KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:43 2014 Check: 00 .. Name: ENSP00000317985/1-1388 Len: 1479 Check: 7972 Weight: 1.00 Name: ENSBTAP00000007691/1-1341 Len: 1479 Check: 6748 Weight: 1.00 Name: ENSTTRP00000012495/1-1378 Len: 1479 Check: 3734 Weight: 1.00 Name: bmy_07141T0/1-1417 Len: 1479 Check: 575 Weight: 1.00 Name: BACU016772/1-1337 Len: 1479 Check: 3741 Weight: 1.00 // 1 50 ENSP00000317985/1-1388 MSRPPPTGKM PGAPETAPGD GAGASRQRKL EALIRDPRSP INVESLLDGL ENSBTAP00000007691/1-1341 ---------- ---------- ---------- ---------- -------DGL ENSTTRP00000012495/1-1378 RRVVGPGGAL AGAGGSRAAL GPEAAGPERW ERCGPGGG-- -------DGL bmy_07141T0/1-1417 MSRPPPTGKM PGAPEAVSGD GAGVSRQRKL EALIRDPRSP INVESLLDGL BACU016772/1-1337 ---------- ---------- ---------- ---------- -------DGL 51 100 ENSP00000317985/1-1388 NSLVLDLDFP ALRKNKNIDN FLNRYEKIVK KIRGLQMKAE DYDVVKVIGR ENSBTAP00000007691/1-1341 NSLVLDLDFP ALRKNKNIDN FLNRYEKIVK KIRGLQMKAE DYDVVKVIGR ENSTTRP00000012495/1-1378 NSLVLDLDFP ALRKNKNIDN FLNRYEKIVK KIRGLQMKAE DYDVVKVIGR bmy_07141T0/1-1417 NSLVLDLDFP ALRKNKNIDN FLNRYEKIVK KIRGLQMKAE DYDVVKVIGR BACU016772/1-1337 NSLVLDLDFP ALRKNKNIDN FLNRYEKIVK KIRGLQMKAE DYDVVKVIGR 101 150 ENSP00000317985/1-1388 GAFGEVQLVR HKASQKVYAM KLLSKFEMIK RSDSAFFWEE RDIMAFANSP ENSBTAP00000007691/1-1341 GAFGEVQLVR HKASQKVYAM KLLSKFEMIK RSDSAFFWEE RDIMAFANSP ENSTTRP00000012495/1-1378 GAFGEVQLXX XXXSQKVYAM KLLSKFEMIK RSDSAFFWEE RDIMAFANSP bmy_07141T0/1-1417 GAFGEVQLVR HKASQKVYAM KLLSKFEMIK RSDSAFFWEE RDIMAFANSP BACU016772/1-1337 GAFGEVQLVR HKASQKVYAM KLLSKFEMIK RSDSAFFWEE RDIMAFANSP 151 200 ENSP00000317985/1-1388 WVVQLFYAFQ DDRYLYMVME YMPGGDLVNL MSNYDVPEKW AKFYTAEVVL ENSBTAP00000007691/1-1341 WVVQLFCAFQ DDKYLYMVME YMPGGDLVNL MSNYDVPEKW AKFYTAEVVL ENSTTRP00000012495/1-1378 WVVQLFCAFQ DDKYLYMVME YMPGGDLVNL MSNYDVPEKW AKFYTAEVVL bmy_07141T0/1-1417 WVVQLFCAFQ DDKYLYMVME YMPGGDLVNL MSNYDVPEKW AKFYTAEVVL BACU016772/1-1337 WVVQLFCAFQ DDKYLYMVME YMPGGDLVNL MSNYDVPEKW AKFYTAEVVL 201 250 ENSP00000317985/1-1388 ALDAIHSMGL IHRDVKPDNM LLDKHGHLKL ADFGTCMKMD ETGMVHCDTA ENSBTAP00000007691/1-1341 ALDAIHSMGL IHRDVKPDNM LLDKHGHLKL ADFGTCMKMD ETGMVHCDTA ENSTTRP00000012495/1-1378 ALDAIHSMGL IHRDVKPDNM LLDKHGHLKL ADFGTCMKMD ETGMVHCDTA bmy_07141T0/1-1417 ALDAIHSMGL IHRDVKPDNM LLDKHGHLKL ADFGTCMKMD ETGMVHCDTA BACU016772/1-1337 ALDAIHSMGL IHRDVKPDNM LLDKHGHLKL ADFGTCMKMD ETGMVHCDTA 251 300 ENSP00000317985/1-1388 VGTPDYISPE VLKSQGGDGF YGRECDWWSV GVFLYEMLVG DTPFYADSLV ENSBTAP00000007691/1-1341 VGTPDYISPE VLKSQGGDGY YGRECDWWSV GVFLFEMLVG DTPFYADSLV ENSTTRP00000012495/1-1378 VGTPDYISPE VLKSQGGDGY YGRECDWWSV GVFLFEMLVG DTPFYADSLV bmy_07141T0/1-1417 VGTPDYISPE VLKSQGGDGY YGRECDWWSV GVFLFEMLVG DTPFYADSLV BACU016772/1-1337 VGTPDYISPE VLKSQGGDGY YGRECDWWSV GVFLFEMLVG DTPFYADSLV 301 350 ENSP00000317985/1-1388 GTYSKIMDHK NSLCFPEDAE ISKHAKNLIC AFLTDREVRL GRNGVEEIRQ ENSBTAP00000007691/1-1341 GTYSKIMDHK NSLCFPEDAE ISKHAKNLIC AFLTDREVRL GRNGVEEIKQ ENSTTRP00000012495/1-1378 GTYSKIMDHK NSLCFPEDAE ISKHAKNLIC AFLTDREVRL GRNGVEEIKQ bmy_07141T0/1-1417 GTYSKIMDHK NSLCFPEDAE ISKHAKNLIC AFLTDREVRL GRNGVEEIKQ BACU016772/1-1337 GTYSKIMDHK NSLCFPEDAE ISKHAKNLIC AFLTDREVRL GRNGVEEIKQ 351 400 ENSP00000317985/1-1388 HPFFKNDQWH WDNIRETAAP VVPELSSDID SSNFDDIEDD KGDVETFPIP ENSBTAP00000007691/1-1341 HPFFKNDQWN WDNIRETAAP VVPELSSDID SSNFDDIEDD KGDVETFPIP ENSTTRP00000012495/1-1378 HPFFKNDQWN WDNIRETAAP VVPELSSDID SSNFDDIEDD KGDVETFPIP bmy_07141T0/1-1417 HPFFKNDQWN WDNIRETAAP VVPELSSDID SSNFDDIEDD KGDVETFPIP BACU016772/1-1337 HPFFKNDQWN WDNIRETAAP VVPELSSDID SSNFDDIEDD KGDVETFPIP 401 450 ENSP00000317985/1-1388 KAFVGNQLPF IGFTYYRENL LLSDSPSCRE TDSIQSRKNE ESQEIQKKLY ENSBTAP00000007691/1-1341 KAFVGNQLPF IGFTYYRENL LLSDSPSCKE NDSIQSRKNE ESQEIQKKLY ENSTTRP00000012495/1-1378 KAFVGNQLPF IGFTYYRENL LLSDSPSCKE NDSIQSRKNE QKQ-IQKKLY bmy_07141T0/1-1417 KAFVGNQLPF IGFTYYRENL LLSDSPSCKE NDSIQSRKNE ----IQKKLY BACU016772/1-1337 KAFVGNQLPF IGFTYYRENL LLSDSPSCKE NDSIQSRKNE ----IQKKLY 451 500 ENSP00000317985/1-1388 TLEEHLSNEM QAKEELEQKC KSVNTRLEKT AKELEEEITL RKSVESALRQ ENSBTAP00000007691/1-1341 TLEEHLSTEI QAKEELEQKC KSVNTRLEKV AKELEEEITL RKNVESTLRQ ENSTTRP00000012495/1-1378 TLEEHLSSEI QAKEELEQKC KSVNTRLEKV AKELEEEITL RKNVESALRQ bmy_07141T0/1-1417 TLEEHLSSEI QAKEELEQKC KSVNTRLEKV AKELEEEITL RKNVESALRQ BACU016772/1-1337 TLEEHLSSEI QAKEELEQKC KSVNTRLEKV AKELEEEITL RKNVESALRQ 501 550 ENSP00000317985/1-1388 LEREKALLQH KNAEYQRKAD HEADKKRNLE NDVNSLKDQL EDLKKRNQNS ENSBTAP00000007691/1-1341 LEREKALLQH KNAEYQRKAD HEADKKRNLE NDVNSLKDQL EDLKKRNQNS ENSTTRP00000012495/1-1378 LEREKALLQH KNAEYQRKAD QEADKKRNLE NDVNSLKDQL EDLKKRNQNS bmy_07141T0/1-1417 LEREKALLQH KNAEYQRKAD QEADKKRNLE NDVNSLKDQL EDLKKRNQNS BACU016772/1-1337 LEREKALLQH KNAEYQRKAD QEADKKRNLE NDVNSLKDQL EDLKKRNQNS 551 600 ENSP00000317985/1-1388 QISTEKVNQL QRQLDETNAL LRTESDTAAR LRKTQAESSK QIQQLESNNR ENSBTAP00000007691/1-1341 QISTEKVNQL QRQLDETNAL LRTESDTAAR LRKTQAESSK QIQQLESNNR ENSTTRP00000012495/1-1378 QISTEKVNQL QRQLDETNAL LRTESDTAAR LRKTQAESSK QIQQLESNNR bmy_07141T0/1-1417 QISTEKVNQL QRQLDETNAL LRTESDTAAR LRKTQAESSK QIQQLESNNR BACU016772/1-1337 QISTEKVNQL QRQLDETNAL LRTESDTAAR LRKTQAESSK QIQQLESNNR 601 650 ENSP00000317985/1-1388 DLQDKNCLLE TAKLKLEKEF INLQSALESE RRDRTHGSEI INDLQGRICG ENSBTAP00000007691/1-1341 DLQDKNCLLE TAKLKLEKEF INLQSVLESE RRDRTHGSEI INDLQGRISG ENSTTRP00000012495/1-1378 DLQDKNCLLE TAKLKLEKEF INLQSVLESE RRDRTHGSEI INDLQGRISG bmy_07141T0/1-1417 DLQDKNCLLE TAKLKLEKEF INLQSVLESE RRDRTHGSEI INDLQGRISG BACU016772/1-1337 DLQDKNCLLE TAKLKLEKEF INLQSVLESE RRDRTHGSEI INDLQGRISG 651 700 ENSP00000317985/1-1388 LEEDLKNGKI LLAKVELEKR QLQERFTDLE KEKSNMEIDM TYQLKVIQQS ENSBTAP00000007691/1-1341 LEEDVKNGKI LLAKVELEKR QLQERFTDLE KEKNNMEIDM TYQLKVIQQS ENSTTRP00000012495/1-1378 LEEDLKNGKI LLAKVEIEKR QLQERFTDLE KEKNNMEIDM TYQLKVIQQS bmy_07141T0/1-1417 LEEDLKNGKI LLAKVEIEKR QLQERLTDLE KEKNNMEIDM TYQLKVIQQS BACU016772/1-1337 LEEDLKNGKI LLAKVEIEKR QLQERLTDLE KEKNNMEIDM TYQLKVIQQS 701 750 ENSP00000317985/1-1388 LEQEEAEHKA TKARLADKNK IYESIEEAKS EAMKEMEKKL LEERTLKQKV ENSBTAP00000007691/1-1341 LEQEETEHKA TKARLADKNK IYESIEEAKS EAMKEMEKKL SEERTLKQKV ENSTTRP00000012495/1-1378 LEQEEAEHKA TKARLADKNK IYESIEEAKS EAMKEMEKKL LEERTLKQKV bmy_07141T0/1-1417 LEQEEAEHKA TKARLADKNK IYESIEEAKS EAMKEMEKKL LEERTLKQKV BACU016772/1-1337 LEQEEAEHKA TKARLADKNK IYESIEEAKS EAMKEMEKKL LEERTLKQKV 751 800 ENSP00000317985/1-1388 ENLLLEAEKR CSLLDCDLKQ SQQKINELLK QKDVLNEDVR NLTLKIEQET ENSBTAP00000007691/1-1341 ENLLLEAEKR CSILDCDLKQ SQQKINELLK QKDVLNEDVR NLTLKIEQET ENSTTRP00000012495/1-1378 ENLLLEAEKR CSILDCDLKQ SQQKINELLK QKDVLNEDVR NLTLKIEQET bmy_07141T0/1-1417 ENLLLEAEKR CSILDCDLKQ SQQKINELLK QKDVLNEDVR NLTLKIEQET BACU016772/1-1337 ENLLLEAEKR CSILDCDLKQ SQQKINELLK QKDVLNEDVR NLTLKIEQET 801 850 ENSP00000317985/1-1388 QKRCLTQNDL KMQTQQVNTL KMSEKQLKQE NNHLMEMKMN LEKQNAELRK ENSBTAP00000007691/1-1341 QKRCLTQNDL KMQTQQVNTL KMSEKQLKQE NNHLLEMKMS LEKQNAELRK ENSTTRP00000012495/1-1378 QKRCLTQNDL KMQTQQVNTL KMSEKQLKQE NNHLLEMKMS LEKQNAELRK bmy_07141T0/1-1417 QKRCLTQNDL KMQTQQVNTL KMSEKQLKQE NNHLLEMKMS LEKQNAELRK BACU016772/1-1337 QKRCLTQNDL KMQTQQVNTL KMSEKQLKQE NNHLLEMKMS LEKQNAELRK 851 900 ENSP00000317985/1-1388 ERQDADGQMK ELQDQLEAEQ YFSTLYKTQV RELKEECEEK TKLGKELQQK ENSBTAP00000007691/1-1341 ERQDADGQMK ELQDQLEAEQ YFSTLYKTQV RELKEECEEK TKLCKELQQK ENSTTRP00000012495/1-1378 ERQDADGQMK ELQDQLEAEQ YFSTLYKTQV RELKEECEEK TKLCKELQQK bmy_07141T0/1-1417 ---------- ---------- ---------- ---------- ---------- BACU016772/1-1337 ERQDADGQMK ELQDQLEAEQ YFSTLYKTQV RELKEECEEK TKLCKELQQK 901 950 ENSP00000317985/1-1388 KQELQDERDS LAAQLEITLT KADSEQLARS IAEEQYSDLE KEKIMKELEI ENSBTAP00000007691/1-1341 KQELQDERDS LAAQLEITLT KADSEQLARS IAEEQYSDLE KEKIMKELEI ENSTTRP00000012495/1-1378 KQELQDERDS LAAQLEITLT KADSEQLARS IAEEQYSDLE KEKIMKELEI bmy_07141T0/1-1417 --------DS LAAQLEITLT KADSEQLARS IAEEQYSDLE KEKIMKELEI BACU016772/1-1337 KQELQDERDS LAAQLEITLT KADSEQLARS IAEEQYSDLE KEKIMKELEI 951 1000 ENSP00000317985/1-1388 KEMMARHKQE LTEKDATIAS LEETNRTLTS DVANLANEKE ELNNKLKDVQ ENSBTAP00000007691/1-1341 KEMMARHKQE LTEKDATIAS LEETNRTLTS DVANLANEKE ELNNKLKEAQ ENSTTRP00000012495/1-1378 KEMMARHKQE LTEKDATIAS LEETNRTLTS DVANLANEKE ELNNKWKDAQ bmy_07141T0/1-1417 KEMMARHKQE LTEKDATIAS LEETNRTLTS DVANLANEKE ELNNKWKDAQ BACU016772/1-1337 KEMMARHKQE LTEKDATIAS LEETNRTLTS DVANLANEKE ELNNKWKDAQ 1001 1050 ENSP00000317985/1-1388 EQLSRLKDEE ISAAAIKAQF EKQLLTERTL KTQAVNKLAE IMNRKEPVKR ENSBTAP00000007691/1-1341 EQLSRLKDEE ISAAAIKAQF EKQLLTERTL KTQAVNKLAE IMNRKEPVKR ENSTTRP00000012495/1-1378 EQLSRLKDEE ISAAAIKAQF EKQLLTERTL KTQAVNKLAE IMNRKEPVKR bmy_07141T0/1-1417 EQLSRLKDEE ISAAAIKAQF EKQLLTERTL KTQAVNKLAE IMNRKEPVKR BACU016772/1-1337 EQLSRLKDEE ISAAAIKAQF EKQLLTERTL KTQAVNKLAE IMNRKEPVKR 1051 1100 ENSP00000317985/1-1388 GNDTDVRRKE KENRKLHMEL KSEREKLTQQ MIKYQKELNE MQAQIAEESQ ENSBTAP00000007691/1-1341 GNDTDVRRKE KENRKLHMEL KSEREKLTQQ MIKYQKELNE MQAQIAEESQ ENSTTRP00000012495/1-1378 GSDTDVRRKE KENRKLHMEL KSEREKLTQQ MIKYQKELNE MQAQIAEESQ bmy_07141T0/1-1417 GSDTDVRRKE KENRKLHMEL KSEREKLTQQ MIKYQKELNE MQAQIAEESQ BACU016772/1-1337 GSDTDVRRKE KENRKLHMEL KSEREKLTQQ MIKYQKELNE MQAQIAEESQ 1101 1150 ENSP00000317985/1-1388 IRIELQMTLD SKDSDIEQLR SQLQALHIGL DSSSIGSGPG DAEADDGFP- ENSBTAP00000007691/1-1341 IRIELQMTLD SKDSDIEQLR SQLQALHIGL DSSSIGSGPG DTEADDGFP- ENSTTRP00000012495/1-1378 IRIELQMTLD SKDSDIEQLR SQLQALHIGL DSSSIGSGPG DAEADDGFP- bmy_07141T0/1-1417 IRIELQMTLD SKDSDIEQLR SQLQALHIGL DSSSIGSGPG DAEADDGFPV BACU016772/1-1337 IRIELQMTLD SKDSDIEQLR SQLQALHIGL DSSSIGSGPG DAEADDGFP- 1151 1200 ENSP00000317985/1-1388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007691/1-1341 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012495/1-1378 ---------- ---------- ---------- ---------- ---------- bmy_07141T0/1-1417 HITQSHTMES MSFTYQRSST SLNIATKPSS SHMLLDSDSD SEEESVPYLP BACU016772/1-1337 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000317985/1-1388 --------ES RLEGWLSLPV RNNTKKFGWV KKYVIVSSKK ILFYDSEQDK ENSBTAP00000007691/1-1341 --------ES RLEGWLSLPV RNNTKKFGWV KKYVIVSSKK ILFYDSEQDK ENSTTRP00000012495/1-1378 --------ES RLEGWLSLPV RNNTKKFGWV KKYVIVSSKK ILFYDSEQDK bmy_07141T0/1-1417 ISSEPNGTES RLEGWLSLPV RNNTKKFGWV KKYVIVSSKK ILFYDSEQDK BACU016772/1-1337 --------ES RLEGWLSLPV RNNTKKFGWV KKYVIVSSKK ILFYDSEQDK 1251 1300 ENSP00000317985/1-1388 EQSNPYMVLD IDKLFHVRPV TQTDVYRADA KEIPRIFQIL YANEGESKKE ENSBTAP00000007691/1-1341 EQSNPYMVLD IDKLFHVRPV TQTDVYRADA KEIPRIFQIL YANEGESKKE ENSTTRP00000012495/1-1378 EQSNPYMVLD IDKLFHVRPV TQTDVYRADA KEIPRIFQIL YANEGESKKE bmy_07141T0/1-1417 EQSNPYMVLD IDKLFHVRPV TQTDVYRADA KEIPRIFQIL YANEGESKKE BACU016772/1-1337 EQSNPYMVLD IDKLFHVRPV TQTDVYRADA KEIPRIFQIL YANEGESKKE 1301 1350 ENSP00000317985/1-1388 QEFPVEPVGE KSNYICHKGH EFIPTLYHFP TNCEACMKPL WHMFKPPPAL ENSBTAP00000007691/1-1341 QEFPVEPVGE KSNYICHKGH EFIPTLYHFP TNCEACMKPL WHMFKPPPAL ENSTTRP00000012495/1-1378 QEFPVEPVGE KSNYICHKGH EFIPTLYHFP TNCEACMKPL WHMFKPPPAL bmy_07141T0/1-1417 QEFPVEPVGE KSNYICHKGH EFIPTLYHFP TNCEACMKPL WHMFKPPPAL BACU016772/1-1337 QEFPVEPVGE KSNYICHKGH EFIPTLYHFP TNCEACMKPL WHMFKPPPAL 1351 1400 ENSP00000317985/1-1388 ECRRCHIKCH KDHMDKKEEI IAPCKVYYDI STAKNLLLLA NSTEEQQKWV ENSBTAP00000007691/1-1341 ECRRCHIKCH KDHMDKKEEI IAPCKVYYDI SSAKNLLLLA NSTEEQQKWV ENSTTRP00000012495/1-1378 ECRRCHIKCH KDHMDKKEEI IAPCKVYYDI SSAKNLLLLA NSTEEQQKWV bmy_07141T0/1-1417 ECRRCHIKCH KDHMDKKEEI IAPCKVYYDI SSAKNLLLLA NSTEEQQKWV BACU016772/1-1337 ECRRCHIKCH KDHMDKKEEI IAPCKVYYDI SSAKNLLLLA NSTEEQQKWV 1401 1450 ENSP00000317985/1-1388 SRLVKKIPKK PPAPDPFARS SPRTSMKIQQ NQSIRRPSRQ LAPNKPS--- ENSBTAP00000007691/1-1341 SRLVKKIPKK PPAPDPFARS SPRTSMKIQQ NQSIRRPSRQ LAPNKPS--- ENSTTRP00000012495/1-1378 SRLVKKIPKK PPAPDPFARS SPRTSMKIQQ NQSIRRPSRQ LAPNKPS--- bmy_07141T0/1-1417 SRLVKKIPKK PPAPDPFARS SPRTSMKIQQ NQSIRRPSRQ LAPNKPRNAI BACU016772/1-1337 SRLVKKIPKK PPAPDPFARS SPRTSMKIQQ NQSIRRPSRQ LAPNKPR--- 1451 1500 ENSP00000317985/1-1388 ---------- ---------- --------- ENSBTAP00000007691/1-1341 ---------- ---------- --------- ENSTTRP00000012495/1-1378 ---------- ---------- --------- bmy_07141T0/1-1417 LEECFLRNFE LKYYAGKLTA FYECSHYSR BACU016772/1-1337 ---------- ---------- ---------