KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:24 2014 Check: 00 .. Name: bmy_17428T0/1-491 Len: 627 Check: 6375 Weight: 1.00 Name: ENSTTRP00000007234/1-612 Len: 627 Check: 2828 Weight: 1.00 Name: ENSBTAP00000007589/1-627 Len: 627 Check: 9930 Weight: 1.00 Name: ENSP00000371393/1-612 Len: 627 Check: 2795 Weight: 1.00 Name: BACU019338/1-592 Len: 627 Check: 5415 Weight: 1.00 // 1 50 bmy_17428T0/1-491 ---------- -MAAGTGAPG GGGPGMDARL DQETARWLRW DK-------- ENSTTRP00000007234/1-612 ---------- -----TGAPG RGGPGMDARL DQETARWLRW DKNPLTLESV ENSBTAP00000007589/1-627 VAARLEVAAL AAAAATRAPG GGDAGMDSRL DQETAQWLRW DKNPLTLASV ENSP00000371393/1-612 ---------- -----MAAPE GSGLGEDARL DQETAQWLRW DKNSLTLEAV BACU019338/1-592 ---------- ---------- ---------- -----MYISF LQNPLTLESV 51 100 bmy_17428T0/1-491 ---------- ---------- ---------- ---------- --------GF ENSTTRP00000007234/1-612 KQLIAEGNKE ELQKCFGARM EFGTAGLRAA MGAGISCMND LTIIQTTQGF ENSBTAP00000007589/1-627 KQLIAAGNTE ELQKCFSARM EFGTAGLRAA MGAGISHMND LTIIQTTQGF ENSP00000371393/1-612 KRLIAEGNKE ELRKCFGARM EFGTAGLRAA MGPGISRMND LTIIQTTQGF BACU019338/1-592 KQLIAEGNKE ELQKCFGARM EFGTAGLRGA MGAGISRMND LTIIQTTQGF 101 150 bmy_17428T0/1-491 CRYLEKQFSD LKQRGVVISY DARAHPASGS SSRRFARLAA TTFISQGIPV ENSTTRP00000007234/1-612 CRYLEKQFSD LKQRGVVISY DARAHPASGG SSRRFARLAA TTFISQGIPV ENSBTAP00000007589/1-627 CRYLEKQFSD LKQRGVVISF DARAHPASGG SSRRFARLAA TTFISQGIPV ENSP00000371393/1-612 CRYLEKQFSD LKQKGIVISF DARAHPSSGG SSRRFARLAA TTFISQGIPV BACU019338/1-592 CRYLEKQFSD LKQRGVVISY DARAHPASGG SSRRFARLAA TTFISQGIPV 151 200 bmy_17428T0/1-491 YLFSDITPTP FVPYTVSHLK LCAGIMITAS HNPKQDNGYK VYWDNGAQII ENSTTRP00000007234/1-612 YFFSDITPTP FVPYTVSHLK LCAGIMITAS HNPKQDNGYK VYWDNGAQII ENSBTAP00000007589/1-627 YLFSDITPTP FVPYTVSHLK LCAGIMITAS HNPKQDNGYK VYWDNGAQII ENSP00000371393/1-612 YLFSDITPTP FVPFTVSHLK LCAGIMITAS HNPKQDNGYK VYWDNGAQII BACU019338/1-592 YLFSDITPTP FVPYTVSHLK LCAGIMITAS HNPKQDNGYK VYWDNGAQII 201 250 bmy_17428T0/1-491 SPHDKGISQA VEENLEPWPQ AWDDSVINGS PLFHDPSASI NKDYFEDLKK ENSTTRP00000007234/1-612 SPHDKGISQA IEENLEPWPQ AWDDSVINGS PLFHDPSASI NKDYFEDLKK ENSBTAP00000007589/1-627 SPHDKGISQA IEENLEPWPQ AWDDSVLNGS LLLHDPSASI NKDYFEDLKK ENSP00000371393/1-612 SPHDKGISQA IEENLEPWPQ AWDDSLIDSS PLLHNPSASI NNDYFEDLKK BACU019338/1-592 SPHDKGISQA VEENLEPWPQ AWDDSVINGS PLFHDPSASI NKDYFEDLKK 251 300 bmy_17428T0/1-491 YCFHRAVNRE TKVKFVHTSV HGVGHSFVQS AFKAFDFVPP EAVPEQKDPD ENSTTRP00000007234/1-612 YCFHRAVNRE TKVKFVHTSV HGVGHSFVQS AFKAFDFVPP EAVPEQKDPD ENSBTAP00000007589/1-627 YCFHRAVNKE TKVKFVHTSV HGVGHSFVQS AFKAFDFVPP EAVSEQKDPD ENSP00000371393/1-612 YCFHRSVNRE TKVKFVHTSV HGVGHSFVQS AFKAFDLVPP EAVPEQKDPD BACU019338/1-592 YCFHRAVNRE TKVKFVHTSV HGVGHSFVQS AFKAFDFVPP EAVPEQKDPD 301 350 bmy_17428T0/1-491 PEFPTVKYPN PEE------- ---------- ----ANDPDA DRLAVAEKQD ENSTTRP00000007234/1-612 PEFPTVRYPN PEEGKGVLTL SFALADKTTA KIVLANDPDA DRLAVAEKQD ENSBTAP00000007589/1-627 PEFPTVKYPN PEEGKGVLTL SFALADKIKA KIILANDPDA DRLAVAEKQD ENSP00000371393/1-612 PEFPTVKYPN PEEGKGVLTL SFALADKTKA RIVLANDPDA DRLAVAEKQD BACU019338/1-592 PEFPTVKYPN PEEGKGVLTL SFALADKTTA KIVLANDPDA DRLAVAEKQD 351 400 bmy_17428T0/1-491 SGEWRVLSGN ELGALLGWWL FTSWKEKNQD HSALKDTYML SSTVSSKILQ ENSTTRP00000007234/1-612 SGEWKVFSGN ELGALLGWWL FTSWKEKNQD HSALKDTYML SSTVSSKILQ ENSBTAP00000007589/1-627 SGKWKVFSGN ELGALLGWWL FTSWKEKNQD HSALQNLYML SSTVSSKILR ENSP00000371393/1-612 SGEWRVFSGN ELGALLGWWL FTSWKEKNQD RSALKDTYML SSTVSSKILR BACU019338/1-592 SGEWRVFSGN ELGALLGWWL FTSWKEKNQD HSALKDTYML SSTVSSKILQ 401 450 bmy_17428T0/1-491 AIALKEGFHF EETLTGFKWM GNRAKQLIDQ GKNVLFAFEE AIG------- ENSTTRP00000007234/1-612 AIALKEGFHF EETLTGFKWM GNRAKQLIDQ GKNVLFAFEE AIXXXXXXXX ENSBTAP00000007589/1-627 AIALKEGFHF EETLTGFKWM GNRAKQLIDQ GKNVLFAFEE AIGYMCCPFV ENSP00000371393/1-612 AIALKEGFHF EETLTGFKWM GNRAKQLIDQ GKTVLFAFEE AIGYMCCPFV BACU019338/1-592 AIALKEGFHF EETLTGFKWM GNRAKQLIDQ GKNVLFAFEE AIGYMCCPFV 451 500 bmy_17428T0/1-491 -------MAT ISPKLRILSA TIKALLKNYL KTLEATMGRI I--------- ENSTTRP00000007234/1-612 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXYGYH ITKASYFICH ENSBTAP00000007589/1-627 LDKDGVSAAV ITAELASFLA TKNLSLSQQL KAIYVEYGYH ITRASYFICH ENSP00000371393/1-612 LDKDGVSAAV ISAELASFLA TKNLSLSQQL KAIYVEYGYH ITKASYFICH BACU019338/1-592 LDKDGVSAAV ISAELASFLA TKNLSLSQQL KAIYVEYGYH ITKASYFICH 501 550 bmy_17428T0/1-491 ----IQKLAA DLKFLAL--- -----GTLQL AMMI------ --ANPIKKL- ENSTTRP00000007234/1-612 DQGTIKKLFE NLRNYDGKNN YPKTCGKFEI SGIRDLTTGY DDSQPDKKAV ENSBTAP00000007589/1-627 DQETIKQLFE NLRNYDGKSN YPKTCGRFEI SHIRDLTTGY DDNEPDKKAI ENSP00000371393/1-612 DQETIKKLFE NLRNYDGKNN YPKACGKFEI SAIRDLTTGY DDSQPDKKAV BACU019338/1-592 DQGTIKKLFE NLRNYDGKNN YPKTCGRFEI SGIRDLTTGY DDSQPDKKAV 551 600 bmy_17428T0/1-491 ----KSSQMI TFTFANGGVA TIRTSGTEPK IKYYSELRAP PGNSDPEQLK ENSTTRP00000007234/1-612 LPTSKSSQMI TFTFANGGVA TIRTSGTEPK IKYYSELCAP PGNSDPDQLK ENSBTAP00000007589/1-627 LPTSKSSQMI TFSFANGGVA TMRTSGTEPK IKYYLELCAP PGNSDPEQLK ENSP00000371393/1-612 LPTSKSSQMI TFTFANGGVA TMRTSGTEPK IKYYAELCAP PGNSDPEQLK BACU019338/1-592 LPTSKSSQMI TFTFANGGVA TIRTSGTEPK IKYYSELRAP PGNSDPEQLK 601 650 bmy_17428T0/1-491 KELNELVSAI EEHFFQPQKY NLQPKGE ENSTTRP00000007234/1-612 KELNELVSAI EEYFFQPQKY NLQPKGE ENSBTAP00000007589/1-627 KELDELVSAV EEHFFQPQKY NLQPKGE ENSP00000371393/1-612 KELNELVSAI EEHFFQPQKY NLQPKAD BACU019338/1-592 KEKNELVSAI EEHFFQPQKY NLQPKGE