KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:50 2014 Check: 00 .. Name: ENSP00000402527/1-1112 Len: 1199 Check: 2340 Weight: 1.00 Name: ENSTTRP00000015132/1-1110 Len: 1199 Check: 7401 Weight: 1.00 Name: ENSBTAP00000007718/1-1164 Len: 1199 Check: 9417 Weight: 1.00 Name: bmy_07883T0/1-934 Len: 1199 Check: 8878 Weight: 1.00 Name: BACU002040/1-1139 Len: 1199 Check: 1607 Weight: 1.00 // 1 50 ENSP00000402527/1-1112 MAAGKSGGSA GEITFLE--- ---------- ---------- ---------- ENSTTRP00000015132/1-1110 MAAGKSDGSA GEITFLE--- ---------- ---------- ---------- ENSBTAP00000007718/1-1164 MAAGKSDGSA GEITFLEGMR ADCARLLFGV CEKFQVAKRL GEIGGQTTLG bmy_07883T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU002040/1-1139 ---MRRDSIF WHLNFFLQFR ---------- ---------- ---------- 51 100 ENSP00000402527/1-1112 ---------- ------ALAR SESKRDGGFK NNWSFDHEEE SEGDTDKDGT ENSTTRP00000015132/1-1110 ---------- ------ALAR SESKRDRGFK RNWSFDHGEE SEGDTDKDEA ENSBTAP00000007718/1-1164 GETSINEYLS EFVFISALAR SESKRDGGFK NNWSFDHGEE SEGDTDKDEA bmy_07883T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU002040/1-1139 ---------- ------ALAR SESKRDGGFK RNWSFDHGEE SEGDTDKDEA 101 150 ENSP00000402527/1-1112 NLLSVDEDED SETSKGKKLN RRSEIVANSS GEFILKTYVR RNKSESFKTL ENSTTRP00000015132/1-1110 NLLSVDEDED SETSKGKKLN RQSEIVATSS GD-PWKTCTK RNRTESLKPL ENSBTAP00000007718/1-1164 NLLSVDEDED SETSKGKKLN RQSEIVATSS VD-PWKTCAR RNKTESLKPL bmy_07883T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU002040/1-1139 NLLSVDEDED SETSKGKKLN RPSEIVATSP AA-PWRTCTK RSRSESLKPL 151 200 ENSP00000402527/1-1112 KGNPIGLNML SNNKKLSENT QNTSLCSGTV VHGRRFHHAH AQIPVVKTAA ENSTTRP00000015132/1-1110 KGNPLGLNML SSTKKLSANT QNASLCSGTV ---RRFPHTN AQIAIVKTAA ENSBTAP00000007718/1-1164 KGNAIGLNML SNNKKLSENT QNTSLCSGSV ---RRFPHAN AQIAIVKTAA bmy_07883T0/1-934 ---------- ---------- ---------- ---------- ---------- BACU002040/1-1139 KGNPIGLHML NNNKKSSENT QNASLCSGTV ---RRFPQAN AQIAMVKTAA 201 250 ENSP00000402527/1-1112 QSSLDRKERK EYPPHVQKVE INPVRLSRLQ GVERIMKKTE ESESQVEPEI ENSTTRP00000015132/1-1110 QRLLSNHILK EYPPHVQKFE SNPVRLSRPQ GVDRIMKKTE ESESHLDSEI ENSBTAP00000007718/1-1164 QSSLDQKERK EYPPHVQKFE SNPVRLSRPQ GVDRIMKKTE ESESHLESEI bmy_07883T0/1-934 ---------- ---------- ---------- -----MKKTE ESESHLESEI BACU002040/1-1139 QSSLDQKERK EYPPHVQKFE SNPVRLSRPQ GGDRIMKKTE ESESHPESEI 251 300 ENSP00000402527/1-1112 KRKVQQKRHC STYQPTPP-L SPASKKCLTH LE-------- ---------- ENSTTRP00000015132/1-1110 KRKVAQKRHS STCQSTPHSL SPASKKCLTD LE-------- ---------- ENSBTAP00000007718/1-1164 KRKVAQKRHS STYQSTPPSL SPASKKCLTD LE-------- ---------- bmy_07883T0/1-934 KRKVAQKRHS STDQSTPYSL SPASKKCLTD LEVSKQCGYC PKCGKEKENQ BACU002040/1-1139 KRKVAQKRHS STDQSTPYSL SSATKKCLTD LEVSKQFGYC PKCGKEKENQ 301 350 ENSP00000402527/1-1112 ---------- --DLQRNCRQ AITLNESTGP LLRTSIHQNS GGQKSQNTGL ENSTTRP00000015132/1-1110 ---------- --DLQRNCRQ AVTLNESAGL -LRTSIHQNS GGQKSQNTTL ENSBTAP00000007718/1-1164 ---------- --DLQRNCRQ AITLNDSAGL SLRTSIHQNS GGQKSQNTIL bmy_07883T0/1-934 TKCQSCGIPF PKDLQRNCRQ AVTLNEPTGL -LRTSIHQNS GGQKSQNTAL BACU002040/1-1139 TKCQSCGIPF PKDLQRNSRQ AVTLNEPTGL -LRTSIHQNS GRRKSQNTAL 351 400 ENSP00000402527/1-1112 TTKKFYGNNV EKVPIDIIVN CDDSKHTYLQ TNGKVILPGA KIPKITNLKE ENSTTRP00000015132/1-1110 PAKKFYGNSV GKVPVDIIVS CDDSGQNNLQ TNGKVILPRA KVAKITSLKE ENSBTAP00000007718/1-1164 PAKKFYGNSV GKIPIDIIVS CDESGQNYLH TNGKVILSRA KVAKITNLKE bmy_07883T0/1-934 PAKKFYGNSV GKVPIDIIVN CDDSGQNYLQ TNGKVILPRA EVAKITNLKE BACU002040/1-1139 PAKKFYGNSV GKVPVDIIVN CDDSGQNYLQ TNGKVILPKT EVAKITNPKE 401 450 ENSP00000402527/1-1112 RKTSLSDLND PIILSS---D DDDDNDRTNR RESISPQPAD SACSSPAPST ENSTTRP00000015132/1-1110 RKTSLSDLND PIILSS--DD DDDDSDRTNR RESISPQPAD SACSSPAPST ENSBTAP00000007718/1-1164 RKTSLSDLND PIILSSDDDD DDDDNDRTNR RESISPQPAD SACSSPAPST bmy_07883T0/1-934 RKTSLSDLND PIILSS-DDD DDDDSDRTNR RESISPQPAD SACSSPVPST BACU002040/1-1139 RKTSLSDLND PIILSS-DDD DDDDGERTNR RESISPQPAD SACSSPAPST 451 500 ENSP00000402527/1-1112 GKVEAALNEN TCRAERELRS IPEDSELNTV TLPRKARMKD QFGNSIINTP ENSTTRP00000015132/1-1110 GKVEAALNEN TCRVEHELRS IPADSELNTV TXXXXXXXXX XFGNSIINIP ENSBTAP00000007718/1-1164 GKVEAALNEN TCRIEHELRS IPADSELNTV ILPRKARMKD QFGNSIITTP bmy_07883T0/1-934 GKVEAALNEN TCRVEHELRS IPARSELNTV TLPRKARMRD QFGNSIINIP BACU002040/1-1139 GKVEAALNEN TCRVEHELRR IPARSELNTV TLPRKARMRD QFGNSIINVP 501 550 ENSP00000402527/1-1112 LKRRKVFSQE P-PDALALSC QSSFDSVILN CRSIRVGTLF RLLIEPVIFC ENSTTRP00000015132/1-1110 LKRRKVISQE TLVDPVSLSC QSSFDSVILN CRSIRVGTLC RLLIEPVIFC ENSBTAP00000007718/1-1164 LKRRKVISQE TLVAPVSLSC QSSSDTVVLN CRSIRVGTLF RLLIEPVIFC bmy_07883T0/1-934 LKRRKVISQE TLVDPVSLSC QSSFDSVILN CRSIRVGTLC RLLIEPVIFS BACU002040/1-1139 LKRRKMISQE TLVDPVSLSY QSSFGSVILN CRSIRVGTLC RLLIEPVIFS 551 600 ENSP00000402527/1-1112 LDFIKIQLDE PDHDPVEIIL NTSDLTKCEW CNVRKLPVVF LQAIPAVYQK ENSTTRP00000015132/1-1110 LDFIKIQLEE PEEEPVGITL CTSDLAKCEW CNVRRLXXXX XXXXXXXXXX ENSBTAP00000007718/1-1164 LDFIKIQLEE PENDPVGITL NTSDLTKCEW CSVRKLPVVF LQTKPAVYQK bmy_07883T0/1-934 LDFIKIQLEE PEKEPVGITL NTSDLTKCEW CNVRKLPVVF LQTTAAVYQK BACU002040/1-1139 LDFIKIQLEE PEKEPVGITL NTSDLTKCEW CSVRKLPVLF LQTTAAVYQK 601 650 ENSP00000402527/1-1112 LSIQLQMNKE DKVWNDCKGV NKLTNLEEQY IILIFQNGLD PPANMVFESI ENSTTRP00000015132/1-1110 XXXXXXXXXX XXXXXXXXXX XXXXXLEEQY IILIFQNGLD PQTNMVFENI ENSBTAP00000007718/1-1164 LSMQLQMNME DKVWNDCKGV NKLTNLEEQY IILIFQNGLD PQANMLFENI bmy_07883T0/1-934 LSMQLQMDME DKVRKDCKGI ----NLEEQY IILIFQNGLD PQANMVFENI BACU002040/1-1139 LSVQLQMNTE DEVRKDCKGM NKLTNLEEQY IILIFQHGLD PQANMVFENI 651 700 ENSP00000402527/1-1112 INEIGIKNNI SNFFAKIPFE EANGRLVACT RTYEESIKGS CGQKENKIKT ENSTTRP00000015132/1-1110 ITDIGIKNNV SNFFAKIPFD EANSRLVACT RTCEESSKGS CVQKENKIKN ENSBTAP00000007718/1-1164 ITDIGVKNNV SNFFVKIPFD EANSRLVACT RTYEESIKGS CVQKENKIKN bmy_07883T0/1-934 ITDIGIKNNV SDFFAKIPFD EANSRLVACT RTCEESSKGS CVQKENKIKN BACU002040/1-1139 IIDIGIKNNV SDFFAKIPFD EANSRLVACT RTCEESSKGS CVQKENKIKN 701 750 ENSP00000402527/1-1112 VSFESKIQLR SKQEFQFFDE EEETGENHTI FIGPVEKLIV YPPPPAKGGI ENSTTRP00000015132/1-1110 VSLESKIQLK NKHEFQFFDD EE-TGESHTI FMGPVEKLIV YPPPPAKGGI ENSBTAP00000007718/1-1164 VALESKIQLK NKQEFQFFDD EEETGESHTI FMGPVEKLIV YPPPPAKGGI bmy_07883T0/1-934 VSLESKIQLK NKQEFQFFDD EEATGESHTI FMGPVEKLMV YPPPPAKGGI BACU002040/1-1139 VSLESKLQLK NKQEFQFFDD EEATGESHTI FMGPIEKLMV YPPPPAKGGI 751 800 ENSP00000402527/1-1112 SVTNEDLHCL NEGEFLNDVI IDFYLKYLVL EKLKKEDADR IHIFSSFFYK ENSTTRP00000015132/1-1110 SVTNEDLHCL SEGEFLNDVI IDFYLKYLVL EKLKKEEADR IHVFSSFFYK ENSBTAP00000007718/1-1164 SVTNEDLHCL SEGEFLNDVI IDFYLKYLVL EKLKKEEADR IHIFSSFFYK bmy_07883T0/1-934 SVTNEDLHCL SEGEFLNDVI IDFYLKYLVL EKLKKEEADR IHVFSSFFYK BACU002040/1-1139 SVTNEDLHCL SEGEFLNDVI IDFYLKYLVL EKLKKEEADR IHVFSSFFYK 801 850 ENSP00000402527/1-1112 RLNQRERRN- HETTNLSIQQ KRHGRVKTWT RHVDIFEKDF IFVPLNEAAH ENSTTRP00000015132/1-1110 RLNQRERRNL HETTNLSIQQ KRHGRVKTWT RHVDIFEKDF IFVPLNEAAH ENSBTAP00000007718/1-1164 RLNQRERRNL HETTNLSIQQ KRHGRVKTWT RHVDIFEKDF IFVPLNEAAH bmy_07883T0/1-934 RLNQRERRNL PETTNLSIQQ KRHGRVKTWT RHVDIFEKDF IFVPLNEAAH BACU002040/1-1139 RLNQRERRNL PETTNLSIQQ KRHGRVKTWT RHVDIFEKDF IFVPLNEAAH 851 900 ENSP00000402527/1-1112 WFLAVVCFPG LEKPKYEPNP HYHENAVIQK CSTVEDSCIS S-SASEMESC ENSTTRP00000015132/1-1110 WFLAVVCFPG LEKPKYEPNP HYHENTVTQK CSTVEDSCIS SPSASEMDSY ENSBTAP00000007718/1-1164 WFLAVVCFPG LEKPKYEPNP HYHENTVTQK SSPVEDSCIS SPSASEIDRC bmy_07883T0/1-934 WFLAVVCFPG LEKPKYEPNP HYHENTVTQK CSTVEDSCIS SPSASEMDSC BACU002040/1-1139 WFLAVVCFPG LEKPKYEPNP HYHENTVTQK CSTVEDSCIS SPSASEMDSC 901 950 ENSP00000402527/1-1112 SQNSSAKPVI KKMLNKKHCI AVIDSNPGQE ESDPRYKRNI CSVKYSVKKI ENSTTRP00000015132/1-1110 SQNSAAKPVI KKMLNRKHCV AVIDSNNEQE ESDPRYRRNL SSVKCSLKKI ENSBTAP00000007718/1-1164 SQNSAAKPVI KKMLNRKHCI AVIDSNNEQE ESDPRYRRNI SSVKCSLKKI bmy_07883T0/1-934 SQNSAAKPVI KKMLNRKHCV AVIDSNNEQE ESDPRYRRNI SSVKCSLKKI BACU002040/1-1139 SQNSAAKPVI KKMLNRKHCV AVIDSNNEQE ASDPRYRRNI SSVKCSLKKI 951 1000 ENSP00000402527/1-1112 NHTASENEEF NKGESTSQKV ADRTKSENGL QNESLSSTHH TDGLSKIRLN ENSTTRP00000015132/1-1110 NHTASENEES NKGESACQKV VDRTKSESDL QNEYLSSMHH TDGLSKIRLN ENSBTAP00000007718/1-1164 NHTASENEES NKGEPTCQKF VDRTESENGL QNEYLNSMHH TDGLSKIRLN bmy_07883T0/1-934 NHTASENEES NKGESACQKV VDRTKSENGL QNEYLSSMHH TDGLSKIRLN BACU002040/1-1139 NHTASENEES NKGESACQKV VDRTKSENGL QNEYLSSMHH TDGLSKIRLN 1001 1050 ENSP00000402527/1-1112 YSDESPEAGK MLEDELVDFS EDQDNQDDSS DDGFLADDNC SSEIGQWHLK ENSTTRP00000015132/1-1110 YSDESAEGSK MLEDELIDFS EDQDNQDDSS DDGFLADDNC NSEIGQWHLK ENSBTAP00000007718/1-1164 YSDESAEGSK MLEDELIDFS EDQDNQDDSS DDGLLADDSC SSEIGQWHLK bmy_07883T0/1-934 YSDESAEGSK MLEDELIDFS EDQDNQDDSS DDGFLADDNC NSEIGQWHLK BACU002040/1-1139 YSDESAEGSK MLEDELIDFS EDQDNQGDSS DDGFLADDKC NSEIGQWHLK 1051 1100 ENSP00000402527/1-1112 PTICKQPCIL LMDSLRGPSR SNVVKILREY LEVEWEVKKG SKRSFSKDVM ENSTTRP00000015132/1-1110 PTICKQPCIL LMDSLRGPSR SNVVKILREY LEVEWEVKKG CKRSFSKDVM ENSBTAP00000007718/1-1164 PTLCKQPCIL LMDSLRGPSR SNVVKILREY LEVEWEVKKG SKRSFSKDVM bmy_07883T0/1-934 PTVCKQ---- ---------- ---------Y LEVEWEVRKG SKRSFSKDVM BACU002040/1-1139 PTVCKQPCIL LMDSLRGPSR SNVVKILREY LEVEWEVRKG SKRSFSKDVM 1101 1150 ENSP00000402527/1-1112 KGSNPKVPQQ NNFSDCGVYV LQYVESFFEN PILSFELPMN LANWFPPPRM ENSTTRP00000015132/1-1110 KGSNPKVPQQ NNFSDCGVYV LQYVESFFEN PILNFELPMN LENWFPPPRM ENSBTAP00000007718/1-1164 KGSNPKVPQQ NNFSDCGVYV LQYVESFFEN PILNFELPMN LANWFPPPRM bmy_07883T0/1-934 KGSNPKVPQQ NNFSDCGVYV LQYVESFFEN PILNFELPMN LENWFPPPRM BACU002040/1-1139 KGSNPKVPQQ NNFSDCGVYI LQYVESFFEN PIVNFELPMN LENWFPPLRM 1151 1200 ENSP00000402527/1-1112 RTKREEIRNI ILKLQEDQ-S KEKRKHKDTY STEAPLGEGT EQYVNSISD ENSTTRP00000015132/1-1110 RTKREEIRNI ILKLQEDQRS KEKKKHKD-- TTETSLGKGA ERYISSISV ENSBTAP00000007718/1-1164 RTKREEIRNI ILKLQEDQ-S KEKKKHKDTY STETSLGEGA EQYINSISD bmy_07883T0/1-934 KRKREEIRNI ILKLREDQ-S KEKKRRKDAY STATSLGEGA EQYVGSISD BACU002040/1-1139 KRKREEIRNV ILKLREDQ-S KEKKRRKD-- --TTSVGEGA EQYVSNISD