1330 Len: 1409 Check: 1711 Weight: 1.00
Name: ENSBTAP00000007584/1-1331 Len: 1409 Check: 1535 Weight: 1.00
Name: bmy_15013T0/1-1337 Len: 1409 Check: 2645 Weight: 1.00
Name: BACU008808/1-1054 Len: 1409 Check: 6300 Weight: 1.00
//
1 50
ENSTTRP00000014694/1-1356 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRSSFRRGAG
ENSP00000338766/1-1330 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRNSFRRGAG
ENSBTAP00000007584/1-1331 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRSSFRRAAG
bmy_15013T0/1-1337 MGTASSLVSP AGGEVIEDTY GAGGGEACEI PVEVKPKARL LRSSFRRGAG
BACU008808/1-1054 ---------- ---------- ---------- ---------- ----------
51 100
ENSTTRP00000014694/1-1356 -RGARAGPGS LPRQAKGGRQ LGASFKSTGS AVPXXXXXXX XXXXXXXXXX
ENSP00000338766/1-1330 -AAAGAGPGS LPRGVGAGGL LGASFKSTGS SVPELEYAAA EYERLRKEYE
ENSBTAP00000007584/1-1331 VAAAGAGPGS LPRGAGGGGL LGASFKSTGS SVPELEYAAA EYERLKKEYE
bmy_15013T0/1-1337 -AAAGAGPGS LPRGAGGGGL LGASFKSTGS SVPELEYAAA EYERLKKEYE
BACU008808/1-1054 ---------- ---------- ---------- ---------- ----------
101 150
ENSTTRP00000014694/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-------- ----ALQKTY
ENSP00000338766/1-1330 IFRVSKNQEL LSMGRREAKL DTENKRLRAE LQ-------- ----ALQKTY
ENSBTAP00000007584/1-1331 IFRVSKNQEL LSMGRREAKL DTENKRLRAE LQ-------- ----ALQKTY
bmy_15013T0/1-1337 IFRVSKNQEL LSMGRREAKL DTENKRLRAE LQNGNMPFLI TGEKALQKTY
BACU008808/1-1054 -F-------- ---------- ---------- -Q-------- ----ALQKTY
151 200
ENSTTRP00000014694/1-1356 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL
ENSP00000338766/1-1330 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL
ENSBTAP00000007584/1-1331 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL
bmy_15013T0/1-1337 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL
BACU008808/1-1054 QKILREKESA LEAKYQAMER AATFEHDRDK VKRQFKIFRE TKENEIQDLL
201 250
ENSTTRP00000014694/1-1356 RAKRELESKL QRLQVQGIHV FDPGESDSDD NCTDVTAAGP QCEYWTGGAL
ENSP00000338766/1-1330 RAKRELESKL QRLQAQGIQV FDPGESDSDD NCTDVTAAGT QCEYWTGGAL
ENSBTAP00000007584/1-1331 RAKRELESKL QRLQAQGIHV FDPGESDSDD NCTDVTAAGT QCEYWTGGAL
bmy_15013T0/1-1337 RAKRELESKL QRLHVQGIHV FDPGESDSDD NCTDVTAAGP QCEYWTGGAL
BACU008808/1-1054 RAKRELESKL QRLHVQGIHV FDPGESDSDD NCTDVTAAGP QCEYWTGGAL
251 300
ENSTTRP00000014694/1-1356 GSEPSIGSMI QLQQSFRGPE FALSSIDIEG PFANVNRDDW DIAVASLLQV
ENSP00000338766/1-1330 GSEPSIGSMI QLQQSFRGPE FAHSSIDVEG PFANVNRDDW DIAVASLLQV
ENSBTAP00000007584/1-1331 GSEPSIGSMI QLQQSFRGPE FAHSSIDVEG PFANVNRDDW DIAVASLLQV
bmy_15013T0/1-1337 GSEPSIGSMI QLQQSFRGPE FAHSSIDIEG PFANVNRDDW DIAVASLLQV
BACU008808/1-1054 GSEPSIGSMI QLQQSFRGPE FAHSSIDIEG PFANVNR--- ----------
301 350
ENSTTRP00000014694/1-1356 TPLFSHSLWS NTVRCYLIYT DETQPEMDLF LKXXXXXXXX XXXXXXXXXX
ENSP00000338766/1-1330 TPLFSHSLWS NTVRCYLIYT DETQPEMDLF LKDYSPKLKR MCETMGYFFH
ENSBTAP00000007584/1-1331 TPLFSHSLWS NTVRCYLIHT DETQPEMDLF LKDYSPKLKR MCETMGYFFH
bmy_15013T0/1-1337 TPLFSHSLWS NTVRCYLIYT DETQPETDLF LKDYSPKLKR MCETMGYFFN
BACU008808/1-1054 ---------- --VQC----- ---------- ---------- ----------
351 400
ENSTTRP00000014694/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLLLE DCEEAFLKNP
ENSP00000338766/1-1330 AVYFPIDVEN QYLTVRKWEI EKSSLVILFI HLTLPSLLLE DCEEAFLKNP
ENSBTAP00000007584/1-1331 AVYFPIDIEN QYLAVRKWEI EKSSLVILFI HLTLPSLLLE DCEEAFLKNP
bmy_15013T0/1-1337 TVYFPIDTEN QYLTVRKWEI EKSSLVILFI HLTLPSFGM- ----------
BACU008808/1-1054 ---------- ---STRNTDF Q--------- ----SSLLLE DCEEAFLKNP
401 450
ENSTTRP00000014694/1-1356 EGKPRLIYHR LEDGKVSSDS VQHLIDQVSN LNKTNKAKII DHSGDTAEGV
ENSP00000338766/1-1330 EGKPRLIFHR LEDGKVSSDS VQQLIDQVSN LNKTSKAKII DHSGDPAEGV
ENSBTAP00000007584/1-1331 EGKPRLIYHR LEDGKVSSDS VQQLIDQVSN LNKTSKAKII DHLGDPAEGV
bmy_15013T0/1-1337 ---------- ---------- ---LIPK--- -------KII DHSGDPAEGV
BACU008808/1-1054 EGKPRLLYHR LEDGKVSSDS VQHLIDQVSN LNKTNKAKII DHSGDPAEGV
451 500
ENSTTRP00000014694/1-1356 YK-YIYVEKI IKQDILGFET TDLETKDLGS EDSIPEEDDF GDVLWDIHDE
ENSP00000338766/1-1330 YKTYICVEKI IKQDILGFEN TDLETKDLGS EDSIPEEDDF GDVLWDIHDE
ENSBTAP00000007584/1-1331 YKTYIYVEKI IKQDILGFEN TDLDTKDLGS EDSIPEEDDF GDVLWDIHDE
bmy_15013T0/1-1337 YKTYIYVEKI IKQDILGFEN TDLETKDLGS EDSIPEEDDF GDVLWDIHDE
BACU008808/1-1054 YKTYIYVEKI IKQDILGFEN TDLETKDLGS EDSIPEEDDF GDVLWDIHDE
501 550
ENSTTRP00000014694/1-1356 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS
ENSP00000338766/1-1330 QEQMETFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS
ENSBTAP00000007584/1-1331 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS
bmy_15013T0/1-1337 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS
BACU008808/1-1054 QEQMEAFQQA SNSAHELGFE KYYQRLNDLV AAPAPIPPLL VSGGPGSGKS
551 600
ENSTTRP00000014694/1-1356 LLLSKWIQLR QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW
ENSP00000338766/1-1330 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW
ENSBTAP00000007584/1-1331 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSEASLIIKR LTLKLMQHSW
bmy_15013T0/1-1337 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW
BACU008808/1-1054 LLLSKWIQLQ QKNSPNTLIL SHFVGRPMST SSESSLIIKR LTLKLMQHSW
601 650
ENSTTRP00000014694/1-1356 SVSALTLDPA KLLEEFPHWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW
ENSP00000338766/1-1330 SVSALTLDPA KLLEEFPRWL EKLSARHQGS IIIVIDSIDQ VQQVEKHMKW
ENSBTAP00000007584/1-1331 SVSALTLDPA KLLEEFPRWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW
bmy_15013T0/1-1337 SVSALTLDPA KLLEEFPHWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW
BACU008808/1-1054 SVSALTLDPA KLLEEFPHWL EKLSARHQGS IIIIIDSIDQ IQQVEKHMKW
651 700
ENSTTRP00000014694/1-1356 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS
ENSP00000338766/1-1330 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLSPKDA KSIIIAECHS
ENSBTAP00000007584/1-1331 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS
bmy_15013T0/1-1337 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS
BACU008808/1-1054 LIDPLPVNVR VIVSVNVETC PPAWRLWPTL HLDPLNPKDA KSIIIAECHS
701 750
ENSTTRP00000014694/1-1356 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIACAGR AGNLDKILLQ
ENSP00000338766/1-1330 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIARAGR AGNLDKILHQ
ENSBTAP00000007584/1-1331 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIARAGR AGNLDKILLQ
bmy_15013T0/1-1337 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIACAGR AGNLDKTLLQ
BACU008808/1-1054 VDIKLSKEQE KKLERHCRSA TTCNALYVTL FGKMIACAGR AGNLDKILLQ
751 800
ENSTTRP00000014694/1-1356 CFQCQDTVQL YRLVLRSIQE SMTNDMDKEL MKQXXXXXXX XXXXXXXXXX
ENSP00000338766/1-1330 CFQCQDTLSL YRLVLHSIRE SMANDVDKEL MKQILCLVNV SHNGVSESEL
ENSBTAP00000007584/1-1331 CFQCQDTVSL YRLVLRSIQE SLANDTDKEL MKQILCLVNI SHNGVNESEL
bmy_15013T0/1-1337 CLQCQDTVSL YRLVLRSIQE SMTNDTDKEL MKQILCLVNV SHNGVSESEL
BACU008808/1-1054 CFQCQDTVSL YRLVLRSIQE SMTNDTDKEL MK-------- ----------
801 850
ENSTTRP00000014694/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAW ETVRLEYMEG
ENSP00000338766/1-1330 MELYPEMSWT FLTSLIHSLY KMCLLTYGCG LLRFQHLQAW ETVRLEYLEG
ENSBTAP00000007584/1-1331 MELYPEMSWT VLTSLIHSLH KMCLLTYGCG LLKFQHLQAW ETVRLEYMES
bmy_15013T0/1-1337 MELYPELSWA VLTSLIHSLH KMCLLTYGCG LLKFQHLQAW ETVRLEYVEG
BACU008808/1-1054 ---------- ---------- ---------- -------QAW ETVRLEYMEG
851 900
ENSTTRP00000014694/1-1356 PTIISSYRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL
ENSP00000338766/1-1330 PTVTSSYRQK LINYFTLQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL
ENSBTAP00000007584/1-1331 PTIIASYRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL
bmy_15013T0/1-1337 PTIISSYRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQA SKQKLHDCLL
BACU008808/1-1054 PTIISSHRQK LTNYFTMQLS QDRVTWRSAD ELPWLFQQQG SKQKLHDCLL
901 950
ENSTTRP00000014694/1-1356 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCEGEE
ENSP00000338766/1-1330 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MATEYFDSLK QYEKNCEGED
ENSBTAP00000007584/1-1331 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCEGEE
bmy_15013T0/1-1337 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCEGEE
BACU008808/1-1054 NLFVSQNLYK RGHFAELLSY WQFVGKDKSA MAAEYFDSLK QYEKNCDGEE
951 1000
ENSTTRP00000014694/1-1356 SMICLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPQVAQS
ENSP00000338766/1-1330 NMSCLADLYE TLGRFLKDLG LLSQAIVPLQ RSLEIRETAL DPDHPRVAQS
ENSBTAP00000007584/1-1331 SMVCLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPQVAQS
bmy_15013T0/1-1337 SMICLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPRVAQS
BACU008808/1-1054 SMICLADLYE TLGRFLKDLG LLSQAVVPLQ RSLEIRETAL DPDHPRVAQS
1001 1050
ENSTTRP00000014694/1-1356 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHIA RELEALATLY
ENSP00000338766/1-1330 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPYTA RELEALATLY
ENSBTAP00000007584/1-1331 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHTA RELEALATLY
bmy_15013T0/1-1337 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHIA RELEALATLY
BACU008808/1-1054 LHQLASVYVQ WKKFGNAEQL YKQALEISEN AYGADHPHIA RELEALATLY
1051 1100
ENSTTRP00000014694/1-1356 QKQNKYEQAE HFRKKSFKIR QKATRRKGNL YGFALLRRRA LQLEELTLGK
ENSP00000338766/1-1330 QKQNKYEQAE HFRKKSFKIH QKAIKKKGNL YGFALLRRRA LQLEELTLGK
ENSBTAP00000007584/1-1331 QKQDKYEQAE HFRKKSFKIR QKAARRKGNL YGFSLLRRRA LQLEELTLGK
bmy_15013T0/1-1337 QKQNKYEQAE HFRKKSFKIR QKATRRKGNL YGFALLRRRA LQLEELTLGK
BACU008808/1-1054 QKQNK----- ---------- ---------- --------RA LQLEELTLGK
1101 1150
ENSTTRP00000014694/1-1356 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS
ENSP00000338766/1-1330 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS
ENSBTAP00000007584/1-1331 DTPDNARTLN ELGVLYYLQN NLEIADQFLK RSLEMRERVL GPDHPDCAQS
bmy_15013T0/1-1337 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS
BACU008808/1-1054 DTPDNARTLN ELGVLYYLQN NLETADQFLK RSLEMRERVL GPDHPDCAQS
1151 1200
ENSTTRP00000014694/1-1356 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAVLY
ENSP00000338766/1-1330 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAILY
ENSBTAP00000007584/1-1331 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAILY
bmy_15013T0/1-1337 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAVLY
BACU008808/1-1054 LNNLAALCNE KKQYDKAEEL YERALDIRRR ALAPDHPSLA YTVKHLAVLY
1201 1250
ENSTTRP00000014694/1-1356 KKMXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXM-----
ENSP00000338766/1-1330 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQM-----
ENSBTAP00000007584/1-1331 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQM-----
bmy_15013T0/1-1337 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQMENINF
BACU008808/1-1054 KKMGKLDKAV PLYELAVEIR QKSFGPKHPS VATALVNLAV LYSQM-----
1251 1300
ENSTTRP00000014694/1-1356 ---------- ---------- ---------- ----KKHIEA LPLYERALKI
ENSP00000338766/1-1330 ---------- ---------- ---------- ----KKHVEA LPLYERALKI
ENSBTAP00000007584/1-1331 ---------- ---------- ---------- ----KKHSEA LPLYERALKI
bmy_15013T0/1-1337 LKVLTQVGQL SLEYLNSNFR NAVCSSEHCF FFNKKKHIEA LPLYERALKI
BACU008808/1-1054 ---------- ---------- ---------- ----KKHIEA LPLYERALKI
1301 1350
ENSTTRP00000014694/1-1356 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYRRAM EIKEAETSLL
ENSP00000338766/1-1330 YEDSLGRMHP RVGETLKNLA VLSYEGGDFE KAAELYKRAM EIKEAETSLL
ENSBTAP00000007584/1-1331 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYKRAM EIKEAETSLL
bmy_15013T0/1-1337 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYRRAM EIKEAETSLL
BACU008808/1-1054 YEDSLGRMHP RVGETLKNLA VLSYEEGDFE KAAELYRRAM EIKEAETSLL
1351 1400
ENSTTRP00000014694/1-1356 GGKAPSRHSS SGDTVSLKTT HSPNVFLHQG QRTVQSNLLS PEGLSGICTQ
ENSP00000338766/1-1330 GGKAPSRHSS SGDTFSLKTA HSPNVFLQQG QR-------- ----------
ENSBTAP00000007584/1-1331 GGKAPSQHSS SGDTFSLKTT HSPNLFLHQG QR-------- ----------
bmy_15013T0/1-1337 GGKAPSRHSS SGDTVSLKTT HSPNVFLHQG QR-------- ----------
BACU008808/1-1054 GGKAPSRHSS SGDTVSLKTT HSPNVFLHQG QSLIVPHLAF QQQSGPVLYL
1401 1450
ENSTTRP00000014694/1-1356 KKTTWFTSS
ENSP00000338766/1-1330 ---------
ENSBTAP00000007584/1-1331 ---------
bmy_15013T0/1-1337 ---------
BACU008808/1-1054 KEKFQGVKG