KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:38 2014 Check: 00 .. Name: ENSTTRP00000000250/1-426 Len: 472 Check: 64 Weight: 1.00 Name: ENSP00000266517/1-452 Len: 472 Check: 5549 Weight: 1.00 Name: ENSBTAP00000007669/1-403 Len: 472 Check: 5364 Weight: 1.00 Name: bmy_06512T0/1-318 Len: 472 Check: 2880 Weight: 1.00 Name: BACU016349/1-324 Len: 472 Check: 8103 Weight: 1.00 // 1 50 ENSTTRP00000000250/1-426 MLRARRRPSA DETDIPREQS LVSSAAIQTW VGESAATSCS PTA-LPLFTP ENSP00000266517/1-452 MLCGRPRSSS DNRNFLRERA GLSSAAVQTR IGNSAASRRS PAARPPVPAP ENSBTAP00000007669/1-403 ---------- ---------- ---------- ---------- ---------- bmy_06512T0/1-318 ---------- ---------- ---------- ---------- ---------- BACU016349/1-324 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000250/1-426 PALPRGRPGT EGSSSLSAPA VLVVAVAVVV VVVSAVAWAM ANYIHVPPGS ENSP00000266517/1-452 PALPRGRPGT EGSTSLSAPA VLVVAVAVVV VVVSAVAWAM ANYIHVPPGS ENSBTAP00000007669/1-403 -ALPRGRPGT EGSSSLSAPA VLVVAVAVVV VVVSAVAWAM ANYIHVPPGS bmy_06512T0/1-318 ---------- ---------- ---------- ---------M ANYIHVPPGS BACU016349/1-324 ---------- ---------- ---------- ---------- -MIFKLSP-- 101 150 ENSTTRP00000000250/1-426 PEVPKLEVTM QDQEEQRCRE GALSLLRHLR PHWDPQEVTL QLFTDGITNK ENSP00000266517/1-452 PEVPKLNVTV QDQEEHRCRE GALSLLQHLR PHWDPQEVTL QLFTDGITNK ENSBTAP00000007669/1-403 PEVPKLDVTV QDQEEQRCRE GALSLLQHLR PHWDPQEVTL QLFTDGITNK bmy_06512T0/1-318 PEVPKLDVTV QDQEEQRCRE GALSLLQHLR PHWDPQEVTL QLFTDGITNK BACU016349/1-324 --IPSLKV-- -----NNCFS PIFFFFFG-- ---------- QLFTDGITNK 151 200 ENSTTRP00000000250/1-426 LIGCYVGNTM EDVVLVRIYG NKTELLVDRD EEVKSFRVLQ AHGCAPQLYC ENSP00000266517/1-452 LIGCYVGNTM EDVVLVRIYG NKTELLVDRD EEVKSFRVLQ AHGCAPQLYC ENSBTAP00000007669/1-403 LIGCYVGNTM EDVVLVRIYG NKTELLVDRD EEVKSFRVLQ AHGCAPQLYC bmy_06512T0/1-318 LIGCYVGNTM EDVVLVRIYG NKTELLVDRD EEVKSFRVLQ AHGCAPQLYC BACU016349/1-324 LIGCYVGNTM EDVVLVRIYG NKTELLVDRD EEVKSFRVLQ AHGCAPQLYC 201 250 ENSTTRP00000000250/1-426 TFNNGLCYEF IQGEALDPKH VCNPAIFRLI ARQLAKIHAI HAHNGWIPKS ENSP00000266517/1-452 TFNNGLCYEF IQGEALDPKH VCNPAIFRLI ARQLAKIHAI HAHNGWIPKS ENSBTAP00000007669/1-403 TFNNGLCYEF IQGEALDPKH VCNPAIFRLI ARQLAKIHAI HAHNGWIPKS bmy_06512T0/1-318 TFNNGLCYEF IPGEALDPKH VCNPAIFRLI ARQLAKIHAI HAHNGWIPKS BACU016349/1-324 TFNNGLCYEF IQGEALDPKH VCNPAIFRLI ARQLAKIHAI HAHNGWIPKS 251 300 ENSTTRP00000000250/1-426 NVWLKMGKYF SLIPTGFADE DINKXXXXXX XXXXXXXXXX XXXXXX--LS ENSP00000266517/1-452 NLWLKMGKYF SLIPTGFADE DINKR--FLS DIPSSQILQE EMTWMKEILS ENSBTAP00000007669/1-403 NLWLKMGKYF SLIPTGFADE DINKSERFLS DIPSSQILQE EMTWMKKILS bmy_06512T0/1-318 NLWLKMGKYF SLIPTGFADE DINKRKATLD FVAX------ --------IK BACU016349/1-324 NLWLKMGKYF SLIPTGFADE DINKRKATLD FVAS------ --------IK 301 350 ENSTTRP00000000250/1-426 NLGSPVVLCH NDLLCKNIIY NEKQGDVQ-I DYEYSGYNYL AYDIGNHFNE ENSP00000266517/1-452 NLGSPVVLCH NDLLCKNIIY NEKQGDVQFI DYEYSGYNYL AYDIGNHFNE ENSBTAP00000007669/1-403 NLGSPVVLCH NDLLCKNIIY NEKQGDVQFI DYEYSGYNYL AYDIGNHFNE bmy_06512T0/1-318 KINSYVISCY --ISIKKTWL ECCSGDVQFI DYEYSGYNYL AYDIGNHFNE BACU016349/1-324 KINSYVISCY --ISIKKTWL ECCSGDVQFI DYEYSGYNYL AYDIGNHFNE 351 400 ENSTTRP00000000250/1-426 FAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000266517/1-452 FAGVSDVDYS LYPDRELQSQ WLRAYLEAYK EFKGFGTEVT EKEVEILFIQ ENSBTAP00000007669/1-403 FAGVSDVDYS LYPGRELQGQ WLRSYLEAYK EYKGFGTEVT EKEVEILFIQ bmy_06512T0/1-318 FAE------- ---------- ---------- ---------- ---------- BACU016349/1-324 FAGVSDVDYS LYPDRELQGQ WLRSYLEAYK EYKGFGSEVT EKEVEILFIQ 401 450 ENSTTRP00000000250/1-426 XXXXXXASHF FWGLWALIQA KYSTIEFDFL ---------- ---------- ENSP00000266517/1-452 VNQFALASHF FWGLWALIQA KYSTIEFDFL GYAIVRFNQY FKMKPEV--- ENSBTAP00000007669/1-403 VNQFALASHF FWGLWALIQA KYSTIDFDFL GYAVVRFNQY FKMKPEV--- bmy_06512T0/1-318 -DQLG-ASHF FWGLWALIQA KYSTIEFDFL GYAIVRFNQY FKMKPETFFC BACU016349/1-324 VNQFALASHF FWGLWALIQA KYSTIEFDFL GYAIVRFNQY FKMKPVV--- 451 500 ENSTTRP00000000250/1-426 ---------- ---------- -- ENSP00000266517/1-452 --------TA LKVPE----- -- ENSBTAP00000007669/1-403 --------TA LKVPE----- -- bmy_06512T0/1-318 KXMIQLFGFR LEIANKSGCT VG BACU016349/1-324 --------TA LKVPE----- --