KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:36 2014 Check: 00 .. Name: bmy_05574T0/1-631 Len: 908 Check: 4890 Weight: 1.00 Name: ENSTTRP00000003944/1-907 Len: 908 Check: 9567 Weight: 1.00 Name: ENSP00000230124/1-907 Len: 908 Check: 7678 Weight: 1.00 Name: BACU014211/1-907 Len: 908 Check: 7532 Weight: 1.00 Name: ENSBTAP00000007665/1-907 Len: 908 Check: 8336 Weight: 1.00 // 1 50 bmy_05574T0/1-631 MEIKPSRNKA FLEKLLL--K NLRYFLVGSN HAETKYRVLK IDRTEPKDLV ENSTTRP00000003944/1-907 MPAAAAPIIS SVQKLVLYET RARYFLVGSN HAETKYRVLK IDRTEPKDLV ENSP00000230124/1-907 MPTAAAPIIS SVQKLVLYET RARYFLVGSN NAETKYRVLK IDRTEPKDLV BACU014211/1-907 MPAAAAPIIS SVQKLVLYET RARYFLVGSN HAETKYRVLK IDRTEPKDLV ENSBTAP00000007665/1-907 MPAAAAPIIS SVQKLVLYET RARYFLVGSN HAETKYRVLK IDRTEPKDLV 51 100 bmy_05574T0/1-631 IIDDRHVYTQ QEVRELLGRL DLGNRTKMGQ KGSSGLFRAV SAFGVVGFVR ENSTTRP00000003944/1-907 IIDDRHVYTQ QEVRELLGRL DLGNRTKMGQ KGSSGLFRAV SAFGVVGFVR ENSP00000230124/1-907 IIDDRHVYTQ QEVRELLGRL DLGNRTKMGQ KGSSGLFRAV SAFGVVGFVR BACU014211/1-907 IIDDRHVYTQ QEVRELLGRL DLGNRTKMGQ KGSSGLFRAV SAFGVVGFVR ENSBTAP00000007665/1-907 IIDDRHVYTQ QEVRELLGRL DLGNRTKMGQ KGSSGLFRAV SAFGVVGFVR 101 150 bmy_05574T0/1-631 FLEGYYIVLI TKRRKMADIG GHAIYKIEDT NMIYIPNDSV RITHPDEA-- ENSTTRP00000003944/1-907 FLEGYYIVLI TKRRKMADIG GHAIYKIEDT NMIYIPNDSV RITHPDEARY ENSP00000230124/1-907 FLEGYYIVLI TKRRKMADIG GHAIYKVEDT NMIYIPNDSV RVTHPDEARY BACU014211/1-907 FLEGYYIVLI TKRRKMADIG GHAIYKIEDT NMIYIPNDSV RITHPDEARY ENSBTAP00000007665/1-907 FLEGYYIVLI TKRRKMADIG GHAVYKIEDT NMIYIPNDSV RISHPDEARY 151 200 bmy_05574T0/1-631 ---------- -----SYSYD LSHSLQYNLT VLRMPLEMLK SETTQTRQES ENSTTRP00000003944/1-907 LRIFQNVDLS SNFYFXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000230124/1-907 LRIFQNVDLS SNFYFSYSYD LSHSLQYNLT VLRMPLEMLK SEMTQNRQES BACU014211/1-907 LRVFQNVDLS SNFYFSYSYD LSHSLQYNLT VLRMPLEMLK SETTQTRQES ENSBTAP00000007665/1-907 LRIFQNVDLS SNFYFSYSYD LSHSLQYNLT VLRMPLEMLK SETTQTRQES 201 250 bmy_05574T0/1-631 FDIFEDEGLI TQGGSGVFGI CGEPYMKYVW NGELLDIIKN TVHRDWLLYI ENSTTRP00000003944/1-907 XXXXXXXXXX XXGGSGVFGI CSEPYMKYVW NGELLDIIKN TVHRDWLLYI ENSP00000230124/1-907 FDIFEDEGLI TQGGSGVFGI CSEPYMKYVW NGELLDIIKS TVHRDWLLYI BACU014211/1-907 FDIFEDEGLI TQGGSGVFGI CSEPYMKYVW NGELLDIIKN TVHRDWLLYI ENSBTAP00000007665/1-907 FDIFEDEGLI TQGGNGVFGI SSEPYMKYVW NGELLDIIKN TVHRDWLLYI 251 300 bmy_05574T0/1-631 IHGFCGQSKL LIYGRPVYVT LIARRSSKFA GTRFLKRGAN CEGDVANEVE ENSTTRP00000003944/1-907 IHGFCGQSKL LIYGRPVYVT LIARRSSKFA GTRFLKRGAN CEGDVANEVE ENSP00000230124/1-907 IHGFCGQSKL LIYGRPVYVT LIARRSSKFA GTRFLKRGAN CEGDVANEVE BACU014211/1-907 IHGFCGQSKL LIYGRPVYVT LIARRSSKFA GTRFLKRGAN CEGDVANEVE ENSBTAP00000007665/1-907 IHGFCGQSKL LIYGRPVYVT LIARRSSKFA GTRFLKRGAN CEGDVANEVE 301 350 bmy_05574T0/1-631 TEQILCDASV MSFTAGSYSS YVQVRGSVPL YWSQDISTMM PKPPITLDQA ENSTTRP00000003944/1-907 TEQILCDASV MSFTAGSYSS YVQVRGSVPL YWSQDISTMM PKPPITLDQA ENSP00000230124/1-907 TEQILCDASV MSFTAGSYSS YVQVRGSVPL YWSQDISTMM PKPPITLDQA BACU014211/1-907 TEQILCDASV MSFTAGSYSS YVQVRGSVPL YWSQDISTMM PKPPITLDQA ENSBTAP00000007665/1-907 TEQMLCDASV MSFTAGSYSS YVQVRGSVPL YWSQDISTMM PKPPITLDQA 351 400 bmy_05574T0/1-631 DPFAHVAALH FDQMLQRFGS PIIILNLVKE REKRKHERIL SEELVAAVTY ENSTTRP00000003944/1-907 DPFAHVAALH FDQMLQRFGS PIIILNLVKE REKRKHERIL SEELVAAVTY ENSP00000230124/1-907 DPFAHVAALH FDQMFQRFGS PIIILNLVKE REKRKHERIL SEELVAAVTY BACU014211/1-907 DPFAHVAALH FDQMLQRFGS PIIILNLVKE REKRKHERIL SEELVAAVTY ENSBTAP00000007665/1-907 DPFAHVAALH FDQMLQRFGS PIIVLNLVKE REKRKHERIL SEELVAAVTY 401 450 bmy_05574T0/1-631 LNQFLPPEHR IIYIPWDMAK YTKSKLCNVL DRLNVIAESV VKKTGFFVNR ENSTTRP00000003944/1-907 LNQFLPPEHT IIYIPWDMAK YTKSKLCNVL DRLNVIAESV VKKTGFFVNR ENSP00000230124/1-907 LNQFLPPEHT IVYIPWDMAK YTKSKLCNVL DRLNVIAESV VKKTGFFVNR BACU014211/1-907 LNQFLPPEHR IIYIPWDMAK YTKSKLCNVL DRLNVIAESV VKKTGFFVNR ENSBTAP00000007665/1-907 LNQFLPPEHT IIYIPWDMAK YTKSKLCNVL DRLNVIAESV VKKTGFFVNR 451 500 bmy_05574T0/1-631 PDSYCSILRP DEKWNELGGC VISTGRLQTG VLRTNCVDCL DRTNTAQFMV ENSTTRP00000003944/1-907 PDSYCSILRP DEKWNELGGC VISTGRLQTG VLRTNCVDCL DRTNTAQFMV ENSP00000230124/1-907 PDSYCSILRP DEKWNELGGC VIPTGRLQTG ILRTNCVDCL DRTNTAQFMV BACU014211/1-907 PDSYCSILRP DEKWNELGGC VISTGRLQTG VLRTNCVDCL DRTNTAQFMV ENSBTAP00000007665/1-907 PDSYCSILRP DEKWNELGGC VIPTGRLQTG VLRTNCVDCL DRTNTAQFMV 501 550 bmy_05574T0/1-631 GKCALAYQLY SLGLIDKPNL QFDTDAVRLF EELYEDHGDT LSLQYGGSQL ENSTTRP00000003944/1-907 GKCALAYQLY SLGLIDKPNL QFDTDAVRLF EELYEDHGDT LSLQYGGSQL ENSP00000230124/1-907 GKCALAYQLY SLGLIDKPNL QFDTDAVRLF EELYEDHGDT LSLQYGGSQL BACU014211/1-907 GKCALAYQLY SLGLIDKPNL QFDTDAVRLF EELYEDHGDT LSLQYGGSQL ENSBTAP00000007665/1-907 GKCALAYQLY SLGLIDKPNL QFDTDAVRLF EELYEDHGDT LSLQYGGSQL 551 600 bmy_05574T0/1-631 VHRVKTYRKI APWTQHSKDI MQTLSRYYSN AFS------- ---------- ENSTTRP00000003944/1-907 VHRVKTYRKI APWTQHSKDI MQTLSRYYSN AFSDADRQDS INLFLGVFHP ENSP00000230124/1-907 VHRVKTYRKI APWTQHSKDI MQTLSRYYSN AFSDADRQDS INLFLGVFHP BACU014211/1-907 VHRVKTYRKI APWTQHSKDI MQTLSRYYSN AFSDADRQDS INLFLGVFHP ENSBTAP00000007665/1-907 VHRVKTYRKI APWTQHSKDI MQTLSRYYSN AFSDADRQDS INLFLGVFHP 601 650 bmy_05574T0/1-631 --------EI ATCSYLAER- ---------- ---------- ---------- ENSTTRP00000003944/1-907 TEGKPHLWEL PTDFYLHHKN TMRLLPTRRS YTYWWTPEVI KHLPLPYDEV ENSP00000230124/1-907 TEGKPHLWEL PTDFYLHHKN TMRLLPTRRS YTYWWTPEVI KHLPLPYDEV BACU014211/1-907 TEGKPHLWEL PTDFYLHHKN TMRLLPTRRS YTYWWTPEVI KHLPLPYDEV ENSBTAP00000007665/1-907 TEGKPHLWEL PTDFYLHHKN TMRLLPTRRS YTYWWTPEVI KHLPLPYDEV 651 700 bmy_05574T0/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003944/1-907 ICAANLKKLI VKKFHKYEEE IDIHNEFFRP YELSSFDDTF CLAMTSSARD ENSP00000230124/1-907 ICAVNLKKLI VKKFHKYEEE IDIHNEFFRP YELSSFDDTF CLAMTSSARD BACU014211/1-907 ICAANLKKLI VKKFHKYEEE IDIHNEFFRP YELSSFDDTF CLAMTSSARD ENSBTAP00000007665/1-907 ICAANLKKLV VKKFHKYEEE IDIHNEFFRP YELSSFDDTF CLAMTSSARD 701 750 bmy_05574T0/1-631 --------DP SSFTI-QPKS CWKEI----- ---------- ---------- ENSTTRP00000003944/1-907 FMPKTFGIDP SPFTVRKPDE TGKSVLGNKS NREEAVLQRK TAASAPPPPS ENSP00000230124/1-907 FMPKTVGIDP SPFTVRKPDE TGKSVLGNKS NREEAVLQRK TAASAPPPPS BACU014211/1-907 FMPKTFGIDP SPFTVRKPDE TGKSVLGNKS NREEAVLQRK TAASAPPPPS ENSBTAP00000007665/1-907 FMPKTVGIDP SPFTVRKPDE TGKSVLGNKS NREEAVLQRK TAASAPPPPS 751 800 bmy_05574T0/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003944/1-907 EEAVSSSSED DSGTDREEEG SVSQRSTPVK MTDTGDSAKV TENVVQPMKE ENSP00000230124/1-907 EEAVSSSSED DSGTDREEEG SVSQRSTPVK MTDAGDSAKV TENVVQPMKE BACU014211/1-907 EEAVSSSSED DSGTDREEEG SVSQRSTPVK MTDTGDSAKV TENVVQPMKE ENSBTAP00000007665/1-907 EEAVSSSSED DSGTDREEEG SVSQRSTPVK MTDLGDSAKV TENVVQPMKE 801 850 bmy_05574T0/1-631 ---------- ---DFMIMLS CF-------- --KSSHFYCA ---------- ENSTTRP00000003944/1-907 VYGINLSDGL SEEDLSIYLR FVQLGQSQHK QDKSSQQFCS RCPDGVIKLT ENSP00000230124/1-907 LYGINLSDGL SEEDFSIYSR FVQLGQSQHK QDKNSQQPCS RCSDGVIKLT BACU014211/1-907 VYGINLSDGL SEEDLSIYLR FVQLGQSQHK QDKSSQQFCS RCPDGVIKLT ENSBTAP00000007665/1-907 VYGINLSDGL SEEDLSIYLR FVQLGQSQHK QDKSSQQFCS RCPDGVIKLT 851 900 bmy_05574T0/1-631 ---VFLKEVI YIVEACPRLE ---------- ---------- ---------- ENSTTRP00000003944/1-907 PISAFSQDNI YEVQP-PQVD RKSTEIFQAH IQASQGIMQP LGKEDTSMYR ENSP00000230124/1-907 PISAFSQDNI YEVQP-PRVD RKSTEIFQAH IQASQGIMQP LGKEDSSMYR BACU014211/1-907 PISAFSQDNI YEVQP-PQVD RKSTEIFQAH IQASQGIMQP LGKEDTSMYR ENSBTAP00000007665/1-907 PISAFSQDNI YEVQP-PKVD RKSTEIFHAH IQASQGIMQP LGKEDTSMYR 901 950 bmy_05574T0/1-631 -YTRDRR- ENSTTRP00000003944/1-907 EYIRNRYL ENSP00000230124/1-907 EYIRNRYL BACU014211/1-907 EYIRNRYL ENSBTAP00000007665/1-907 EYIRNRYL