KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:32:55 2014 Check: 00 .. Name: ENSTTRP00000015446/1-1165 Len: 1204 Check: 718 Weight: 1.00 Name: ENSBTAP00000007764/1-1165 Len: 1204 Check: 6316 Weight: 1.00 Name: bmy_08815T0/1-691 Len: 1204 Check: 134 Weight: 1.00 Name: BACU000187/1-917 Len: 1204 Check: 1498 Weight: 1.00 // 1 50 ENSTTRP00000015446/1-1165 ---------- ---------- --MSCQKFCV AFLHWEFIYV ITAFNLAYPI ENSBTAP00000007764/1-1165 ---------- ---------- --MICQKFCV ALLHWEFIYV ITAFNLAYPI bmy_08815T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU000187/1-917 MSYMMSYIWR TMGRFRKSSS CPDVEDKPFL KALSEKFIYV ITAFNLAYPI 51 100 ENSTTRP00000015446/1-1165 TPWKFKLSCM PRNTTYDFLL PAGISKNTSN LSGHYEALVE TKLNSSGTYL ENSBTAP00000007764/1-1165 TPWKFKLSCM PSNTTYDFLF PPGISKNTSN LNGRYEAVVE TKLNSSGTYL bmy_08815T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU000187/1-917 TPWKFKLSCM PPNTTYDFLL PAGISKNTSN LSGHYEAVVE TKLNSSGTYL 101 150 ENSTTRP00000015446/1-1165 SNLSSRTTFH CCFWSEEDKN CSVHADNIEG KAFVSTVNSL VFQQTSANWN ENSBTAP00000007764/1-1165 SNLSSRTTFH CCFWSEEDKN CSVYTDDIEG KAFVTTVNSL VFQQTGANWN bmy_08815T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU000187/1-917 SNLSSKTTFH CCFWSEEDKN CSVHADNIEG KAFVSTVNSL VFQQIGANWN 151 200 ENSTTRP00000015446/1-1165 IQCWMKEDLK LFICYMESLF KSPFKNYDLK VHLLYLLLEV LEESPLLPQK ENSBTAP00000007764/1-1165 IQCWMKEDLK LFICNIESLF KNPFKNYDLK VHLLYVLLDV LEESPLLPQK bmy_08815T0/1-691 ---------- ---------- ---------- ----MERLEV LEESPLLPQK BACU000187/1-917 IQCWMKEDLK LFICYMESLF KSPFKNYDLK VHLLYLLLEV LEESPLLPQK 201 250 ENSTTRP00000015446/1-1165 SSFQIVQCNC SVHECCECHV PVPTVKINYT LLMYLKITSG GVIFHSPPMS ENSBTAP00000007764/1-1165 DSFQVVQCNC SVHECCECHV PVPTAKLNDT LLMYLKITSG GAVFHSPPMS bmy_08815T0/1-691 SSFQIVQCNC SVHECCECHV PVPTVKINYT LLMYLKITSG GVIFHSPPMS BACU000187/1-917 SSFQIVQCNC SVHECCECHV AVPTVKINYT LLMYLKITSG GVIFHSPPMS 251 300 ENSTTRP00000015446/1-1165 VQPINVVKPD PPLGLCMKIT DTGNLKISWS SPTLVPFQLQ YQVKYSENST ENSBTAP00000007764/1-1165 AQPINVVKPD PPLGLRMEIT DTGSLKISWS SPTLVPFQLQ YQVQYSENST bmy_08815T0/1-691 VQPINVVKPD PPLGLCMKIT DTGNLKISWS SPTLVPFQLQ YQVKYSENST BACU000187/1-917 VQPINVVKPD PPLGLCMKIT DTGNLKISWS SPTLVPFQLQ YQVKYSENST 301 350 ENSTTRP00000015446/1-1165 KNMRKADEIV SATSLLVDSV LPGSSYEVQV RSKRLDGPGI WSDWSTPLTF ENSBTAP00000007764/1-1165 KYIRKTDEIV SATSLLVDSV LPGSSYGAQV RCKRLDGLGI WSDWSALLTF bmy_08815T0/1-691 KNMRK----- ---------- ---------V RSKRLDGPGI WSDWSTPLTF BACU000187/1-917 KNMRKADEIV SATSLLVDSV LPGSSYEVQV RSKRLDGPGI WSDWSTPLTF 351 400 ENSTTRP00000015446/1-1165 TTQDVIYFPP KILTTVGSNV SFHCIYKNEN KIISSKKIVW WMNLAEKIPQ ENSBTAP00000007764/1-1165 TTQDVIYFPP KILTAVGSNI SFHCIYKNEK KIVSSKKIVW WLNLAEKIPQ bmy_08815T0/1-691 TTQDVIYFPP KILTTVGSNV SFHCIYKNEN KIVSSKKIVW WMNLAEKIPQ BACU000187/1-917 TTQDVIYFPP KILTTVGSNV SFHCIYKNEN KIVSSKKIVW WMNLAEKIPQ 401 450 ENSTTRP00000015446/1-1165 SQYDVVGDHV SKVTFPNLNA TKPRGKFTYD AVYCCNEHEC HHRYAELYVI ENSBTAP00000007764/1-1165 SQYDVVDDHI SKVTFPNLNA TKPRGKFTYD AVYCCNEQEC HHRYAELYVI bmy_08815T0/1-691 SQYDVVDDHV SKVTFPNLNA TKPRGKFTYD AVYCCNEHEC HHRYAELYVI BACU000187/1-917 SQYDVVGDHV SKVTFPNLNA TKPRGKFTYD AVYCCNEHEC HHRYAELYVI 451 500 ENSTTRP00000015446/1-1165 DVNINISCET DGYLTKMTCR WSPSAIQSLV GSTLQLRYQX ---------- ENSBTAP00000007764/1-1165 DVNINISCET DGYLTKMTCR WSPNAIQSLA GSNLQLRYHR ---------- bmy_08815T0/1-691 DVNINISCET DGYLTKMTCR WSPSAIQSLV GSTLQLRYHR YVYFCCFIFL BACU000187/1-917 DVNINISCET DGYLTKMTCR WSPSAIQSLV GSTLQLRYHR ---------- 501 550 ENSTTRP00000015446/1-1165 ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007764/1-1165 ---SSLYCSD VPSIHPVSEP KDCHLQRDGF YECIFQPIFL LSGYTMWIRI bmy_08815T0/1-691 WIWSSLYCSD VPSIHPISEP KDCHLQRDGF YECLFQPIFL LSGYTMWIRI BACU000187/1-917 ---SSLYCSD VPSIHPISEP KDCHLQRDGF YECLFQPIFL LSGYTMWIRI 551 600 ENSTTRP00000015446/1-1165 XXXXXXXXXX XXXXXXXXXX KPLPPSSVKA EITVKIGLLK ISWEKPVFPE ENSBTAP00000007764/1-1165 NHTLGSLDSP PACVIPDSVV KPLPPSSVKA EITVKIGLLK ISWEKPVFPE bmy_08815T0/1-691 NHSLGSLDSP PTCVIPDSVV KPLPPSSVKA EITVKIGLLK ISWEKPVFPE BACU000187/1-917 NHSLGSLDSP PTCVIPDSVV KPLPPSSVKA EITVKIGLLK ISWEKPVFPE 601 650 ENSTTRP00000015446/1-1165 NNLQFQIRYG LSGKKVQWKV FEVYDAKLKS ASFPVPDLCA VYAVQVRCKR ENSBTAP00000007764/1-1165 NNLQFQIRYG LSGKQVQWKM FEVYDAKLKS ASLPVPDLCA VYTVQVRCKR bmy_08815T0/1-691 NNLQFQIRYG LSGKEVQWKV FEVYDAKLKS ASFPVPDLCA VYAVQVRCKR BACU000187/1-917 NNLQFQIRYG LSGKEVQWKV FEVYDAKLKS ASFLVPDLCA VYAVQVRCKR 651 700 ENSTTRP00000015446/1-1165 LDGLGYWSNW STPAYXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007764/1-1165 LDGLGYWSNW STPAHTVVMD VKVPIRGPEF WRLISEDTTK KERNVTLLWK bmy_08815T0/1-691 LDGLGYWSNW STPAYTIVMD IKVPIRGPEF WRIINEDNTK KERNVTLLWK BACU000187/1-917 LDGLGYWSNW STPAYTVVTD IKVPIRGPEF WRIINEDNTK KERNVTLLWK 701 750 ENSTTRP00000015446/1-1165 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007764/1-1165 PLMKNDSLCS VRRYVVKHHT SHNGTWLEDV GNHTKLTFLW TEQAHSVMVL bmy_08815T0/1-691 LLLYEN---- ---------- --RGLFL--- -----FCFLD EETLNSLSVF BACU000187/1-917 PLMKNDSLCS VRRYVVKHHT SLNGTWSEDV GNHTKFTFLW TEQAHSVTVL 751 800 ENSTTRP00000015446/1-1165 XXXXXXXXXX XXXXXXXXXX XXXNIVQSLS AYPLNSSCVI LSWMLSPSDY ENSBTAP00000007764/1-1165 AINSIGASSA NFNLTFSQAI SKVNIVQSLS AYPLNSSCVI LSWMLSPSDY bmy_08815T0/1-691 LFSRIRVKLP ---------- --VNIVQSLS AYPLNSSCVI LSWMLSPSDY BACU000187/1-917 AINSIGASSA NFNLTFSWPM SKVNIVQSLS AYPLNSSCVI LSWMISPSDY 801 850 ENSTTRP00000015446/1-1165 NLMYFILEWK ILHEDNEIKW LRIPSSVKKY YVHDHFIPIE KYQFSLYPIF ENSBTAP00000007764/1-1165 NLMYFILEWK ILNEDSEIKW LRIPSSVKKY YVHDYFIPIE KYQFSLYPIF bmy_08815T0/1-691 NLMYFILEWK ILHEDNEIKW LRIPSSVKKY YVHDHFIPIE KYQFSLYPIL BACU000187/1-917 NLMHFILEWK ILHEDNEIKW LRISSSVKKY YVHDHFIPIE KYQFSLYPIF 851 900 ENSTTRP00000015446/1-1165 MEGVGKPKII DSFTQDDEKH QHDAGLYVIV PIIISSSILL LGTLLISHQR ENSBTAP00000007764/1-1165 TEGVGKPKII NSFAQDDEKH QHDADLYVIV PIIISSSILL LGILSVSHQR bmy_08815T0/1-691 MEGVGKPKII DSFTQDDEKH QHDAGLYIIV PIIISSSILL LGTLLISHQR BACU000187/1-917 MEGVGKPKII DSFTQDDEKH QHDAGLYVIV PIIISSSILL LGTLLISHQR 901 950 ENSTTRP00000015446/1-1165 ----MKKLFW EDVPNPKNCS WAQGLNFQKP ETFEHLFIKH TESVTFGPLL ENSBTAP00000007764/1-1165 ----MKKLFW EDVPNPKNCS WAQGLNFQKP ETFEHLFIKH TESTTFGPLL bmy_08815T0/1-691 YCTWMKKLFW EDVPNPKNCS WAQGLNFQK- ---------- ---------- BACU000187/1-917 ----MKKLFW EDVPNPKNCS WAQGLNFQK- ---------- ---------- 951 1000 ENSTTRP00000015446/1-1165 LEPETISEDI SVDTSWKNKD EMVPPTTVSL LLMTRDLEKG SICISDQCNS ENSBTAP00000007764/1-1165 LEPETISEDI SVDTSWKNKD EMVPATTDAL LLTTPDLEKG SICISDQCSS bmy_08815T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU000187/1-917 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000015446/1-1165 AHFSEVESTE ITCEEESRRQ PSVKYATLLS NSKSGETEEE QRLVNSAVSK ENSBTAP00000007764/1-1165 AQFSEAESTD ITCEDESRRQ PSVKYATLLS NSKSGETEEE QGLINSSVSK bmy_08815T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU000187/1-917 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000015446/1-1165 CFSSNNSLPK DSFSNNSWEI ETQAFFILSD QHPNIISPHL PFSGGLDELL ENSBTAP00000007764/1-1165 CFLSNNSPPK DSSSKRSWEI ETQAFFILSD QHPNIISPHL PFSEGLDELL bmy_08815T0/1-691 ---------- ---------- ---------- ---------V PF-------- BACU000187/1-917 ---------- ---------- ---------- ---------- RM-------- 1101 1150 ENSTTRP00000015446/1-1165 KLEGNFPEEN HDERSVYYLG VTSIKKRESD VLLTDESRVL SPFPSHCLFT ENSBTAP00000007764/1-1165 KLEGNFPEEN NNERPVYYLG VTSIKKRESD VFLTNESRVL SPFPAHCLFT bmy_08815T0/1-691 ---------- ---------- ---------S VF-------- ---------- BACU000187/1-917 ---------- ---------- ---------D IL-------- ---------- 1151 1200 ENSTTRP00000015446/1-1165 DIRILQDSCS HLVENNFNLG TSDQKTFVSY IPQFQTCSTR TQKIVENKMC ENSBTAP00000007764/1-1165 DIRILQDSCS HLVENNFNLG TSGQKTFVSY MPQFQTCSTQ TQKIMENKMC bmy_08815T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU000187/1-917 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000015446/1-1165 DLTV ENSBTAP00000007764/1-1165 DLTV bmy_08815T0/1-691 ---- BACU000187/1-917 ----