KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:57 2014 Check: 00 .. Name: ENSP00000262198/1-1131 Len: 1198 Check: 2775 Weight: 1.00 Name: ENSTTRP00000002249/1-1124 Len: 1198 Check: 8572 Weight: 1.00 Name: ENSBTAP00000007769/1-1146 Len: 1198 Check: 5521 Weight: 1.00 Name: bmy_21092T0/1-1157 Len: 1198 Check: 7370 Weight: 1.00 Name: BACU004438/1-1185 Len: 1198 Check: 7120 Weight: 1.00 // 1 50 ENSP00000262198/1-1131 ---------- ---------- ---------- ----MFQIPV ENLDNIRKVR ENSTTRP00000002249/1-1124 ---------- ---------- ---------- ----MFQIPV ENLDNIRKVR ENSBTAP00000007769/1-1146 ---------- ---------- ---------- ----MFQIPV ENLDNIRKVR bmy_21092T0/1-1157 ---------- ---------- ---------- ----MFQIPV ENLDNIRKVR BACU004438/1-1185 MCKENMIPAL KKFSPVGEIG IEVDNCNVVR KISKMFQIPV ENLDNIRKVR 51 100 ENSP00000262198/1-1131 KKVKGILVDI GLDSCKELLK DLKGFDPGEK YFHNTSWGDV SLWEPSGKKV ENSTTRP00000002249/1-1124 KKVKSILMDI GLDSCKELLK DLKGFDPGEK YFYNTSWGDI SLWEPSGKKV ENSBTAP00000007769/1-1146 KKVKSILVDI GLDSCKELLK DLKGFDPGEK YFYNTSWGDI SLWEPSGKKV bmy_21092T0/1-1157 KKVKSILVDI GLDSCKELLK DLKGFDPGEK YFYNTSWGDI SLWEPSGKKV BACU004438/1-1185 KKVKSILVDI GLDSCKELLK DLKGFDPGEK YFYNTSWGDI SLWEPSGKKV 101 150 ENSP00000262198/1-1131 RYRTKPYCCG LCKYSTKVLT SFKNHLHRYH EDEIDQELVI PCPNCVFASQ ENSTTRP00000002249/1-1124 RYRTKPYCCS LCKYSTKVLT SFKNHLHRYH EDEIDQELVI PCPNCVFSSQ ENSBTAP00000007769/1-1146 RYRTKPYCCS LCKYSTKVLT SFKNHLHRYH EDEIDQELVI PCPNCVFSSQ bmy_21092T0/1-1157 RYRTKPYCCS LCKYSTKVLT SFKNHLHRYH EDEIDQELVI PCPNCVFSSQ BACU004438/1-1185 RYRTKPYCCS LCKYSTKVLT SFKNHLHRYH EDEIDQELVI PCPNCVFSSQ 151 200 ENSP00000262198/1-1131 PKVVGRHFRM FHAPVRKVQN YTVNILGETK SSRSDVISFT CLKCNFSNTL ENSTTRP00000002249/1-1124 PRVVGRHFRM FHAPARKVQN YTVNILGETK SSRSDVISFT CLKCNFSNTL ENSBTAP00000007769/1-1146 PRVVGRHFRM FHAPARKVQN YTVNILGETK SSRSDVISFT CLKCNFSNTL bmy_21092T0/1-1157 PRVVGRHFRM FHAPARKVQN YTVNILGETK SSRSDVISFT CLKCNFSNTL BACU004438/1-1185 PRVVGRHFRM FHAPARKVQN YTVNILGETK SSRSDVISFT CLKCNFSNTL 201 250 ENSP00000262198/1-1131 YYSMKKHVLV AHFHYLINSY FGLRTEEMGE QPKTNDTVSI EKIPPPDKYY ENSTTRP00000002249/1-1124 YYSMKKHVLV AHFHYLINSY FGLRTEEMGE QPRADDPRST EKMPPSDRYY ENSBTAP00000007769/1-1146 YYSMKKHVLV AHFHYLINSY FGLRTEEMGE HPGADDTLCA EKLPLSDRYY bmy_21092T0/1-1157 YYSMKKHVLV AHFHYLINSY FGLRTEEMGE QPRADDTLST QKMPPSDRYY BACU004438/1-1185 YYSMKKHVLV AHFHYLINSY FGLRTEEMGE QPRADDTLST EKMPPSDRYY 251 300 ENSP00000262198/1-1131 CKKCNANASS QDALMYHILT SDIHRDLENK LRSVISEHIK RTGLLKQTHI ENSTTRP00000002249/1-1124 CKKCSANASS QDALMYHILT SDIHRDLENK LRSVISEHIK KTGLLKQMHI ENSBTAP00000007769/1-1146 CKKCNANASS QDALMYHILT SDIHRDLENK LRSVISEHIK KTGLLKQMHI bmy_21092T0/1-1157 CKKCNANASS QDALMYHILT SDIHRDLENK LRSVISEHIK KTGLPKQMHI BACU004438/1-1185 CKKCNANSSS QDALMYHILT SDIHRDLENK LRSVISEHIK KTGLPKQMHI 301 350 ENSP00000262198/1-1131 APKPAAHLAA PANGSAPSAP AQPPCFHLAL PQNSPSPAAG QPVTVA---- ENSTTRP00000002249/1-1124 APKPAARVAV PPNSSAPGIP ATSPCFHLAL PQNSQSQTVV QPVTGA---- ENSBTAP00000007769/1-1146 APKPAAHVAI PPNSSAPGIP ASSPCFHLAL PQNGQSQTVV QPVQGAAPPA bmy_21092T0/1-1157 APKPAARAAV PPNSSAPGLP ATPPCFHLAL PQNSQSQTVV QPVQGAPPPV BACU004438/1-1185 APKPAARAAV PPNSSAPGLP ATPPCFHLAL PQNSQSQTVV QPVQGAPPPV 351 400 ENSP00000262198/1-1131 ---QGAPGSL THSPPAAGQS HMTLVSSPLP VGQNSLTLQP PAPQPVFLSH ENSTTRP00000002249/1-1124 ---SGASGSL THSPPAVAQS HVTLVSSPLP VGQSNLTLPP STPQPVFLSH ENSBTAP00000007769/1-1146 TVGAGAVGSV THSPPAVAQP HMTLVSSPLP VGQSSLTLPP STPQPVFLSH bmy_21092T0/1-1157 TVASGASGSL THSPPAVAQS HVTLVSSTLP VGQSNLTLPP STPQPVFLSH BACU004438/1-1185 TVASGASGSL THSPPAVAQS HVTLVSSTLP VGQSNLTLPP STPQPVFLSH 401 450 ENSP00000262198/1-1131 GVPLHQSVNP PVLPLSQPVG PVNKSVGTSV LPINQTVRPG VLPLTQPVGP ENSTTRP00000002249/1-1124 GVPLNQAANP PALPLSQPVG PVNKSVGTGV LPIKQTIRPG VLPLSQPVGP ENSBTAP00000007769/1-1146 GVPLNQAANP PVLPLSQPVG PVNKSVGTSI LPINQTIRPG VLPLNQPVGP bmy_21092T0/1-1157 GVPLNQAANP PVLPLSQPVG PVNKSVGTGV LPINQTIRPG VLPLNQPVGP BACU004438/1-1185 GVPLNQAANP PVLPLSQPVG PVNKSVGTGV LPINQTIRPG VLPLNQPVGP 451 500 ENSP00000262198/1-1131 INRPVGPGVL ---------- -PVSPSVTPG VLQAVSPGVL SVSRAVPSGV ENSTTRP00000002249/1-1124 ISRPVGPGVL ---------- -PVNPSVTPG VLQAVSPGVI SVSRTVPSGV ENSBTAP00000007769/1-1146 ISRPVGPGVL SVNRPVGSGV LPVNPSVTPG VLQAVSPGVI SVSRTVPSGV bmy_21092T0/1-1157 ISRPVGPGVL SVNRPVGSGV LPVNPSVTPG VLQAVSPGVI SVSRTVPSGV BACU004438/1-1185 ISRPVGPGVL SVNRPVGSGV LPVNPSVTPG VLQAVSPGVI SVSRTVPSGV 501 550 ENSP00000262198/1-1131 LPAGQMTPAG QMTPAGVIP- GQTATSGVLP TGQMVQSGVL PVGQTA---- ENSTTRP00000002249/1-1124 LPA------G QM-PAGVIPS GQTATSGVLP AGQVVQSGVL PIGQTA---- ENSBTAP00000007769/1-1146 LPA------G QVTPAGVIPS GQTATSGVLP AGQVVQSGVL PIGQTA---- bmy_21092T0/1-1157 LPA------G QMTPAGVIPS GQTATSGVLP AGQVVQSGVL PIGQTAPSGV BACU004438/1-1185 LPA------G QMTPAGVIPS GQTATSGVLP AGQVVQSGVL PIGQTAPSGV 551 600 ENSP00000262198/1-1131 -------PSR VLPPGQTAPL RVISAGQVVP SGLLSPNQTV SSSAVVPVNQ ENSTTRP00000002249/1-1124 -------PPR VLPPGQTVPL RVLPAGQVVP PGLLPPNQTV -SSGVLPVNQ ENSBTAP00000007769/1-1146 -------PSG ALPTGLTVPL RVLPPGQVVP PGLLPPNQTV -SSAVLPVNQ bmy_21092T0/1-1157 LPPGLTVPPR VLPPGQTVPL RVLPAGQVVP PGLLPPSQTV -SSGVLPVNQ BACU004438/1-1185 LPPGLTVPPR VLPPGQTVPL RVLPAGQVVP PGLLPPSQTV -SSGVLPVNQ 601 650 ENSP00000262198/1-1131 GVNSGVLQLS QPVVSGVLPV GQPVRPGVLQ LNQTVGTNIL PVNQPVRPGA ENSTTRP00000002249/1-1124 GINSGVLQLS QPVVSGVLPV GQPVRPGVLQ LNQSVSTNIL PAHQPIRPGA ENSBTAP00000007769/1-1146 GINSGVLQLS QPVMSGVLPV GQPVRPGVLQ LNQSVNTNIL PANQTIRPGA bmy_21092T0/1-1157 GINSGVLQLS QPVVSGVLPV GQPVRPGVLQ LNQSVSTNIL PAHQPIRPGA BACU004438/1-1185 GINSGVLQLS QPVVSGVLPV GQPVRPGVLQ LNQSVSTNIL PAHQPIRPGA 651 700 ENSP00000262198/1-1131 SQNTTFLTSG SILRQLIPTG KQVNGIPTYT LAPVSVTLPV PPGGLATVAP ENSTTRP00000002249/1-1124 SPNTAFLTSG SILRQLIPTG KQVNGIPTYT LAPVSVTLPV PPGSVATVAP ENSBTAP00000007769/1-1146 SPNTTFLTSG SILRQLIPTG KQVNGIPTYT LAPVSVTLPV PPGSVATVAP bmy_21092T0/1-1157 SPNTAFLTSG SILRQLIPTG KQVNGIPTYT LAPVSVTLPV PPGSVTTVAP BACU004438/1-1185 SPNTAFLTSG SILRQLIPTG KQVNGIPTYT LAPVSVTLPV PPGSVATVAP 701 750 ENSP00000262198/1-1131 PQMPIQLLPS GAAAPMAGSM PGMPSPPVLV NAAQSVFVQA SSSAADTNQV ENSTTRP00000002249/1-1124 PQMPIQLLQS GTAAQMASSM ASLPSPPVVV NAAQNMFVQP SSSXXXXXXX ENSBTAP00000007769/1-1146 PQMPIQLLQS GPAAQMASSM AGMPSPPVVV NATQNMFVQA SSSVAEANQV bmy_21092T0/1-1157 PQMPIQLLQS GTAAQMASSM ASLPSPPVVV NATQNMFVQP SSSVAEANQV BACU004438/1-1185 PQMPIQLLQS GTAAQMAGSM ASLPSPPAVV NATQNVFVQP SASVAEANQV 751 800 ENSP00000262198/1-1131 LKQAKQWKTC PVCNELFPSN VYQVHMEVAH KHSESKSGEK LEPEKLAACA ENSTTRP00000002249/1-1124 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007769/1-1146 LKQAKQWKTC PVCNELFPSN VYQVHMEVAH KHSESKAADK LEPEKLAACA bmy_21092T0/1-1157 LKQAKQWKTC PVCNELFPSN VYQVHMEVAH KHSESKSAET LEPEKLAACA BACU004438/1-1185 LKQAKQWKTC PVCNELFPSN VYQVHMEVAH KHSESKSAET LEPEKLAACA 801 850 ENSP00000262198/1-1131 PFLKWMREKT VRCLSCKCLV SEEELIHHLL MHGLGCLFCP CTFHDIKGLS ENSTTRP00000002249/1-1124 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLFCP CTFHDIKGLS ENSBTAP00000007769/1-1146 PFLKWMREKT VRCLSCKCLV SEEELIHHLL MHGLGCLFCP CTFHDIRGLS bmy_21092T0/1-1157 PFLKWMREKT VRCLSCKCLV SEEELIRHLL VHGLGCLFCP CTFHDIKGLS BACU004438/1-1185 PFLKWMREKT VRCLSCKCLV SEAELIRHLL VHGLGCLFCP CTFHDIKGLS 851 900 ENSP00000262198/1-1131 EHSRNRHLGK KKLPMDYSNR GFQLDVDANG NLLFPHLDFI TILPKEKLGE ENSTTRP00000002249/1-1124 EHSRAMH-GK RRLPVDYSDK GFQLDVDANG SVLFPHLDFI TILPREELGE ENSBTAP00000007769/1-1146 EHSRTMHLGK KKLPMDYSNK GFQLDIDANG NLLFPHLDFI TILPREELGE bmy_21092T0/1-1157 EHSRAMHLGK RRLPVDYSDK GFQLDVDANG SLLFPHLDFI TILPREELGE BACU004438/1-1185 EHSRAMHLGK RRLPVDYSDK GFQLDVDANG SLRFPHLDFI TILPREELGE 901 950 ENSP00000262198/1-1131 REVYLAILAG IHSKSLVPVY VKVRPQAEGT PGSTGKRVST CPFCFGPFVT ENSTTRP00000002249/1-1124 REVYLAVLAG IHSKSLVPVY IKVRPQTEGA PGRPGNQALT CPFCFGTFVT ENSBTAP00000007769/1-1146 REVYLAILAG IHSKSLVPVY IKVRPQAEGA SGRPGKQVLT CPFCFGTFVT bmy_21092T0/1-1157 REVYLAVLAG IHSKSLVPVY IKVRPQTEGA PGRPGNQALT CPFCFGTFVT BACU004438/1-1185 REVYLAVLAG IHSKSLVPVY IKVRPQTEGA PGRPGRQALS CPFCFGTFVA 951 1000 ENSP00000262198/1-1131 TEAYELHLKE RHHIMPTVHT VLKSPAFKCI HCCGVYTGNM TLAAIAVHLV ENSTTRP00000002249/1-1124 AEAYELHLKE RHHIMPTVHT ILKSPAFKCI HCCGVYTGNM TLAAIAIHLL ENSBTAP00000007769/1-1146 TEAYELHLKE RHHITPTVHT ILKSPAFKCI HCCGVYTGNM TLAAIAIHLL bmy_21092T0/1-1157 AEAYELHLKE RHHITPTVHT ILKSPAFKCI HCCGVYTGNM TLAAIAIHLL BACU004438/1-1185 AEAYELHLKE RHHITPTVHT VLKSPAFKCI HCCGVYTGNM TLAAIAIHLL 1001 1050 ENSP00000262198/1-1131 RCRSAPKDSS SDLQAQPGFI HNSELLLVSG EVMHDSSFSV KRKLPDGHLG ENSTTRP00000002249/1-1124 RCRSAPKDSS SGLQVQPNFI ENSELLLVNG EVIHDSSFSV KRKMPDGQFG ENSBTAP00000007769/1-1146 RCRSAPKDSS PDLQGQPGLL ENSELLLVNG EVIHDPSFSV KRKLPDGHSG bmy_21092T0/1-1157 RCRSAPKDSS SGLQVQPNFI ENSEVLLVNG EVIHDSSFSV KRKMPDGQFG BACU004438/1-1185 RCRSAPKDSS SGLQVQPNFI ENGEVLLVNG EVIHDSSFSV KRKMPDGQFG 1051 1100 ENSP00000262198/1-1131 AEDQRHGEEQ PPILNADAAP GPEKVTSVVP FKRQRNESRT EGPIVKDEAL ENSTTRP00000002249/1-1124 AEEQREGEER PVPTSADREP SPEKATSAVP SKRQRSESRT EAPLVHDDAL ENSBTAP00000007769/1-1146 AEDQRDGTER PLIIDADTDP APEKAASAAP VKRQRSEGRT EGPPVSDDAL bmy_21092T0/1-1157 AEDQRDGEER PLIINADTDP SPEKVTSVVP FKRQRNESRT EGPLVNDDAL BACU004438/1-1185 AEDQRDGEER PLIINADTDP SPEKGTSV-- ----RNESRT EGPLVNDDAL 1101 1150 ENSP00000262198/1-1131 QILALDPKKY EGRSYEEKKQ FLKDYFHKKP YPSKKEIELL SSLFWVWKID ENSTTRP00000002249/1-1124 QVLALNPKRY EDRSYEEKKQ FLRDYFHKRP YPSKKEIELL SSLLWVWKID ENSBTAP00000007769/1-1146 QILALNPKKY EDRSYEDKKQ FLRDYFHKRP YPSKKEIELL SSLLWVWKID bmy_21092T0/1-1157 QILALNPKKY EDRSYEEKKQ FLRDYFHKRP YPSKKEIELL SSLLWVWKID BACU004438/1-1185 QILALNPKKY EDRSYEEKKQ FLRDYFHKRP YPSKKEIELL SSLLWVWKID 1151 1200 ENSP00000262198/1-1131 VASFFGKRRY ICMKAIKNHK PSVLLGFDMS ELKNVKHRLN FEYEP--- ENSTTRP00000002249/1-1124 VASFFGKRRY ICMKAIKNHK PSVLLGFDMS ELKNVKHRLN FDYEPQ-- ENSBTAP00000007769/1-1146 VASFFGKRRY ICMKAIKNHK PSVLLGFDMC ELKNVKHRLN FEHEPQNL bmy_21092T0/1-1157 VASFFGKRRY ICMKAIKNHK PSVLLGFDMS ELKNVKHRLN FDYQPQNL BACU004438/1-1185 MASFFGKRRY ICMKAIKNHK PSVLLGFDMS ELKNVKHRLS FDYQPQNL