KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:58 2014 Check: 00 .. Name: BACU004439/1-329 Len: 492 Check: 2237 Weight: 1.00 Name: bmy_21094T0/1-336 Len: 492 Check: 3121 Weight: 1.00 Name: ENSP00000343144/1-376 Len: 492 Check: 90 Weight: 1.00 Name: ENSTTRP00000002250/1-367 Len: 492 Check: 5610 Weight: 1.00 Name: ENSBTAP00000007772/1-371 Len: 492 Check: 1777 Weight: 1.00 // 1 50 BACU004439/1-329 --MNRSFHKS QTLRFYDCSA VEVKSKALPL LPSLAWNDNG LLLWGKADYS bmy_21094T0/1-336 MAVEPGFL-D LVLAYWWVGP VADMAG---- ---------- ---------- ENSP00000343144/1-376 --MNRSFHKS QTLRFYDCSA VEVKSK---- ---------- ---------- ENSTTRP00000002250/1-367 --MNRSFHKN QTLRFYDCSA XXXXXX---- ---------- ---------- ENSBTAP00000007772/1-371 --MNRSFHKS QTLGFYDCSA VEVKSK---- ---------- ---------- 51 100 BACU004439/1-329 ACRKVLHTEE EVAPGSWRQL RLRDEQGTQI SQEGAPLACR GVRKPVRLDA bmy_21094T0/1-336 ---------- ---------- ---------- ---------- ---------- ENSP00000343144/1-376 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002250/1-367 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007772/1-371 ---------- ---------- ---------- ---------- ---------- 101 150 BACU004439/1-329 LVGSVQHESC WFLQSDYAHR HTRSAFLTAS EAKITFGA-E FRRFSLDRQK bmy_21094T0/1-336 ---------- ---------- ---------- -----CGFYS IPRLVLAHCI ENSP00000343144/1-376 ---------- ---------- ---------- -----FGA-E FRRFSLDRHK ENSTTRP00000002250/1-367 ---------- ---------- ---------- -----FGA-E FRRFSLDRQK ENSBTAP00000007772/1-371 ---------- ---------- ---------- -----FGA-E FRRFSLDRQK 151 200 BACU004439/1-329 PGKFEDFYKL VVHTHHISNT EVTIGYADVH GDLLPINNDD NFCKAVSSAN bmy_21094T0/1-336 PGQLAEDSKT SLGSHHKSEK ---------- ---------- ---------- ENSP00000343144/1-376 PGKFEDFYKL VVHTHHISNS DVTIGYADVH GDLLPINNDD NFCKAVSSAN ENSTTRP00000002250/1-367 PGKFEDFYKL VVHTHHISNT EVTIGYADVH GDLLPINNDD NFCKAVSSAN ENSBTAP00000007772/1-371 PGRFEDFYKL VVHTHHIANT EVTIGYADVH GDLLPINNDD NFCKAVSSAN 201 250 BACU004439/1-329 PLLRVFIQKR GNRPLYCCIG STAAGTLALW RAALGTL--- ---------- bmy_21094T0/1-336 -------RWE EEAEH-CSFG ---VGSLSRR RRPL-ALRED GPRRRTHLHI ENSP00000343144/1-376 PLLRVFIQKR EEAER-GSLG ---AGSLCRR RRALGALRDE GPRRRAHLDI ENSTTRP00000002250/1-367 PLLRVFIQKR EEAER-CSFG ---VGSLSRR RRPL-ALRED GPRRRTHLHI ENSBTAP00000007772/1-371 PLLRVFIQKR EEAEH-CSFG ---AGSLSRR RRPL-ALRED GPRRRTHLHI 251 300 BACU004439/1-329 ---------- ---------- ---------- ---------- -GSLCCRVSE bmy_21094T0/1-336 GLPHDFRPVS SIIDVDILPE THRRVRLYRH GCQKPLGFYI RDGTSVRVAP ENSP00000343144/1-376 GLPRDFRPVS SIIDVDLVPE THRRVRLHRH GCEKPLGFYI RDGASVRVTP ENSTTRP00000002250/1-367 GLPHDFRPVS SIIDVDILPE THRRVRLYRH GCQKPLGFYI RDGTSVRVAP ENSBTAP00000007772/1-371 GLPHDFRPVS SIIDVDIVPE THRRVRLYRH GCQKPLGFYI RDGTSVRVAP 301 350 BACU004439/1-329 AQWENLPQVI V------GLR E--------E NLPDVPKAWL YAPSLGKLGK bmy_21094T0/1-336 QGLEKVPGIF ISRMVPGGLA ESTGLLAVDD EVLEVNGIEV AGKTLDQVTD ENSP00000343144/1-376 HGLEKVPGIF ISRMVPGGLA ESTGLLAVND EVLEVNGIEV AGKTLDQVTD ENSTTRP00000002250/1-367 QGLEKVPGIF ISRMVPGGLA ESTGLLAVDD EVLEVNGIEV AGKTLDQVTD ENSBTAP00000007772/1-371 QGLEKVPGVF ISRMVPGGLA ESTGLLAVDD EVLEVNGIEV AGKTLDQVTD 351 400 BACU004439/1-329 LGLSS----- ----PCPQWS PAVKTASQWE RQGQSC--FC GRRQA----- bmy_21094T0/1-336 MMIANSHNLI VTVKPANQRN NVVRGSRALG GSSRSSDSTA SRHSLPAAHA ENSP00000343144/1-376 MMIANSHNLI VTVKPANQRN NVVRGGRALG SSGPPSDGTA GFVGPPAPRV ENSTTRP00000002250/1-367 MMIANSHNLI VTVKPANQRN NVVRGSRALG SSGRSSDSTA SRHSLPTAHV ENSBTAP00000007772/1-371 MMIANSHNLI VTVKPANQRN NVVRGSRASG SSGRSSDSTA SRHSLPAAHV 401 450 BACU004439/1-329 ---------- ---------- ---------- ---------- ---GAILVPY bmy_21094T0/1-336 LQNLPPDEME SDEEADVVLE GVLEPR---L VPRPPPGSLA RVNGAGLVPG ENSP00000343144/1-376 LQNFHPDEAE SDEDNDVVIE GTLEPARPPQ TPGAPAGSLS RVNGAGLAQR ENSTTRP00000002250/1-367 LQNLPPDEME SDEEADVVLE GVLEPG---W YPG-PPGSLA RVNGAGLAPG ENSBTAP00000007772/1-371 LQNLPPDEME SDEEADVVLE GVLEPR---L APRPPPGSLT RVNGAGLAPS 451 500 BACU004439/1-329 V----FRKGS L--------- ---------- ---------- TV bmy_21094T0/1-336 LHSP-GREGS VQRLLSSLRS DPRHSLALPP GGVEEHGPAV TL ENSP00000343144/1-376 LQRDLALDGG LQRLLSSLRA DPRHSLALPP GGVEEHGPAV TL ENSTTRP00000002250/1-367 L----ALGGS VQRLLSSLRS DPRHSLALPP GGVEEHGPAV TL ENSBTAP00000007772/1-371 LHSP-GREGS VQRLLSSLRS DPRHSLALPP GGVEEHGPAV TL