KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:30 2014 Check: 00 .. Name: ENSP00000284690/1-743 Len: 770 Check: 2043 Weight: 1.00 Name: ENSBTAP00000007619/1-744 Len: 770 Check: 4208 Weight: 1.00 Name: ENSTTRP00000002975/1-742 Len: 770 Check: 4580 Weight: 1.00 Name: bmy_21525T0/1-438 Len: 770 Check: 9048 Weight: 1.00 Name: BACU004749/1-712 Len: 770 Check: 9393 Weight: 1.00 // 1 50 ENSP00000284690/1-743 MEEEGLECPN SSSEKRYFPE SLDSSDGDEE EVLACEDLEL NPFDGLPYSS ENSBTAP00000007619/1-744 MEAAALECPN SSSEKRYFPE SLDSSDGDEE GILACEDLEL NPFDGLPYSS ENSTTRP00000002975/1-742 MEEEELECPN SSSEKRYFPE SLDSSEGNEE GILACEDLEL NPFDGLPYSS bmy_21525T0/1-438 ---------- ---------- -----EGDEE GILACEDLEL NPFDGLPYSS BACU004749/1-712 -MEEELECPN SSSEKRYFPE SLDSSEGDEE GVLACEDLEL NPFDGLPYSS 51 100 ENSP00000284690/1-743 RYYKLLKERE DLPIWKEKYS FMENLLQNQI VIVSGDAKCG KSAQVPQWCA ENSBTAP00000007619/1-744 RYYKLLKERE DLPIWKEKYS FMEKLLQSQI VIVSGDAKCG KSSQVPQWCA ENSTTRP00000002975/1-742 RYYKLLKERE DLPIWKEKYS FMENLLQSQ- VIVSGDAKCG KSSQVPQWCA bmy_21525T0/1-438 RYYKLLKERE DLPIWKEKYS FMENLLQSQI VIVSGDAKCG KSSQVPQWCA BACU004749/1-712 RYYKLLKERE DLPIWKEKYS FMENLLQSQI VIVSGDAKCG KSSQVPQWCA 101 150 ENSP00000284690/1-743 EYCLSIHYQH GGVICTQVHK QTVVQLALRV ADEMDVNIGH EVGYVIPFEN ENSBTAP00000007619/1-744 EYCLSIDYRH GGVVCTQVHK PTAVQLALRV ADEMDVNIGH EVGYVIPFEN ENSTTRP00000002975/1-742 EYCLSIHYQH GGVVCTQVHK QTVVQLALRV ADEMDVNIGH EVGYMIPFEN bmy_21525T0/1-438 EYCLSIHYQH GGVVCTQVHK QTAVQLALRV ADEMDVNIGH EVGYVIPFEN BACU004749/1-712 EYCLSIHYQH GGVVCTQVHK QTAVQLALRV ADEMDVNIGH EVGYVIPFEN 151 200 ENSP00000284690/1-743 CCTNETILRY CTDDMLQREM MSNPFLGSYG VIILDDIHER SIATDVLLGL ENSBTAP00000007619/1-744 CCTSETILRY CTDDMLQREM MSNPFLGSYG VIILDDIHER SMATDVLLGL ENSTTRP00000002975/1-742 CCTSETILRY CTDDMLQREM MSSPFLGSYG VIILDDIHER SIATDVLLGL bmy_21525T0/1-438 CCTSETILRY CTDDMLQREM MSSPFLGSYG VIILDDIHER SIATDVLLGL BACU004749/1-712 CCTSETILRY CTDDMLQREM MSSPFLGSYG VIILDDIHER SIATDVLLGL 201 250 ENSP00000284690/1-743 LKDVLLARPE LKLIINSSPH LISKLNSYYG NVPVIEVKNK HPVEVVYLSE ENSBTAP00000007619/1-744 LKDVLLARPE LKLIINSSPH LINKLSSYYG NVPLIQVKNK HPVEAVYLSG ENSTTRP00000002975/1-742 LKDVLLARPE LKLIINSSPH LISKLSSYYG NVPLIEVKNK YPVEVVYLSG bmy_21525T0/1-438 LKDVLLARPE LKLIINSSPH LISKLSSYYG NVPLIEVKNK HPVEVVYLSG BACU004749/1-712 LKDVLLARPE LKLIINSSPH LISKLSSYYG NVPLIEVKNK HPVEVVYLSG 251 300 ENSP00000284690/1-743 AQKDSFESIL RLIFEIHHSG EKGDIVVFLA CEQDIEKVCE TVYQ-GSNLN ENSBTAP00000007619/1-744 AQKESFESIL RLIFEIHHSG EKGDIVVFLA CEQDIEKAYE IVCQEGSNLN ENSTTRP00000002975/1-742 AQKESFESIL RLIFEIHHSG EKGDIVVFLA CEQDIEKAYE IICR-RSNI- bmy_21525T0/1-438 AQKESFESIL RLIFEIHHSG EKGDIVVFLA CEQDIEKAYE IICQEGSNLN BACU004749/1-712 AQKESFESIL RLIFEIHHSG EKGDIVVFLA CEQDIEKAYE IICQEGSNLN 301 350 ENSP00000284690/1-743 PDLGELVVVP LYPKEKCSLF KPLDETEKRC QVY-QRRVVL TTSSGEFLIW ENSBTAP00000007619/1-744 PDLGELVVVP LYPKEKCALF KPNDETEKRC PVY-QRRVVL TASSGESLIC ENSTTRP00000002975/1-742 PDPGELVLI- LYPKXXXXXX XXXXXXXXXX XXXSQRRVVL TASSGESLIW bmy_21525T0/1-438 PDLGELVVVP LYPKEKCALF KPNDEIEKRC QVY-QRRVVL TASSGESLIW BACU004749/1-712 PDLGELIVVP LYPKEKCALF KPNDETEKRC QVY-QRRVVL TASSGESLIC 351 400 ENSP00000284690/1-743 SNSVRFVIDV GVERRKVYNP RIRANSLVMQ PISQSQAEIR KQILGSSSSG ENSBTAP00000007619/1-744 SNTVKFVIDV GVERRKVYNP RIRADSLVTQ PISQSQAETR KQILSASPSG ENSTTRP00000002975/1-742 SNTVKFVIDV GVERRKVYNP RIRANSLVTQ PISRSQAEIR KQILGSSSPG bmy_21525T0/1-438 SNTVKFVIDV GVERRKVYNP RIRANSLVMQ PISQSQAEIR KQILGSSSSG BACU004749/1-712 SNTVKFVIDV GVERRKVYNP RIRANSLVMQ PISQSQAEIR KQILGSSSSG 401 450 ENSP00000284690/1-743 ---------- KFFCLYTEEF ASKDMTPLKP AEMQEANLTS MVLFMKRIDI ENSBTAP00000007619/1-744 ---------- KLFCLYSEEF ASRDMQPLKP AEMQEANLTS MVLFMKRVDI ENSTTRP00000002975/1-742 ---------- KLFCLYSEEF ASEDMRPLKP AEMQEANLTS MVLFMKRIDI bmy_21525T0/1-438 ---------- KLFCLYSEEF ASEDMRPLKP AEMQEANLTS MVLFMKRIDI BACU004749/1-712 STADPKTNSR KLFCLYSEEF ASEDMRPLKP AEMQEANLTS MVLFMKRIDI 451 500 ENSP00000284690/1-743 AGLGHCDFMN RPAPESLMQA LEDLDYLAAL DNDGNLSEFG IIMSEFPLDP ENSBTAP00000007619/1-744 AGLGHCDFMN RPAPESLMQA LEDLDYLAAL DNDGNLSEFG IIMSEFPLDP ENSTTRP00000002975/1-742 AGLGHCDFMN RPAPESLMQA LEDLDYLAAL DNDGNLSEFG IIMSEFPLDP bmy_21525T0/1-438 AGLGHCDFVN RPG------- ---------- ---------- ---------- BACU004749/1-712 AGLGHCDFVN RPAPESLMQA LEDLDYLAAL DNDGNLSEFG IIMSEFPLDP 501 550 ENSP00000284690/1-743 QLSKSILASC EFDCVDEVLT IAAMVT---- ---------- APNCFSHVPH ENSBTAP00000007619/1-744 QLSKSILASC EFDCVDEMLT IAAMVT---- ---------- APNCFSHLPR ENSTTRP00000002975/1-742 QLAKSILASC EFDCVDEMLT VAAMVT---- ---------- APNCFSHLPR bmy_21525T0/1-438 ---------- ---------- ---------- ---------- -----SRVPA BACU004749/1-712 QLSKSILASC EFDCVDEMLT IAAMVTGIPS TALLYCVSVA APNCFSHLPR 551 600 ENSP00000284690/1-743 GAEEAALTCW KTFLHPEGDH FTLISIYKAY QDTTLNSSSE YCVEKWCRDY ENSBTAP00000007619/1-744 GAEEAALSCW KTFLHPDGDH FTLINIYKAY QDMTLNAASE HCVEKWCHDY ENSTTRP00000002975/1-742 GAEEAALSCW KTFLHPEGDH FTLINIYKAY QDMALNSTSE YCVEKWCHDY bmy_21525T0/1-438 GQQAPG---- ---------- ---------- ---------- ---------- BACU004749/1-712 GAEEAALSCW KKFLHPEGDH FTLINIYKAY QDMALNSTGE HCVEKWCHDY 601 650 ENSP00000284690/1-743 FLNCSALRMA DVIRAELLEI IKRIELPYAE PAFGSKENTL NIKKALLSGY ENSBTAP00000007619/1-744 FLNCSALRTA EVIRAELLEI IKRIELPYTE PAFGSKENTL NIKKALLSGY ENSTTRP00000002975/1-742 FLNCSALGMA DVIRAELLEI IKRIELPYTE PAFGSKENTL NIRKALLSGY bmy_21525T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU004749/1-712 FLNCSALRMA DVIRAELLEI IKRIELPYTE PAFGSKENTL NIRKALLSGY 651 700 ENSP00000284690/1-743 FMQIARDVDG SGNYLMLTHK QVAQLHPLSG YSITKKMPEW VLFHKFSISE ENSBTAP00000007619/1-744 FMQIARDVDG AGNYLMLTHK QVAQLHPLSC YSVARKMPEW VLFHKFSIAN ENSTTRP00000002975/1-742 FMQIARDVDG SGNYLMLTHK QVAQLHPLSC YSVTKKMPEW VLFHKFSISD bmy_21525T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU004749/1-712 FMQIARDVDG SGNYLMLTHK QVAQLHPLSC YSVTKKMPEW VLFHKFSISD 701 750 ENSP00000284690/1-743 NNYIRITSEI SPELFMQLVP QYYFSNLPPS ESKDILQQVV DHLSPVSTMN ENSBTAP00000007619/1-744 NNYIRTASEI APELFMQLAP QYYFSNLPPS ESKDILQQVM DHLSPISTSK ENSTTRP00000002975/1-742 NNYIRIASEI SPELFMQLAP QYYFSNLPPS ESKDILQQVM DHLSPISTMK bmy_21525T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU004749/1-712 NNYIRIASEI SPEL------ ---------- ---------- ---------- 751 800 ENSP00000284690/1-743 KEQQMCETCP E-TEQRCTLQ ENSBTAP00000007619/1-744 KEQ-MCDKCP ETTEQRCSVQ ENSTTRP00000002975/1-742 KEQKMCEKCP ETTEQRCTIQ bmy_21525T0/1-438 ---------- ---------- BACU004749/1-712 ---------- ----------