KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:49 2014 Check: 00 .. Name: BACU013697/1-71 Len: 380 Check: 5759 Weight: 1.00 Name: ENSP00000385021/1-380 Len: 380 Check: 2298 Weight: 1.00 Name: ENSBTAP00000007713/1-374 Len: 380 Check: 9819 Weight: 1.00 Name: bmy_05667T0/1-206 Len: 380 Check: 6508 Weight: 1.00 Name: ENSTTRP00000001031/1-375 Len: 380 Check: 4793 Weight: 1.00 // 1 50 BACU013697/1-71 MAETEASLLR QFPLLLPQNR AKTVYEGFI- ---------- ---------- ENSP00000385021/1-380 MAVTEASLLR QCPLLLPQNR SKTVYEGFIS AQGRDFHLRI VLPEDLQLKN ENSBTAP00000007713/1-374 MAETEATLLR QFPLFLPQNR SKTVYEGFIS AQGRDFHLRL LLPKDLQLRN bmy_05667T0/1-206 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001031/1-375 MAETEASLLR QFPLLLPQNR AKTVYEGFIS AHXXXXXXXX XXXXXXXXXX 51 100 BACU013697/1-71 ---------- ---------- ---------- ---------- ---------- ENSP00000385021/1-380 ARLLCSWQLR TILSGYHRIV QQRMQHSPDL MSFMMELKML LEVALKNRQE ENSBTAP00000007713/1-374 ARLLCSWQLK TALNGYHHIV QQRMQQSPDL VSFMMELKMV LEAALKNKKE bmy_05667T0/1-206 -------MMR SV-------- ---------- ---------- ---------- ENSTTRP00000001031/1-375 XXLLCSWQLK AILNGYHHVV QQXXXXXXXX XXXXXXXXXX XEVALKNKKE 101 150 BACU013697/1-71 ---------- ---------- ---------- ---------- ---------- ENSP00000385021/1-380 LYALPPPPQF YSSLIEEIGT LGWDKLVYAD TCFSTIKLKA EDASGREHLI ENSBTAP00000007713/1-374 PYVLPSPPKF YSSLIGEIRT LGWDKLVFVD PCFSTIKLKA -DVSGREHLI bmy_05667T0/1-206 ---------- ---------- --WSHPI--- ---------- ---------- ENSTTRP00000001031/1-375 LYVLPPPPQF YSSLIEEIGT LGWDKLVYVD TCFSTIKLKA EDASGREHLI 151 200 BACU013697/1-71 ---------- ---------- ---------- ---------- ---------- ENSP00000385021/1-380 TLKLKAKYPA ESPDYFVDFP VPFCASWTPQ VNSPQSSLIS IYSQFLAAIE ENSBTAP00000007713/1-374 TVKLKAKYPA ESPDCVVDFP VPFSVSWT-- ---PQSSLIS IYTQFLAALE bmy_05667T0/1-206 ---------- ---------- ---------- ----MSSLIS IHSQFLAALE ENSTTRP00000001031/1-375 TVKLKAKYPA ESPDCIVDFP VSFSVSWT-- ---PQSSLIS IHSQFLAALE 201 250 BACU013697/1-71 ---------- ---------- --------SA QKERFGGKPG FRSLPGPGYP ENSP00000385021/1-380 SLKAFWDVMD EIDEKTWVLE PEKPPRSATA RRIALGNNVS INIEVDPRHP ENSBTAP00000007713/1-374 SLKTFWDVMD EIDEKTWVLE PEKPTRSATA RRIVLGNNVS INIEVDPRHP bmy_05667T0/1-206 SLKAFWDVMD EIDEKTWVLE PEKPTRSATA RRIALGNNAS INIEVDPRHP ENSTTRP00000001031/1-375 SLKAFWDVMD EIDEKTWVLE PEKPTRSATA RRIALGTNAS INIEVDPRHP 251 300 BACU013697/1-71 ISSGWRCFVG ---------- ---------- ---------- ---------- ENSP00000385021/1-380 TMLPECFFLG ADHVVKPLGI KLSRNIHLWD PENSVLQNLK DVLEIDFPAR ENSBTAP00000007713/1-374 TMLPECCFLG ADHVVKPLGI RLSRNIHLWD PENSLLQNLK DVLEIDFPAR bmy_05667T0/1-206 TMLPECCFLG ADHVVKPLGI RLSRNIHLWD PENSLLQNLK DVLEIDFPAR ENSTTRP00000001031/1-375 TMLPECCFLG ADHVVKPLGI RLSRNIHLWD PENSLLQNLK YVLEIDFPAH 301 350 BACU013697/1-71 ---------- --------NL DNRIN----- ---------- -----YLR-- ENSP00000385021/1-380 AILEKSDFTM DCGICYAYQL DGTIPDQVCD NSQCGQPFHQ ICLYEWLRGL ENSBTAP00000007713/1-374 AILEKSDFSM DCGICYAYQL DGAIPDQVCD NSQCGQSFHY ICLYEWLRGL bmy_05667T0/1-206 AILEXSDFSM DCGICYAYQL DGAIPDQVCD NSRCGQPFHQ ICLYEWLRGL ENSTTRP00000001031/1-375 AILEKSDFSM DCGICYAYQL DGAIPDQVCD NSQCGQPFHQ ICLYEWLRGL 351 400 BACU013697/1-71 ---------- ---------- ---------- ENSP00000385021/1-380 LTSRQSFNII FGECPYCSKP ITLKMSGRKH ENSBTAP00000007713/1-374 LTSRQSFNII FGECPYCSKP ITLKMSGRKA bmy_05667T0/1-206 LTSRQSFNVI FGECPYCSKP LTLKMSGRKA ENSTTRP00000001031/1-375 LTSRQSFNVI FGECPYCSKP LTLKMSGRKA