KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:32 2014 Check: 00 .. Name: ENSTTRP00000005829/1-765 Len: 889 Check: 4897 Weight: 1.00 Name: ENSBTAP00000007626/1-747 Len: 889 Check: 1338 Weight: 1.00 Name: ENSP00000352138/1-757 Len: 889 Check: 4390 Weight: 1.00 Name: bmy_15530T0/1-871 Len: 889 Check: 7306 Weight: 1.00 Name: BACU003910/1-696 Len: 889 Check: 1476 Weight: 1.00 // 1 50 ENSTTRP00000005829/1-765 MLSLLVWILT LSDTXXX--- ---------- ---------- ---------- ENSBTAP00000007626/1-747 TLALT----- ---------- ---------- ---------- ---------- ENSP00000352138/1-757 MLSLLVWILT LSDTFSQ--- ---------- ---------- ---------- bmy_15530T0/1-871 MLSLLVWILT LSDTFSQGSG LVVRKSSRRS LWTLDLSSCH PNPRKYGVGV BACU003910/1-696 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005829/1-765 ---------- ---------- ------XTQT RFSQEPADQT VVAGQRAVLP ENSBTAP00000007626/1-747 ---------- ---------- ------GTQT RFSQEPADQT VVAGQRAVLP ENSP00000352138/1-757 ---------- ---------- ------GTQT RFSQEPADQT VVAGQRAVLP bmy_15530T0/1-871 GAWEARPLSG ALSSLISLPS AALALPGTQT RFSQEPADQT VVAGQRAVLA BACU003910/1-696 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005829/1-765 CVLLNYSGIV QWTKDGLALG MGQGLKAWPR YRVVGSAEAG QYNLEITDAE ENSBTAP00000007626/1-747 CVLLNYSGIV QWTKDGLALG MGQGLKAWPR YRVVGSAEAG QYNLEITDAE ENSP00000352138/1-757 CVLLNYSGIV QWTKDGLALG MGQGLKAWPR YRVVGSADAG QYNLEITDAE bmy_15530T0/1-871 CVLLNYSGIV QWTKDGLALG MGQGLKAWPR YRVVGSADAG QYNLEITDAE BACU003910/1-696 ---------- ---------- MGQGLKAWPR YRVVGSADAG QYNLEITDAE 151 200 ENSTTRP00000005829/1-765 LSDDASYECQ ATEAALRSRR AKLTVLIPPE DTRIDGGPVI LLQAGAPHNL ENSBTAP00000007626/1-747 LSDDASYECQ ATEAALRSRR AKLTVLIPPE DTRIDGGPVI LLQAGIPHNL ENSP00000352138/1-757 LSDDASYECQ ATEAALRSRR AKLTVLIPPE DTRIDGGPVI LLQAGTPHNL bmy_15530T0/1-871 LSDDASYECQ ATEAALRSRR AKLTVLIPPE DTRIDGGPVI LLQAGAPHNL BACU003910/1-696 LSDDASYECQ ATEAALRSRR AKLTVLIPPE DTRIDGGPVI LLQAGAPHNL 201 250 ENSTTRP00000005829/1-765 TCRAFNAKPA ATIIWFRDGT QQEGAVASTE LLKDGKRETT ISQLLINPTD ENSBTAP00000007626/1-747 TCRAFNAKPA ATILWFRDGT QQEGAVASTE LLKDGKRETT ISQLLINPTD ENSP00000352138/1-757 TCRAFNAKPA ATIIWFRDGT QQEGAVASTE LLKDGKRETT VSQLLINPTD bmy_15530T0/1-871 TCRAFNAKPA ATIIWFRDGT QQEGAIASTE LLKDGKRETT ISQLLINPTD BACU003910/1-696 TCRAFNAKPA ATIIWFRDGT QQEGAVASTE LLKDGKRETT ISQLLINPTD 251 300 ENSTTRP00000005829/1-765 LDIGRVFTCR SVNEAIPSGK ETSIELDVHH PRTVTLSIEP QTVQEGERVV ENSBTAP00000007626/1-747 LDIGRVFTCR SVNEAIPSGK ETSIELDVHH PPTVTLSIEP QTVQEGERVI ENSP00000352138/1-757 LDIGRVFTCR SMNEAIPSGK ETSIELDVHH PPTVTLSIEP QTVQEGERVV bmy_15530T0/1-871 LDIGRVFTCR SVNEAIPSGK ETSIELDVHH PPTVTLSIEP QTVQEGERVV BACU003910/1-696 LDIGRVFTCR SVNEAIPSGK ETSIELDVHH PPTVTLSIEP QTVQEGERVV 301 350 ENSTTRP00000005829/1-765 --TQATANPE ILGYRWAKGG FLIEDAHESR YETNVDYSFF TEPVSCEVYN ENSBTAP00000007626/1-747 FTCQATANPE ILGYRWAKGG FLIEDAHESR YETNVDYSFF TEPVSCEVHN ENSP00000352138/1-757 FTCQATANPE ILGYRWAKGG FLIEDAHESR YETNVDYSFF TEPVSCEVHN bmy_15530T0/1-871 FTCQATANPE ILGYRWAKGG FLIEDAHESR YETNVDYSFF TEPVSCEVHN BACU003910/1-696 FTCQATANPE ILGYRWAKGG FLIEDAHESR YETNVDYSFF TEPVSCEVHN 351 400 ENSTTRP00000005829/1-765 KVGSTNVSTL VNVHFAPRIV VDPKPTTTDI GSDVTLTCVW VGNPPLTLTW ENSBTAP00000007626/1-747 KVGSTNVSTL VNVHCCPSDC IDPKPTTTDI GSDVTLTCVW VGNPPLTLTW ENSP00000352138/1-757 KVGSTNVSTL VNVHFAPRIV VDPKPTTTDI GSDVTLTCVW VGNPPLTLTW bmy_15530T0/1-871 KVGSTNVSTL VNVHFAPRIV VDPKPTTTDI GSDVTLTCVW VGNPPLTLTW BACU003910/1-696 KVGSTNVSTL VNVHFAPRIV VDPKPTTTDI GSDVTLTCVW VGNPPLTLTW 401 450 ENSTTRP00000005829/1-765 TKKDSNMXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007626/1-747 TKKDSNMVLS NSNQLLLKSV TQADAGTYT- ---------- -----CRAIV ENSP00000352138/1-757 TKKDSNMVLS NSNQLLLKSV TQADAGTYT- ---------- -----CRAIV bmy_15530T0/1-871 TKKDSNMVLS NSNQLLLKSV TQADAGTYT- ---------- -----CRAIV BACU003910/1-696 TKKDSNMVLS NSNQLLLKSV TQADAGTYT- ---------- -----CRAIV 451 500 ENSTTRP00000005829/1-765 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA ENSBTAP00000007626/1-747 PRIGVAEREV PLYVNGPPII SSEAVQYAVR GDGGKVECFI GSTPPPDRIA ENSP00000352138/1-757 PRIGVAEREV PLYVNGPPII SSEAVQYAVR GDGGKVECFI GSTPPPDRIA bmy_15530T0/1-871 PRIGVAEREV PLYVNGPPII SSEAVQYAVR GDGGKVECFI GSTPPPDRIA BACU003910/1-696 PRIGVAEREV PLYVNGPPII SSEAVQYAVR GDGGKVECFI GSTPPPDRIA 501 550 ENSTTRP00000005829/1-765 WAWKENFLEV GTLERYTVER TNSGSGVLST LTINNVMEAD FQTHYNCTAW ENSBTAP00000007626/1-747 WAWKENFLEV GTLERYTVER TNSGSGVLST LTINNVMEAD FQTHYNCTAW ENSP00000352138/1-757 WAWKENFLEV GTLERYTVER TNSGSGVLST LTINNVMEAD FQTHYNCTAW bmy_15530T0/1-871 WAWKENFLEV GTLERYTVER TNSGSGVLST LTINNVMEAD FQTHYNCTAW BACU003910/1-696 WAWKENFLEV GTLERYTVER TNSGSGVLST LTINNVMEAD FQTHYNCTAW 551 600 ENSTTRP00000005829/1-765 NSFGPGTAII QLEER--EVL PVGIIAGVTI GSTLLFLFI- --LVFFLYRR ENSBTAP00000007626/1-747 NSFGPGTAII QLEERAEEVL PVGIIAGATI GAGILLIFFF IALVFFLYRR ENSP00000352138/1-757 NSFGPGTAII QLEER--EVL PVGIIAGATI GASILLIFFF IALVFFLYRR bmy_15530T0/1-871 NSFGPGTAII QLEER--EVL PVGIIAGATI GAGILLIFFF IALVFFLYRR BACU003910/1-696 NSFGPGTAII QLEER--EVL PVGIIAGATI GAGILLIFFF IALVFFLYRR 601 650 ENSTTRP00000005829/1-765 X--------- ---------- ---------- ---------- ---------- ENSBTAP00000007626/1-747 RKGS------ ---------- ---------- ---------- ---------- ENSP00000352138/1-757 RKGS------ ---------- ---------- ---------- ---------- bmy_15530T0/1-871 RKGSEYGPCS GLSPPGGPQQ AGPGRGEGVD SGAPQARRVQ KQPLQRLAES BACU003910/1-696 RKGS------ ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000005829/1-765 ---------X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007626/1-747 ---------R KDVTLRKLDI KVETVNREPL TMHSDREDDT ASVSTATRVM ENSP00000352138/1-757 ---------R KDVTLRKLDI KVETVNREPL TMHSDREDDT ASVSTATRVM bmy_15530T0/1-871 VQAAFPVPGR KDVTLRKLDI KVETVNREPL TMHSDREDDT ASVSTATRVM BACU003910/1-696 ---------R KDVTLRKLDI KVETVNREPL TMHSDREDDT ASVSTATRVM 701 750 ENSTTRP00000005829/1-765 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KDPTNGYYNV RAHEDRPSSR ENSBTAP00000007626/1-747 KAIYSSFKDD VDLKQDLRCD TIDTREEYEM KDPTNGYYNV RAHEDRPSSR ENSP00000352138/1-757 KAIYSSFKDD VDLKQDLRCD TIDTREEYEM KDPTNGYYNV RAHEDRPSSR bmy_15530T0/1-871 KAIYSSFKDD VDLKQDLRCD TIDTREEYEM KDPTNGYYNV RAHEDRPSSR BACU003910/1-696 KAIYSSFKDD VDLKQDLRCD TIDTREEYEM KDPTNGYYNV RAHEDRPSSR 751 800 ENSTTRP00000005829/1-765 AVLYADYRAP GPARFDGRPS SRLSHSSGYA QLNTYSRAPA SDYGPEPTPP ENSBTAP00000007626/1-747 AVLYADYRAP GPARFDGRPS SRLSHSSGYA QLNTYSRAPA PDYGPEPTPP ENSP00000352138/1-757 AVLYADYRAP GPARFDGRPS SRLSHSSGYA QLNTYSRGPA SDYGPEPTPP bmy_15530T0/1-871 AVLYADYRAP GPARFDGRPS SRLSHSSGYA QLNTYSRAPA SDYGPEPTPP BACU003910/1-696 AVLYADYRAP GPARFDGRPS SRLSHSSGYA QLNTYSRAPA SDYGPEPTPP 801 850 ENSTTRP00000005829/1-765 GPAAPAGTDT TSQLSYENYE KFNSHPFPGA AGYPTYRLGY PQGPPSGLER ENSBTAP00000007626/1-747 GPAAPAGNDT ASQLSYENYE KFNSHPFPGA AGYPTYRLGY PQAPPSGLER ENSP00000352138/1-757 GPAAPAGTDT TSQLSYENYE KFNSHPFPGA AGYPTYRLGY PQAPPSGLER bmy_15530T0/1-871 GPAAPAGTDT TSQLSYENYE KFNSHPFPGA AGYPTYRLGY PQAPPSGLER BACU003910/1-696 GPAAPAGTDT TSQLSYENYE KFNSHPFPGA AGYPTYRLGY PQAPPSGLER 851 900 ENSTTRP00000005829/1-765 TPYEAYDPIG KYATATRFSY TSQHSDYGQR FQQRMQTHV ENSBTAP00000007626/1-747 TPYEAYDPIG KYATATRFSY TSQHSDYGQR FQQRMQTHV ENSP00000352138/1-757 TPYEAYDPIG KYATATRFSY TSQHSDYGQR FQQRMQTHV bmy_15530T0/1-871 TPYEAYDPIG KYATATRFSY TSQHSDYGQR FQQRMQTHV BACU003910/1-696 TPYEAYDPIG KYATATRFSY TSQHSDYGQR FQQRMQTHV