KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:36 2014 Check: 00 .. Name: BACU013319/1-499 Len: 617 Check: 3080 Weight: 1.00 Name: ENSP00000264596/1-605 Len: 617 Check: 3442 Weight: 1.00 Name: ENSBTAP00000007661/1-606 Len: 617 Check: 2455 Weight: 1.00 Name: bmy_03959T0/1-578 Len: 617 Check: 2609 Weight: 1.00 Name: ENSTTRP00000012548/1-606 Len: 617 Check: 3283 Weight: 1.00 // 1 50 BACU013319/1-499 ---MVEGPG- --CTLNGEKI RARVRPGQAV TDMRGRALQS PGGPGSPPSA ENSP00000264596/1-605 ---MVEGPG- --CTLNGEKI RARVLPGQAV TGVRGSALRS LQGRALRLAA ENSBTAP00000007661/1-606 ---MVEGPG- --CTLNGEKI RARVRPGQAV TDVRGRALQG LGGPGSPPAA bmy_03959T0/1-578 MPISITGSLL SSCGLTGCDF -AIVLQG--- -ALRDREPAL L----IKSGV ENSTTRP00000012548/1-606 ---MVEGPG- --CTLNGEKI RARVRPGQAV TDMRGRALQS PGGPGSPPSA 51 100 BACU013319/1-499 SGAAGSSQAA ALNNNKDSSQ NFLRLFNGHI YSGVETLGKE LFMYFGPKAL ENSP00000264596/1-605 STVVVSPQAA ALNN--DSSQ NVLSLFNGYV YSGVETLGKE LFMYFGPKAL ENSBTAP00000007661/1-606 PGPMGTSQAA ALNNNKNSSQ DFLRLFNGHG YSGVETLGKE LFMYFGPKAL bmy_03959T0/1-578 SANLLPAQAA ALNNNKDSSQ NFLRLFNGHI YSGVETLGKE LFMYFGPKAL ENSTTRP00000012548/1-606 SGAAGSSQAA ALNNNKDSSQ NFLRLFNGHI YSGVETLGKE LFMYFGPKAL 101 150 BACU013319/1-499 RIHFGMKGSL VINPVKSKNK NGLSPVFEVQ LTKDLICFFD SSVEIRNSAE ENSP00000264596/1-605 RIHFGMKGFI MINPLEYKYK NGASPVLEVQ LTKDLICFFD SSVELRNSME ENSBTAP00000007661/1-606 RIHFGMKGSL VINPLESKNK NGVSPVFEVQ LTKDLICFFD SSVEIRNSTE bmy_03959T0/1-578 RIHFGMKGSL VINPVKSKNK NGLSPVFEVQ LTKDLICFFD SSVEIRNSAE ENSTTRP00000012548/1-606 RIHFGMKGFL VINPVKSKNK NGLPPVFEVQ LTKDLICFFD SSVEIRNSAE 151 200 BACU013319/1-499 SQERIRMMEE LDVCSPNFSF SRAESEVTKQ RGRMLCDVLM DQKVLPGVGN ENSP00000264596/1-605 SQQRIRMMKE LDVCSPEFSF LRAESEVKKQ KGRMLGDVLM DQNVLPGVGN ENSBTAP00000007661/1-606 SQQRIRVMEE LDVCSPRFSF SRAESEVKKQ KGRMLCDVLM DQKVLPGVGN bmy_03959T0/1-578 SQQRIRMMEE LDVCSPNFSF SRAESEVKKQ RGRMLCDVLM DQKVLPGVGN ENSTTRP00000012548/1-606 SQQRIRMMEE LDVCSPNFSF PRAESEVKKQ RGRMLCDVLM DQKVLPGVGN 201 250 BACU013319/1-499 IIKNEALFDS GLHPAVKVCQ LTHEQIHHLV KMIHDFSLLL YRCHKAGSAV ENSP00000264596/1-605 IIKNEALFDS GLHPAVKVCQ LTDEQIHHLM KMIRDFSILF YRCRKAGLAL ENSBTAP00000007661/1-606 IIKNEALFDS GFHPSVKVCQ LTDEQIHHLV KMIRNFSILF YRCCKVGSAL bmy_03959T0/1-578 IIKNEALFDS GLHPAVK--- ---------- ---------- --CHKAGSAV ENSTTRP00000012548/1-606 IIKNEALFDS GLHPAVKVCQ LTDEQTHHLV KMIRDFSLLF YRCHKAGSAV 251 300 BACU013319/1-499 SNHYKVYKRP NCGQCCCKIT VCRLGENKRM TYFCPHCQKE NPQHADICLQ ENSP00000264596/1-605 SKHYKVYKRP NCGQCHCRIT VCRFGDNNRM TYFCPHCQKE NPQHVDICKL ENSBTAP00000007661/1-606 SKHYKVYKRP NCGQCCCKIT VCRLGENNRM TYFCPHCQKE NPQHVDIRML bmy_03959T0/1-578 SNHYKVYKRP NCGQCCCKIT VCRLGENKRM TYFCPHCQKE NPQHADICRL ENSTTRP00000012548/1-606 SNHYKVYKRP NCGQCCCKIT VCRLGENKRM TYFCPQCQKE NAQHVDICRL 301 350 BACU013319/1-499 DVGS------ QARGRDQAPV VEAPSPNHWT NREPQTPGNI NQSKASRRSS ENSP00000264596/1-605 PTRNTIISWT SSRVDHVMDS VARKSEEHWT C---VVCTLI NKPSSKACDA ENSBTAP00000007661/1-606 PVRNTTVNWP SSRERHLMDC VAQKSEEQWT C---EVCTLI NKLSSKTCDA bmy_03959T0/1-578 PARNTTVSWP SSRGGHLTDS VARKSEEQWT C---EVCTLI NQPSSRACDA ENSTTRP00000012548/1-606 PARNTTVSWP SSRGGHLMDS VARKSEEQWT C---EVCTLI NKPSSEACDA 351 400 BACU013319/1-499 C--------- ---QHQDLDL SNCLQTPVLD VSGQTTSKTG IQHH------ ENSP00000264596/1-605 CLTSRPIDSV LKSEENSTVF SHLMKYPC-N TFGKPHTEVK INRKTAFGTT ENSBTAP00000007661/1-606 CLTSRPADSV LRNEGNPIVF NNLMKYPC-N SFGKSKAKVK INRKTAFGTT bmy_03959T0/1-578 CLTSRPADLV PKNEENPIAF NSLVKYPC-N SFGKPRTEVK INRKTAFGTA ENSTTRP00000012548/1-606 CLTSRPTDSV PKNEENPIAF NSLVKYPC-N SFGKPRTEVK INRKTAFGTT 401 450 BACU013319/1-499 ------LSKR GSKQKKKMK- ---PQKNMLQ VKEQGKNLQD QIN--EDEIG ENSP00000264596/1-605 TLVLTDFSNK SSTLERKTKQ NQILDEEFQN SPPASVCLND IQHPSKKTTN ENSBTAP00000007661/1-606 TLVLTDFSNK HSALEREESH SHIPDGEFPS -PPPNVCGSD TLNTSKERTN bmy_03959T0/1-578 TLVLTDFSNK SSALEXEESQ NQILDGEFLN -PPTNVCFSD TVHPSKERTN ENSTTRP00000012548/1-606 TLVLTDFSNK SSALGREESQ NQILDGEFPN -PPTNVCFSD TVHSSKERTN 451 500 BACU013319/1-499 NLTEKEFRVL IVKMI---RN LGDRIDKMQE TLTKDLEELK S-----KQTE ENSP00000264596/1-605 DITQPSSKVN ISPTISSESK LFSPAHKKPK TAQYSSPELK SCNPGYSNSE ENSBTAP00000007661/1-606 CRSQPSDKVN ISPVVCSQYK LFSPAHKKLK TTHYSSPDLK SCNPGFSNSE bmy_03959T0/1-578 YRTQLSNKVN ISSVVCSPSK LFSPAYKKFK TTHYXSRDLK SGNPGFFNRE ENSTTRP00000012548/1-606 YRTQLSNKVN ISSMVCSPSK LFSPAYKRLK TTHCSSRDLK SGNPGFSNRE 501 550 BACU013319/1-499 MNNTITEIKN ILEGTSSRIT ---------- ---------- ---------E ENSP00000264596/1-605 LQINMTDGPR TLNPDSPRCS KHNRLCILRV VGKDGENKGR QFYACPLPRE ENSBTAP00000007661/1-606 LQSSMTDGPC LLNAGSPRCS KHGRPCALRV VRKSGENKGR HFYACPLARE bmy_03959T0/1-578 LQSNTTDGPR SLNARSPRCS KHDRPCVLRV VRKDGENKGR HFYACPLPKE ENSTTRP00000012548/1-606 RQSNTPGGPR SLNACSPRCS KHDRPCVLQV VRKDGENKGR HFYACPLPRE 551 600 BACU013319/1-499 AEEQVSELED KTVEITAREQ KR-------- -KNNEKN--- ---------- ENSP00000264596/1-605 AQCGFFEWAD LSFPFCNHGK RSTMKTVLKI GPNNGKNFFV CPLGKEKQCN ENSBTAP00000007661/1-606 AQCGFFEWAD LSFPFCNHGK RSIMRTVLKI GPNNGKNFFV CPLGKEKQCN bmy_03959T0/1-578 AQCGFFEWAD LSFPFCSHGK RSIMRTVLKI GPNNGKNFFV CPLGKEKQCN ENSTTRP00000012548/1-606 AQCGFFEWAD LSFPFCNHGK RSIMRTVLKI GPNNGKNFFV CPLGKEKQCS 601 650 BACU013319/1-499 ---------- ------- ENSP00000264596/1-605 FFQWAENGPG IKIIPGC ENSBTAP00000007661/1-606 FFQWAQNGPG INIIPGC bmy_03959T0/1-578 FFQWAENGPG INIIPGC ENSTTRP00000012548/1-606 FFQWAENGPG INIIPGC