KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:10 2014 Check: 00 .. Name: ENSTTRP00000002224/1-941 Len: 1015 Check: 1551 Weight: 1.00 Name: ENSP00000380638/1-1009 Len: 1015 Check: 3790 Weight: 1.00 Name: ENSBTAP00000007819/1-994 Len: 1015 Check: 7031 Weight: 1.00 Name: bmy_05088T0/1-917 Len: 1015 Check: 8025 Weight: 1.00 Name: BACU015284/1-1009 Len: 1015 Check: 7101 Weight: 1.00 // 1 50 ENSTTRP00000002224/1-941 ---------- ---------- ---------- ---------- ---------- ENSP00000380638/1-1009 MSGVSEPLSR VKLGTLRRPE GPAEPMVVVP VDVEKEDVRI LKVCFYSNSF ENSBTAP00000007819/1-994 MSGVSEALSR VKVGTLRRPE GPPEPMVVVP VDVEKEDVRI LKVCFYGNSF bmy_05088T0/1-917 MGALDGQVDR ---------- ---------- -EVQ------ ---------- BACU015284/1-1009 MSGVSEALSR VKVGTLRRPE GPPEPMVAVP VDVEKEDVRI LKVCFYSNSF 51 100 ENSTTRP00000002224/1-941 ---------- --------EV ITSILLSGRI GPNIQLADCY GLRLKHMKSD ENSP00000380638/1-1009 NPGKNFKLVK CTVQTEIREI ITSILLSGRI GPNIRLAECY GLRLKHMKSD ENSBTAP00000007819/1-994 NSGKNFKLVK CTVQTEIRDV IASILLSGRI GPNIQLADCY GLRLKHMKSD bmy_05088T0/1-917 ---------- -------REV ITSILLSGRI GPNIQLADCY GLRLKHMKSD BACU015284/1-1009 NPGKNFKLVK CTVQTEIREV ITSILLSGRI GPNIQLADCY GLRLKHMKSD 101 150 ENSTTRP00000002224/1-941 EIHWLHPQMT VGEVQDKYEC LHMEAEWRYD LQIRYLPEDF MESLKEDRTT ENSP00000380638/1-1009 EIHWLHPQMT VGEVQDKYEC LHVEAEWRYD LQIRYLPEDF MESLKEDRTT ENSBTAP00000007819/1-994 EIHWLHPLMT VGEVQDKYEC LHVEAEWRYD LQVRYLPEDF MESLKEDKTT bmy_05088T0/1-917 EIHWLHPQMT VGEVQDKYEC LHMEAEWRYD LQIRYLPEDF MESLKEDRTT BACU015284/1-1009 EIHWLHPQMT VGEVQDKYEC LHMEAEWRYD LQIRYLPEDF MESLKEDRTT 151 200 ENSTTRP00000002224/1-941 LLYFYQQLRN DYMQRYASKV SEGMALQLGC LELRRFFKDM PHNALDKKSN ENSP00000380638/1-1009 LLYFYQQLRN DYMQRYASKV SEGMALQLGC LELRRFFKDM PHNALDKKSN ENSBTAP00000007819/1-994 LLYFYQQLRN DYMQRYASKV SEGMALQLGC LELRRFFKDM PHNALDKKSN bmy_05088T0/1-917 LLYFYQQLRN DYMQRYASKV SEGMALQLGC LELRRFFKDM PHNALDKKSN BACU015284/1-1009 LLYFYQQLRN DYMQRYASKV SEGMALQLGC LELRRFFKDM PHNALDKKSN 201 250 ENSTTRP00000002224/1-941 FELLEKEVGL DLFFPKQMQE NLKPKQFRKM IQQTFQQYAS LREEECVMKF ENSP00000380638/1-1009 FELLEKEVGL DLFFPKQMQE NLKPKQFRKM IQQTFQQYAS LREEECVMKF ENSBTAP00000007819/1-994 LELLEREVGL DLFFPKQMQE NLKPKQFRKM IQQTFQQYAS LREEECVMKF bmy_05088T0/1-917 FELLEKEVGL DLFFPKQMQE NLKPKQFRKM IQQTFQQYAL LREEECVMKF BACU015284/1-1009 FELLEKEVGL DLFFPKQMQE NLKPKQFRKM IQQTFQQYAS LREEECVMKF 251 300 ENSTTRP00000002224/1-941 FNTLAGFANI DQETFRCELI QGWNITVDLV IGPKGIRQLT SQDAKPTCLA ENSP00000380638/1-1009 FNTLAGFANI DQETYRCELI QGWNITVDLV IGPKGIRQLT SQDAKPTCLA ENSBTAP00000007819/1-994 FNTLAGFANI DQETYRCELI QGWNITVDLV IGPKGIRQLT SQDAKPTCLA bmy_05088T0/1-917 FNTLAGFASI DQETYRCELI QGWNITVDLV IGPKGIRQLT SQDAKPTCLA BACU015284/1-1009 FNTLAGFASI DQETYRCELI QGWNITVDLV IGPKGIRQLT SQDAKPTCLA 301 350 ENSTTRP00000002224/1-941 QFKHIKSIRC LLLEEGQAVL QIGIEGAPQS LSIKTSSLAE AENMADLVDG ENSP00000380638/1-1009 EFKQIRSIRC LPLEEGQAVL QLGIEGAPQA LSIKTSSLAE AENMADLIDG ENSBTAP00000007819/1-994 EFKQIKSIRC LPLEEGQAVL QLGIEGAPQS LSIKTSSLAE AENMADLVDG bmy_05088T0/1-917 EFKQIKSIRC LPLEEGQAVL QLGIEGAPQS LSIKTSSLAE AENMADLVDG BACU015284/1-1009 EFKQIKSIRC LPLEEGQAVL QLGIEGVPQS LSIKTSSLAE AENMADLVDG 351 400 ENSTTRP00000002224/1-941 YCRLQGEHKG SLIIRPKK-- ----DGEKRN SLPQIPTLXX XXXXXXXXXX ENSP00000380638/1-1009 YCRLQGEHQG SLIIHPRK-- ----DGEKRN SLPQIPMLNL EARRSHLSES ENSBTAP00000007819/1-994 YCRLQGEHKG SLIIRTKK-- ----DGEKRN SLPQIPTLNL EARRPHLSES bmy_05088T0/1-917 YCRLQGEHKG SLIIRPKKGV FPLEDGEKRN SLPQIPTLNL EARRPHLSES BACU015284/1-1009 YCRLQGEHKG SLIIRAKK-- ----DGEKRN SLPQIPTLNL EARRPHLSES 401 450 ENSTTRP00000002224/1-941 XXXESDIYAE IPDETLRRPG GPQYGIARED VVLNRILGEG FFGEVYEGVY ENSP00000380638/1-1009 CSIESDIYAE IPDETLRRPG GPQYGIARED VVLNRILGEG FFGEVYEGVY ENSBTAP00000007819/1-994 CSIESDIYAE IPDETLRRPG GPQYGIARED VVLNRILGEG FFGEVYEGVY bmy_05088T0/1-917 CSIESDIYAE IPDETLRRPG GPQYGISRED VVLNRILGEG FFGEVYEGVY BACU015284/1-1009 CSIESDIYAE IPDETLRRPG GPQYGIARED VVLNRILGEG FFGEVYEGVY 451 500 ENSTTRP00000002224/1-941 TSHKGEKINV AVKTCKKDCT LDSKEKFVSE AXXXXXXXXX XXXXXXXXXX ENSP00000380638/1-1009 TNHKGEKINV AVKTCKKDCT LDNKEKFMSE AVIMKNLDHP HIVKLIGIIE ENSBTAP00000007819/1-994 TNHKGEVINV AVKTCKKNCT LDNKEKFMSE AVIMKNLDHP HIVKLIGIIE bmy_05088T0/1-917 TSHKGEKINV AVKTCKKDCT QDSKEKFVSE AVIMRNLEHP HIVKLIGIIE BACU015284/1-1009 TSHKGEKINV AVKTCKKDCT QDSKEKFVSE AVIMRNLEHP HIVKLIGIIE 501 550 ENSTTRP00000002224/1-941 XXXTWIVMEL YPYGELGHYL ERNKNCLKVL TLVLYSLQIC KAMAYLESIN ENSP00000380638/1-1009 EEPTWIIMEL YPYGELGHYL ERNKNSLKVL TLVLYSLQIC KAMAYLESIN ENSBTAP00000007819/1-994 EEPTWIIMEL YPYGELGHYL ERNKNSLKVL TLVLYSLQIC KAMAYLESIN bmy_05088T0/1-917 EEPTWIIMEL ---------- ---------- ---------- ---------- BACU015284/1-1009 EEPTWIIMEL YPYGELGHYL ERNKNCLKVL TLVLYSLQIC KAMAYLESIN 551 600 ENSTTRP00000002224/1-941 CVHXXXXXXX XXXXXXXXXX XGDFGLSRYI EDEEYYKASV TRLPIKWMSP ENSP00000380638/1-1009 CVHRDIAVRN ILVASPECVK LGDFGLSRYI EDEDYYKASV TRLPIKWMSP ENSBTAP00000007819/1-994 CVHRDIAVRN ILVASPECVK LGDFGLSRYI EDEEYYKASV TRLPIKWMSP bmy_05088T0/1-917 ----DIAVRN VLVASPECVK LGDFGLSRYI EDEEYYKASV TRLPIKWMSP BACU015284/1-1009 CVHRDIAVRN VLVASPECVK LGDFGLSRYI EDEEYYKASV TRLPIKWMSP 601 650 ENSTTRP00000002224/1-941 ESINFRRFTT ASDVWMFAVC MWEILSFGKQ PFFWLENKDV IGVLEKGDRL ENSP00000380638/1-1009 ESINFRRFTT ASDVWMFAVC MWEILSFGKQ PFFWLENKDV IGVLEKGDRL ENSBTAP00000007819/1-994 ESINFRRFTT ASDVWMFAVC MWEILSFGKQ PFFWLENKDV IGVLEKGDRL bmy_05088T0/1-917 ESINFRRFTT ASDVWMFAVC MWEILSFGKQ PFFWLENKDV IGVLEKGDRL BACU015284/1-1009 ESINFRRFTT ASDVWMFAVC MWEILSFGKQ PFFWLENKDV IGVLEKGDRL 651 700 ENSTTRP00000002224/1-941 PKPDLCPPVL YTLMTRCWDY DPSERPRFTE LVCSLSDIYQ MEKDVAIEQE ENSP00000380638/1-1009 PKPDLCPPVL YTLMTRCWDY DPSDRPRFTE LVCSLSDVYQ MEKDIAMEQE ENSBTAP00000007819/1-994 PKPDLCPPIL YTLMTRCWDY DPSERPRFTE LVCSLSDIYQ MEKDIALEQE bmy_05088T0/1-917 PKPDLCPPVL YTLMTRCWDY DPSERPRFTE LVCSLSDIYQ MEKDITIEQE BACU015284/1-1009 PKPDLCPPVL YTLMTRCWDY DPSERPRFTE LVCSLSDIYQ MEKDVTIEQE 701 750 ENSTTRP00000002224/1-941 RNARYRPPKI LEPTAFQEPP PKPSRPKYRP PPQTNLLAPK LQFQVPEGLC ENSP00000380638/1-1009 RNARYRTPKI LEPTAFQEPP PKPSRPKYRP PPQTNLLAPK LQFQVPEGLC ENSBTAP00000007819/1-994 RNARYRPPKI LEPTAFQEPP PKPSRPKYRP PPQTNLLAPK LQFQVPEGLC bmy_05088T0/1-917 RNARYRPPKI LEPTAFQEPP PKPSRPKYRP PPQTNLLAPK LQFQVPEGLC BACU015284/1-1009 RNARYRPPKI LEPMAFQEPP PKPSRPKYRP PPQTNLLAPK LQFQVPEGLC 751 800 ENSTTRP00000002224/1-941 ASSPTLTSPM EYPSPVNSLH TPPLHRHNVF KRHSMRXXXX XXXXXXXXXX ENSP00000380638/1-1009 ASSPTLTSPM EYPSPVNSLH TPPLHRHNVF KRHSMREEDF IQPSSREEAQ ENSBTAP00000007819/1-994 ASSPTLTSPM EYPSPVNSLH TPPLHRHNVF KRHSMREEDF VRPSSREEAQ bmy_05088T0/1-917 ASSPTLTSPM EYPSPVNSLH TPPLHRHNVF KRHSMREEDF VRPSSREEAQ BACU015284/1-1009 ASSPTLTSPM ECPSPVNSLH TPPLHRHNVF KRHSMREEDF VRPSSREEAQ 801 850 ENSTTRP00000002224/1-941 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDPMVY MNDKSPLTPE ENSP00000380638/1-1009 QLWEAEKVKM RQILDKQQKQ MVEDYQWLRQ EEKSLDPMVY MNDKSPLTPE ENSBTAP00000007819/1-994 QLWEAERLKM RQLLDKQQKQ MVEDYQWLRQ EEKALDPMVY MNDKSPLTPE bmy_05088T0/1-917 QLWEAERVKM RQLLDQQHRQ MVEDHQWLRR EERSLDPMVY MNDKSPLTPE BACU015284/1-1009 QLWEAERVKM RQLLAKQQRQ MVEDYQWLRQ EERSLDPMVY MNDTSPLTPE 851 900 ENSTTRP00000002224/1-941 KEVGYTEFTG PPEKPPRLGV QSIQPTANLD RTHDLVYLNV MELVRAVLDL ENSP00000380638/1-1009 KEVGYLEFTG PPQKPPRLGA QSIQPTANLD RTDDLVYLNV MELVRAVLEL ENSBTAP00000007819/1-994 KEAGYTEFTA PPQKPPRLGA QSIQPTANLD RTDDLVYLNV MELVRAVLDL bmy_05088T0/1-917 KEVGYTEFTG PPEKPPRLGA QSIQPTANLD RTDDLVYLNV MELVRAVLDL BACU015284/1-1009 KEVGYTEFTG PPEKPPRLGA QSIQPTANLD RTDDLVYLNV MELVRAVLDL 901 950 ENSTTRP00000002224/1-941 KNELCQLPPE GYVVVVKNVG LTLRKLIASV DDLLPSLPSS SRTEIEGTQK ENSP00000380638/1-1009 KNELCQLPPE GYVVVVKNVG LTLRKLIGSV DDLLPSLPSS SRTEIEGTQK ENSBTAP00000007819/1-994 KNELCQLPPE GYVVVVKNVG LTLRKLIGSV DDLLPSLPSS SRTEIEGTQK bmy_05088T0/1-917 KNELCQLPPE GYVVVVKNVG LTLRKLIGSV DDLLPSLPSS SRTEIEGTQK BACU015284/1-1009 KNELCQLPPE GYVVVVKNVG LTLRKLIGSV DDLLPSLPSS SRTEIEGTQK 951 1000 ENSTTRP00000002224/1-941 LLNKDLAELI NKMRLAQQNA VTSLSEECKR QMLTASHTLA VDAKNLLDAV ENSP00000380638/1-1009 LLNKDLAELI NKMRLAQQNA VTSLSEECKR QMLTASHTLA VDAKNLLDAV ENSBTAP00000007819/1-994 LLNKDLAELI NKMRLAQQNA VTSLSEECKR QMLTASHTLA VDAKNLLDAV bmy_05088T0/1-917 LLNKDLAELI NKMRLAQQNA VTSLSEECKR QMLTASHTLA VDAKNLLDAV BACU015284/1-1009 LLNKDLAELI NKMRLAQQNA VTSLSEECKR QMLTASHTLA VDAKNLLDAV 1001 1050 ENSTTRP00000002224/1-941 DQAKVLANLA QPLAE ENSP00000380638/1-1009 DQAKVLANLA HPPAE ENSBTAP00000007819/1-994 ---------- ----- bmy_05088T0/1-917 DQAKVLANLA QPPAE BACU015284/1-1009 DQAKVLANLA QPPAE