KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:32:54 2014 Check: 00 .. Name: ENSBTAP00000007760/1-871 Len: 1462 Check: 245 Weight: 1.00 Name: ENSTTRP00000004985/1-872 Len: 1462 Check: 9531 Weight: 1.00 Name: bmy_22175T0/1-803 Len: 1462 Check: 340 Weight: 1.00 Name: BACU012123/1-1339 Len: 1462 Check: 4455 Weight: 1.00 // 1 50 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 MALTLNSISG FISHCAHGVG RSSTDRQFFF INRRPCDPAK VSRLVNEVYH 51 100 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 MYNRHQYPFV VLNISVDMEC VDINVTPDKR QILLQEEKLL LAVLKTSLIG 101 150 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 MLDNDVNKLN VSQQPLFDVE GHLIKRHSAE VEKPVPEKQD DPAPLRTRGE 151 200 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 EKRAVTISRL REAFSLRHTV ENKSRGPKAT DPRRISPRQK SSTPFPSASG 201 250 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 PLCSRKHISE AREEGMTSTQ GPCDPMGRVD TEEGWGHSSA SAGSEEGSST 251 300 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 PKTGSHPSSD HVASSPKDGF SQENVESLEK LPETDHRLSG TNCHLGHEES 301 350 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 GSRPRVLLQP THLSSPNAKR FKKEGVPLNP DVPPESVKTQ NASVYEVDVA 351 400 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 VEINKKIVPL DFSMSSLAKR IKQLCQQEQQ REGGQNYRKF RAKICPGENQ 401 450 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 AAEDELRKEI SKTMFAEMEI IGQFNLGFII TKLNADIFIV DQHATDEKYN 451 500 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 FEMLQQHTVL QGQRLIAPQT LNLTAVNEAV LIENLEIFRK NGFDFVIDED 501 550 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------- ---------- bmy_22175T0/1-803 ---------- ---------- ---------- ---------- ---------- BACU012123/1-1339 APVTERAKLI SLPTSKSWTF GPQDIDELIF MLSDSPGVMC RPSRVRQMFA 551 600 ENSBTAP00000007760/1-871 ---------- ---------- ---------- ---------M VKEKKKADKK ENSTTRP00000004985/1-872 ---------- ---------- ---------- ---------M VKEKKRADKK bmy_22175T0/1-803 -------XKL INALKQTAFN QRSHLILTYI KQTLGLLKAM VKEKKRADKK BACU012123/1-1339 SRACRKSVKL INALKQTAFN PRSHLILTYI EQTLGLLKAM VKEKKRADKK 601 650 ENSBTAP00000007760/1-871 GDKSARSPSS PSDYPEFAKQ DGNAPRQDAS PSAAPALDVQ PKDPGVKREV ENSTTRP00000004985/1-872 GDKLACSPSS VSDHTEFPKQ DGNAARQDMP PGAVPPLDMQ LKEPELEREC bmy_22175T0/1-803 GDKLACSPSS LSDYTEFSKQ DGNAARQDMS PGAVPPLDMQ LKEPGLKREC BACU012123/1-1339 GDKLACSPSS LSDCTEFSKQ DGNAARQDMS PGAVPPLDMQ LEEPGLKREC 651 700 ENSBTAP00000007760/1-871 KSESLPNEDT TQYEEPVLTK LIVESYEGEK VRGLYEGEGF AIFQGGCTYQ ENSTTRP00000004985/1-872 KNDD-QYEDT TQYEEPILTK LIVESYEGEK VRGLYEGEGF AIFQGGCTYH bmy_22175T0/1-803 KNDNLQNEDT TQYEEPILTK LIVESYEGEK VRGLYEGEGF AIFQGGCTYR BACU012123/1-1339 KNDNLRNEDT TQYEEPILTK LIVESYEGEK VRGLYEGEAF AIFQGGCTYH 701 750 ENSBTAP00000007760/1-871 GMFSEGLMHG QGTYIWADGL KYEGDFVKNI PMNHGVFTWP DGSTYEGEVV ENSTTRP00000004985/1-872 GMFSEGLMHG RGTYVWADGL KYEGDFVKNI PMNRGIYTWP DGSTYEGEVV bmy_22175T0/1-803 GTFSEGLMHG RGTYVWADGL KYEGDFVKNI PMNHGVYTWP DGSTYEGEVV BACU012123/1-1339 GTFSEGLMHG RGTYVWADGL KYEGDFVKNI PMNHGVYTWP DGSTYEGEVV 751 800 ENSBTAP00000007760/1-871 GGMRHGFGMF KCSTQPVSYI GHWCHGKRHG KGSIYYNQEG TSWYEGDWIH ENSTTRP00000004985/1-872 NGIRHGFGMF KCSTLPVCYI GHWCHGKRHG KGCICYNQEG TSWYEGDWVH bmy_22175T0/1-803 NGMRHGFGMF KCSMQPVSYI GHWCHGKRHG KGSIYYNQEG TSWYEGDWVH BACU012123/1-1339 NGVRHGFGMF KCSTQPVSYI GHWCHGKRHG KGSIYYNQEG TSWYEGDWVH 801 850 ENSBTAP00000007760/1-871 NIRKGWGIRC YKSGNIYEGQ WENNVRHGEG RMRWLTTNEE YTGQWKHGVQ ENSTTRP00000004985/1-872 NVRKGWGIRR YKSGNIYEGQ WENNVRHGEG RMRWLTTNEE YTGHWEQGAQ bmy_22175T0/1-803 NIKKGWGIRC YKSGNIYEGQ WENNMRHGEG RMRWLTANEE YTGQWEKGVQ BACU012123/1-1339 NIKKGWGIRC YKSGNIYEGQ WENNMRHGEG RMRWLTANEE YTGQWEKGVQ 851 900 ENSBTAP00000007760/1-871 NGLGTHTWFL KRIPYSQYPL RNEYVGEFVN GYRHGHGKFY YASGAMYEGE ENSTTRP00000004985/1-872 NGFGTHTWFL KRIPYSQYPL RNEYVGEFVN GYRHGYGKFY YASGAMYEGE bmy_22175T0/1-803 NGFGTHTWFL KRIPYSQYPL RNEYVGEFVN GYRHGHGKFY YASGAMYEGE BACU012123/1-1339 NGFGTHTWFL KRIPYSQYPL RNEYVGEFVN GYRHGHGKFY YASGAMYEGE 901 950 ENSBTAP00000007760/1-871 WVSNKKHGMG RLTFKNGRVY DGPFSKDHMV AFPNLEGEVM SYPDSTSECA ENSTTRP00000004985/1-872 WVANKKHGMG RLTFKNGRVY DGPFSNDRIA EFPNLEGELI SYLDTTPESA bmy_22175T0/1-803 WVANKKHGM- -----NGRVY DGPFSNDHLA EFPNLEGELI SYQDTTPESA BACU012123/1-1339 WVANKKHGMG RLTFKNGRVY DGPFSNDHLA EFPDLEGELI SYRDTTPESA 951 1000 ENSBTAP00000007760/1-871 FGCQWCRPSA SAEIMRKLDG NESNSLLGSS LELDLSLLLK MYPERDQSEE ENSTTRP00000004985/1-872 LRNQYCRSSI SAEIIRKLDG SESNSTLGSS IELDLSLLLK MYPERDQSEE bmy_22175T0/1-803 LRNQYRRSSI SAEIIRKLDG SESNSTLGSS IELDLSLLLK MYPERDQPEE BACU012123/1-1339 LRNQYRRSSI SAETIRKLDG SESNSMLGSS IELDLSLLLK MYPERDQSEE 1001 1050 ENSBTAP00000007760/1-871 KKQVEYAILR NITELRRIYN FYSSLGCDRS LDNTFLMTKL HFWRFLKDCK ENSTTRP00000004985/1-872 KKQVEYAILR NITELRRIYS FYSSLGCDHS LDNTFLMTKL HFWRFLKDCK bmy_22175T0/1-803 KKQVEYAILR NITELRRIYS FYSSLGCDHS LDNTFLMTKL QFWRFLKDCK BACU012123/1-1339 KKQVEYAILR NITELRRIYS FYSSLGCDHS LDNTFLMTKL QFWRFLKDCK 1051 1100 ENSBTAP00000007760/1-871 FHHHNITLAD MDRVLGANNN IPVEEIHSPF TTLLLRTFLN YLLQLAYHIH ENSTTRP00000004985/1-872 FHHHKITLAD MDRVLSANKD IPVEEIHSPF TTILLTTFLN YLLELAYHIH bmy_22175T0/1-803 FHHHKITLAD MDR------- --------PI RTWLTTSI-- ---------- BACU012123/1-1339 FHHHKITLAD MDRVLSANKD IPVEEIHSPF ATILLRTFLD YLLQLAYHIH 1101 1150 ENSBTAP00000007760/1-871 HKEYQDRSPS LFLCFKKLMN ENIRPNACRV KGRLFCEAQR TLYSMTYVDK ENSTTRP00000004985/1-872 HKEYQDRSPS LFLCFTKLMN ENIRPNACRV KGSLFCEAHR TLYSMNYVDK bmy_22175T0/1-803 ---------- ---------- -------TKN TSNLFCEAHR TLYSMNYVDK BACU012123/1-1339 HKEYQDRSPS LFLCFTKLMN ENIRPNACRV KGNLFCEAHR TLYSMNYVDK 1151 1200 ENSBTAP00000007760/1-871 CWEIYTAHCR PNAAPPHELT MSTRHFLWML RSFKMINKEL TATKFVEVIA ENSTTRP00000004985/1-872 CWEIYTVYCR PNAAPPHELT MDMRHFLWML KRFKMINKEL TARKFVEVIA bmy_22175T0/1-803 CWEIYTVYCR PNAAPPHELT MDMRHFLWML KSFKMINKEL TASKFVEVIA BACU012123/1-1339 CWDIYTVYCR PNAAPPHELT MDMRHFLWML KSFKMINKEL TASKFVEVIA 1201 1250 ENSBTAP00000007760/1-871 EDNPSMYDGI DSNFELELVF LEFFEALLSF ALICVPEPPT KFCSDFPNDD ENSTTRP00000004985/1-872 EDNPFMHDGI DSNFKLELVF LEFFEALLSF ALISVTNQST KFYLNFPNDG bmy_22175T0/1-803 EDNPFMHDGI DSNFKLELVF LEFFEALLSF ALISVTNQST KFYLNFPNDD BACU012123/1-1339 EDNPFMHDGI DSNFKLELVF LEFFEALLSF ALISVTNQST KFYLNFPNDD 1251 1300 ENSBTAP00000007760/1-871 LSVNKAGSTY PVTAQNTQNR SPSAVASQES DIQFSSTKSS SSKLGVLVDI ENSTTRP00000004985/1-872 SSGNKAGSTY TMIKQNTQNR SPSALRSQES EVQDGNTKSS SSKLGVLLDM bmy_22175T0/1-803 LSGNKAGSTY TMINQ----- ---------- ---------- ---------- BACU012123/1-1339 LSGNKAGSTY TMINQNTQNR SPSALRSQES EVQYGSTKSS SSKLGVLLDM 1301 1350 ENSBTAP00000007760/1-871 SKIRKSEPKI KKSVSDGKTS KVNFKSAGKG LTFLLSQSGK KEKHKDEQKE ENSTTRP00000004985/1-872 SKIRQSEPKI KKSVSGGKTS KMNFKSPGKE RTFLLSQNAE KEKSKDEQKE bmy_22175T0/1-803 -------PKI KKSLSDGKTS KMNFKSPGKE LTFLLSQNEK KEKSKDEQKE BACU012123/1-1339 SKIRKSEPKI KKSPSDGKTS KMNLKSPGKE LTFLLSQNG- ---------- 1351 1400 ENSBTAP00000007760/1-871 KFNIWISNMY VFFVNTLFQA HKHEETLKEK VKENRLHNEA MALQRKMENE ENSTTRP00000004985/1-872 KFNTWISNMY IFFVNTLFQA HKHEETLKEK VKENRLRNEA IALQRKVENE bmy_22175T0/1-803 KFNTWISNMY IFFVNTLFQA HQHEETLKEK VKENRLHNEA MAHQRKMENE BACU012123/1-1339 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000007760/1-871 ELEARLNSLR EEEAKRQDYE VDITVIKEPV DAPSSSFTPS PPKEDTVV-- ENSTTRP00000004985/1-872 ELEARLNSLR EEETKRQDCE VAITVIKEPV HATSLNFMPS LLKDDTVVSQ bmy_22175T0/1-803 ELEARLNSLR EEETKRQDCE VAITVIKEAV DAPSLNVTPS PLKEDTVVSQ BACU012123/1-1339 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000007760/1-871 SSKSITSKKK KK ENSTTRP00000004985/1-872 SSKSIANKKK KK bmy_22175T0/1-803 SSKSIANKKK KK BACU012123/1-1339 ---------- --