KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:44 2014 Check: 00 .. Name: ENSTTRP00000000694/1-511 Len: 599 Check: 3433 Weight: 1.00 Name: bmy_00426T0/1-526 Len: 599 Check: 7202 Weight: 1.00 Name: ENSBTAP00000007699/1-599 Len: 599 Check: 1980 Weight: 1.00 Name: ENSP00000287766/1-599 Len: 599 Check: 1327 Weight: 1.00 Name: BACU015177/1-555 Len: 599 Check: 3768 Weight: 1.00 // 1 50 ENSTTRP00000000694/1-511 ---------- ---------- ---------- ---------- ---------- bmy_00426T0/1-526 MATNGSKVAD GQISTEVSEV PVANDKPKTL VVKVQKKTAD LPDRDTWKGR ENSBTAP00000007699/1-599 MATDGSKVAD GQISTEVSEV PVANDKPKTL VVKVQKKAAD LPDRDTWKGR ENSP00000287766/1-599 MATNGSKVAD GQISTEVSEA PVANDKPKTL VVKVQKKAAD LPDRDTWKGR BACU015177/1-555 MATNGSKVAD GQISTEVSEV PVANDKPKTL VVKVQKKTAD LPDRDTWKGR 51 100 ENSTTRP00000000694/1-511 ---------- ---------- ---------- AFLIPYFLTL IFAGVPLFLL bmy_00426T0/1-526 FDFLMSCVGY AIGLGNVWRF PYLCGKNGGG AFLIPYFLTL IFAGVPLFLL ENSBTAP00000007699/1-599 FDFLMSCVGY AIGLGNVWRF PYLCGKNGGG AFLIPYFLTL IFAGVPLFLL ENSP00000287766/1-599 FDFLMSCVGY AIGLGNVWRF PYLCGKNGGG AFLIPYFLTL IFAGVPLFLL BACU015177/1-555 FDFLMSCVGY AIGLGNVWRF PYLCGKNGG- ---------- ---------- 101 150 ENSTTRP00000000694/1-511 ECSLGQYTSI GGLGVWKLAP MFKGVGLAAA VLSFWLNIYY IVIISWAIYY bmy_00426T0/1-526 ECSLGQYTSI GGLGVWKLAP MFKEEDPVQR PRTH------ ---VSLP--- ENSBTAP00000007699/1-599 ECSLGQYTSI GGLGVWKLAP MFKGVGLAAA VLSFWLNIYY IVIISWAIYY ENSP00000287766/1-599 ECSLGQYTSI GGLGVWKLAP MFKGVGLAAA VLSFWLNIYY IVIISWAIYY BACU015177/1-555 ---------- ---------- ---GVGLAAA VLSFWLNIYY IVIISWAIYY 151 200 ENSTTRP00000000694/1-511 LYNSFTTTLP WKQCDNPWNT DRCFSNYSIV NTSTMTSAVV EFWERNMHQM bmy_00426T0/1-526 -----CPTLP WKQCDNPWNT DRCFSNYSIV NTTSMTSAVV EFWERNMHQM ENSBTAP00000007699/1-599 LYNSFTTTLP WKQCGNSWNT DRCFSNYSAL NTTNMTSAVV EFWERNMHQM ENSP00000287766/1-599 LYNSFTTTLP WKQCDNPWNT DRCFSNYSMV NTTNMTSAVV EFWERNMHQM BACU015177/1-555 LYNSFTTTLP WKQCDNPWNT DRCFSNYSIV NTTTMTSAVV EFWERNMHQM 201 250 ENSTTRP00000000694/1-511 TDGLDKPGQI RWPLAITLAI AWILVYFCIW KGVGWTGKVV YFSATYPYIM bmy_00426T0/1-526 TDGLDKPGQI RWPLAITLAI AWILVYFCIW KGVGWTGKVV YFSATYPYIM ENSBTAP00000007699/1-599 TDGLDKPGQI RWPLAITLAI AWILVYFCIW KGVGWTGKVV YFSATYPYIM ENSP00000287766/1-599 TDGLDKPGQI RWPLAITLAI AWILVYFCIW KGVGWTGKVV YFSATYPYIM BACU015177/1-555 TDGLDKPGQI RWPLAITLAI AWILVYFCIW KGVGWTGKVV YFSATYPYIM 251 300 ENSTTRP00000000694/1-511 LIILFFRGVT LPGAKEGILF YITPNFRKLS DSEVWLDAAT QIFFSYGLGL bmy_00426T0/1-526 LIILFFRGVT LPGAKEGILF YITPNFRKLS DSEVWLDAAT QIFFSYGLGL ENSBTAP00000007699/1-599 LIILFFRGVT LPGAKEGILF YITPNFRKLS DSEVWLDAAT QIFFSYGLGL ENSP00000287766/1-599 LIILFFRGVT LPGAKEGILF YITPNFRKLS DSEVWLDAAT QIFFSYGLGL BACU015177/1-555 LIILFFRGVT LPGAKEGILF YITPNFRKLS DSEVWLDAAT QIFFSYGLGL 301 350 ENSTTRP00000000694/1-511 GSLIALGSYN SFHNNVYRDS IIVCCINSCT SMFAGFVIFS IVGFMAHVTK bmy_00426T0/1-526 GSLIALGSYN SFHNNVYRDS IIVCCINSCT SMFAGFVIFS IVGFMAHVTK ENSBTAP00000007699/1-599 GSLIALGSYN SFHNNVYRDS IIVCCINSCT SMFAGFVIFS IVGFMAHVTK ENSP00000287766/1-599 GSLIALGSYN SFHNNVYRDS IIVCCINSCT SMFAGFVIFS IVGFMAHVTK BACU015177/1-555 GSLIALGSYN SFHNNVYRDS IIVCCINSCT SMFAGFVIFS IVGFMAHVTK 351 400 ENSTTRP00000000694/1-511 RSIADVAASG PGLAFLAYPE AVTQLPISPL WAILFFSMLL MLG-DSQXXX bmy_00426T0/1-526 RSIADVAASG PGLAFLAYPE AVTQLPISPL WAILFFSMLL MLGIDSQFCT ENSBTAP00000007699/1-599 RSIADVAASG PGLAFLAYPE AVTQLPISPL WAILFFSMLL MLGIDSQFCT ENSP00000287766/1-599 RSIADVAASG PGLAFLAYPE AVTQLPISPL WAILFFSMLL MLGIDSQFCT BACU015177/1-555 RSIADVAASG PGLAFLAYPE AVTQLPISPL WAILFFSMLL MLGIDSQFCT 401 450 ENSTTRP00000000694/1-511 XXXXXXXXXX EY---LLNRE ---LIAVCIV SY-IGLSNIT QGGIYVFKLF bmy_00426T0/1-526 VEGFITALVD EYPRLLRNRR ELFIAAVCIV SYLIGLSNIT QGGIYVFKLF ENSBTAP00000007699/1-599 VEGFITALVD EYPRLLRNRR ELFIAAVCLV SYLIGLSNIT QGGIYVFKLF ENSP00000287766/1-599 VEGFITALVD EYPRLLRNRR ELFIAAVCII SYLIGLSNIT QGGIYVFKLF BACU015177/1-555 VEGFITALVD EYPRLLRNRR ELFIAAVCIV SYLIGLSNIT QGGIYVFKLF 451 500 ENSTTRP00000000694/1-511 DYYSASGMSL LFLVFFECVS ISWFYGVNRF YDNIQEMVGS RPCIWWKLCW bmy_00426T0/1-526 DYYSASGMSL LFLVFFECVS ISWFYGVNRF YDNIQEMVGS RPCIWWKLCW ENSBTAP00000007699/1-599 DYYSASGMSL LFLVFFECVS ISWFYGVNRF YDNIQEMVGS RPCIWWKLCW ENSP00000287766/1-599 DYYSASGMSL LFLVFFECVS ISWFYGVNRF YDNIQEMVGS RPCIWWKLCW BACU015177/1-555 DYYSASGMSL LFLVFFECVS ISWFYGVNRF YDNIQEMVGS RPCIWWKLCW 501 550 ENSTTRP00000000694/1-511 SFFTPIIVAG VFIFSAVQMT PLTMGRYVFP KWGQGVGWLM ALSSMVLIPG bmy_00426T0/1-526 SFFTPIIVA- ---------- ---------- ---------- ---------- ENSBTAP00000007699/1-599 SFFTPIIVAG VFIFSAVQMT PLTMGSYVFP KWGQGVGWLM ALSSMVLIPG ENSP00000287766/1-599 SFFTPIIVAG VFIFSAVQMT PLTMGNYVFP KWGQGVGWLM ALSSMVLIPG BACU015177/1-555 SFFTPIIVAG VFIFSAVQMT PLTMGSYVFP KWGQGVGWLM ALSSMVLIPG 551 600 ENSTTRP00000000694/1-511 YMAYMFLTLK GSLKQRIQVM IQPSEDIVRP ENGPEQPQAS GSASKEAYI bmy_00426T0/1-526 ---------- -----RIQVM IQPSEDIVRP ENGPEQPQAS GSASKEAYI ENSBTAP00000007699/1-599 YMAYMFLTLK GSLKQRIQVM IQPSEDIVRP ENGPEQSQAS GSASKEAYI ENSP00000287766/1-599 YMAYMFLTLK GSLKQRIQVM VQPSEDIVRP ENGPEQPQAG SSTSKEAYI BACU015177/1-555 YMAYMFLTLK GSLKQRIQVM IQPSEDIVRP ENGPEQPQAS SSASKEAYI