KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:37 2014 Check: 00 .. Name: ENSTTRP00000012249/1-666 Len: 825 Check: 7522 Weight: 1.00 Name: BACU002141/1-733 Len: 825 Check: 446 Weight: 1.00 Name: ENSP00000375777/1-760 Len: 825 Check: 7345 Weight: 1.00 Name: ENSBTAP00000007668/1-761 Len: 825 Check: 3140 Weight: 1.00 Name: bmy_06590T0/1-680 Len: 825 Check: 3466 Weight: 1.00 // 1 50 ENSTTRP00000012249/1-666 ---------- ---------- ---------- ---------- ---------- BACU002141/1-733 -------MPA DSVKWLAGAL GRGCGTSPSP WADSSG---- ---------- ENSP00000375777/1-760 MMEERAAAAV AAAASSCRPL GSGAGPGPTG AAPVSAPAPG -----PGPAG ENSBTAP00000007668/1-761 MMEERAAAAV AAAASSCRPL GSGAGPGPTG AALVSGAARG TPHSVPDQVR bmy_06590T0/1-680 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012249/1-666 ---------- ---------- ---------- ---------- ---------- BACU002141/1-733 ---------- ---------- ---------- ---------- ---------K ENSP00000375777/1-760 KGGGGGGSPG PTAGPEPLSL PGILHFIQHE WARF-EAEKA RWEAERAELQ ENSBTAP00000007668/1-761 FGGGARWTPG GVGGPGPQRF PSLWHSTSEH GTQVGEPEPC RPPPPSVHPQ bmy_06590T0/1-680 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012249/1-666 AQVAFLQGER KGQENLKTDL VRRIKMLEYA LKQERAKYHK LKFGTDLNQG BACU002141/1-733 AQVAFLQGER KGQENLKTDL VRRIKMLEYA LKQERAKYHK LKFGTDLNQG ENSP00000375777/1-760 AQVAFLQGER KGQENLKTDL VRRIKMLEYA LKQERAKYHK LKFGTDLNQG ENSBTAP00000007668/1-761 AQVAFLQGER KGQENLKTDL VRRIKMLEYA LKQERAKYHK LKFGTDLNQG bmy_06590T0/1-680 ---------- ---------- -----MLEYA LKQERAKYHK LKFGTDLNQG 151 200 ENSTTRP00000012249/1-666 EKKPELSEQV SNGPVESVTL ENSPLVWKEG RQLLRQYLEE VGYTDTILDM BACU002141/1-733 EKKPELSEQV SNGPLESVTL ENSPLVWKEG RQLLRQYLEE VGYTDTILDM ENSP00000375777/1-760 EKKADVSEQV SNGPVESVTL ENSPLVWKEG RQLLRQYLEE VGYTDTILDM ENSBTAP00000007668/1-761 EKKPELSEPV SNGPVESVTL ENSPLVWKEG RQLLRQYLEE VGYTDTILDM bmy_06590T0/1-680 EKKPELSEQV SNGPLESVTL ENSPLVWKEG RQLLRQYLEE VGYTDTILDM 201 250 ENSTTRP00000012249/1-666 RSKRVRSLLG RSLELNGAME PSEGGPRATP GPGGLSGGES LLVKQIEEQI BACU002141/1-733 RSKRVRSLLG RSLELNGAVE PSEGGPRATP GPGGLSGGES LLVKQIEEQI ENSP00000375777/1-760 RSKRVRSLLG RSLELNGAVE PSEGAPRAPP GPAGLSGGES LLVKQIEEQI ENSBTAP00000007668/1-761 RSKRVRSLLG RSLELNGAAE PSEGGPRAPP VPGGLSGGES LLVKQIEEQI bmy_06590T0/1-680 RSKRVRSLLG RSLELNGAVE PSEGGPRATP GPGGLSGGES LLVKQIEEQI 251 300 ENSTTRP00000012249/1-666 K--------- ---------- ---------- ---------- RNAAGKDGKE BACU002141/1-733 KSVAL----- ---------- -----VLVCT TAPAGPAPPE AQACVLPRKH ENSP00000375777/1-760 K--------- ---------- ---------- ---------- RNAAGKDGKE ENSBTAP00000007668/1-761 K--------- ---------- ---------- ---------- RNAAGKDGRE bmy_06590T0/1-680 KSRPPGQLTR TLWGISPVAE KEDVGIYLNV KFYPPFCPGV RNAAGKDGKE 301 350 ENSTTRP00000012249/1-666 RLGGSVLEQI PFLQ--SCED EDSDEDDELD SVQHKKQRVK XXXXXXXXXX BACU002141/1-733 RAPAESRPRA TYQDQGNCED EDSDEDDELD SVQPKKQRVK LPSKALVPEM ENSP00000375777/1-760 RLGGSVLGQI PFLQ--NCED EDSDEDDELD SVQHKKQRVK LPSKALVPEM ENSBTAP00000007668/1-761 RLGGSVLEQI PFLQ--HCED DDSDEDDELD GAQHRKQRVK LPSKALAPET bmy_06590T0/1-680 RLGGSVLEQI PFLQ--NCED EDSDEDDELD SVQPKKQRVK LPSKALVPEM 351 400 ENSTTRP00000012249/1-666 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXTRRVKL BACU002141/1-733 EDEDEEDDSE DAINEFDFLG SGEDGEGSPD PRRCAGEGTH HELESRRVKL ENSP00000375777/1-760 EDEDEEDDSE DAINEFDFLG SGEDGEGAPD PRRCTVDGSP HELESRRVKL ENSBTAP00000007668/1-761 EDEDEEDDSE DAISEFDFLG SGEDGEGPHD PRRCAAEGAH HELESRRVKL bmy_06590T0/1-680 EDEDEEDDSE DAINEFDFLG SGEDGEGSPD PRRCAGEGTH HELESRRVKL 401 450 ENSTTRP00000012249/1-666 QGILADLRDV DGLPPKVTGP PPGTPQPRPH EGSFGFSSDV FIMDTIGGGE BACU002141/1-733 QGILADLRDV DGLPPKVTGP PPGTPQLRPH EGSFGFSSDV FIMDTIGGGE ENSP00000375777/1-760 QGILADLRDV DGLPPKVTGP PPGTPQPRPH EGSFGFSSDV FIMDTIGGGE ENSBTAP00000007668/1-761 QGILADLRDV DGLPPKVTGP PPGTPQPRPH E-------DV FIMDTIGGGE bmy_06590T0/1-680 QGILADLRDV DGLPPKVTGP PPGTPQPRPH EGSFGFSSDV FIMDTIGGGE 451 500 ENSTTRP00000012249/1-666 VSLGDLADLT VTNDNDLSCD ---------- ------LSDS KDAFKKTWNP BACU002141/1-733 VSLGDLADLT VTNDNDLSCD DSWGARADTE AAPPPQLSDS KDAFKKTWNP ENSP00000375777/1-760 VSLGDLADLT VTNDNDLSCD ---------- ------LSDS KDAFKKTWNP ENSBTAP00000007668/1-761 VSLGDLADLT VTNDNDLSCD ---------- ------LSDS KDAFKKTWNP bmy_06590T0/1-680 VSLGDLADLT VTNDNDLSCD ---------- ------LSDS KDAFKKTWNP 501 550 ENSTTRP00000012249/1-666 KFTLRSHYDG IRSLAFHHSQ SALLTASEDG TLKLWNLQKA VTAKKNAALD BACU002141/1-733 KFTLRSHYDG IRSLAFHHSQ SALLTASEDG TLKLWNLQKA VTAKKNAALD ENSP00000375777/1-760 KFTLRSHYDG IRSLAFHHSQ SALLTASEDG TLKLWNLQKA VTAKKNAALD ENSBTAP00000007668/1-761 KFTLRSHYDG IRSLAFHHSQ SALLTASEDG TLKLWNLQKA VTAKKNAALD bmy_06590T0/1-680 KFTLRSHYDG IRSLAFHHSQ SALLTASEDG TLKLWNLQKA VTAKKNAALD 551 600 ENSTTRP00000012249/1-666 VEPIHAFRAH RGPVLAVAMG SHSEYCYSGG TDARIHSWKI PDLNMDPYDG BACU002141/1-733 VEPIHAFRAH RGPVLAVAMG SHSEYCYSGG ADARIHSWKI PDLNMDPYDG ENSP00000375777/1-760 VEPIHAFRAH RGPVLAVAMG SNSEYCYSGG ADACIHSWKI PDLSMDPYDG ENSBTAP00000007668/1-761 VEPIHAFRAH RGPVLSVAMG SHSEYCYSGG ADARIHSWKI PDLNMDPYDG bmy_06590T0/1-680 VEPIHAFRAH RGPVLAVTMG SHSEYCYSGG ADARIHSWKI PDLNMDPYDG 601 650 ENSTTRP00000012249/1-666 Y--DPSVLSH VLEGHRDAVW GLAFSPTSQR LASCSADGTV RIWDPSSSSP BACU002141/1-733 Y--DPSVLSH VLEGHGDAVW GLAFSPTSQR LASCSADGTV RIWDPSGSSP ENSP00000375777/1-760 Y--DPSVLSH VLEGHGDAVW GLAFSPTSQR LASCSADGTV RIWDPSSSSP ENSBTAP00000007668/1-761 YGPDPSVLSH VLEGHGDAVW GLAFSPASQR LASCSADGSV RIWDPSNSSP bmy_06590T0/1-680 Y--DPSVLSH VLEGHGDAVW GLAFSPTSQR LASCSADGTV RIWDPSGSSP 651 700 ENSTTRP00000012249/1-666 TCLCTFPTAS DHGTPTSVAF TSTEPAHIVA SFRSGDTVLY DLEAGSALLT BACU002141/1-733 TCLCTFPTAS DHGTPTSVAF TSTEPAHIVA SFRSGDTVLY DLEAGSALLT ENSP00000375777/1-760 ACLCTFPTAS EHGVPTSVAF TSTEPAHIVA SFRSGDTVLY DMEVGSALLT ENSBTAP00000007668/1-761 TCLCTFSTAS DHGTPTSVAF TSTEPAHIVA SFRSGDTVLY DLEAGSALLT bmy_06590T0/1-680 TCLCTFPTAS DHGTPTSVAF TSTEPAHIVA SFRSGDTVLY DLEAGSAVLT 701 750 ENSTTRP00000012249/1-666 LDSRGNSGPT QINQVVSHPS QPLTITAHDD RGIRFLDNRT GRSVHSMVAH BACU002141/1-733 LDSRGNSGPT QINQVVSHPS RPLTITAHDD RGIRFLDNRT GKSVHSMVAH ENSP00000375777/1-760 LESRGSSGPT QINQVVSHPN QPLTITAHDD RGIRFLDNRT GKPVHSMVAH ENSBTAP00000007668/1-761 LDSRGNSGPT QINQVVSHPS QPLTITAHDD RGIRFLDNRT GKLVHSMVAH bmy_06590T0/1-680 LDSRGNSSPT QINQVVSHPS QPLTITAHDD RGIRFLDNRT GKSVHSMVAH 751 800 ENSTTRP00000012249/1-666 LDAVTCLAVD PNGVFLMSGS HDCSLRLWSL DNKTCVQEIT AHRKKHEEAI BACU002141/1-733 LDAVTCLAVD PNGVFLMSGS HDCSLRLWSL DNKTCVQEIT AHRKKHEEAI ENSP00000375777/1-760 LDAVTCLAVD PNGAFLMSGS HDCSLRLWSL DNKTCVQEIT AHRKKHEEAI ENSBTAP00000007668/1-761 LDAVTCLAVD PNGVFLMSGS HDCSLRLWSL DNKTCVQEIT AHRKKHEEAI bmy_06590T0/1-680 LDAVTCLAVD PNGVFLMSGS HDCSLRLWSL DNKTCVQEIT AHRKKHEEAI 801 850 ENSTTRP00000012249/1-666 HAVACHPSKA LIASAGADAL AKVFV BACU002141/1-733 HAVACHPSKA LIASAGADAL AKVFV ENSP00000375777/1-760 HAVACHPSKA LIASAGADAL AKVFV ENSBTAP00000007668/1-761 HAVACHPSKA LIASAGADAL AKVFV bmy_06590T0/1-680 HAVACHPSKA LIASAGADAL AKVFV