KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:12 2014 Check: 00 .. Name: ENSP00000415203/1-983 Len: 1143 Check: 5116 Weight: 1.00 Name: ENSBTAP00000007828/1-984 Len: 1143 Check: 7973 Weight: 1.00 Name: ENSTTRP00000014905/1-975 Len: 1143 Check: 1874 Weight: 1.00 Name: bmy_12235T0/1-1078 Len: 1143 Check: 3482 Weight: 1.00 Name: BACU009112/1-1029 Len: 1143 Check: 6260 Weight: 1.00 // 1 50 ENSP00000415203/1-983 ---------- ---------- ---------- ---------- -------MRL ENSBTAP00000007828/1-984 ---------- ---------- ---------- ---------- -------MRL ENSTTRP00000014905/1-975 ---------- ---------- ---------- ---------- -------MRL bmy_12235T0/1-1078 TRGRRAPVWV SRSRLLGGGS LEAEAAVFGR DVTWSPGVRI PARRVGTMRL BACU009112/1-1029 ---------- ---------- ---------- ---------- -------MRL 51 100 ENSP00000415203/1-983 GSGTFATCCV AIEVLGIAVF LRGFFPAPVR SSARAEHGAE PPAPEPSA-- ENSBTAP00000007828/1-984 GSGTFAAGCV VIEVLGVALF LRGFFPAPV- -FSGAERQAE SPAPEPSA-- ENSTTRP00000014905/1-975 GSGTFAACCV VIEVLGVALF LRGFFPAPVC SFSGTEHQTE SPAPEPSA-- bmy_12235T0/1-1078 GSGTFASCCV VIEVLGVALF LRGFFPVPVC SFSGTERPTE SPAPEPSA-- BACU009112/1-1029 GSGTFAACCV VIEVLGVALF LRGFFPVPVC PFSGTEHQTE SPAPEPSAGM 101 150 ENSP00000415203/1-983 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007828/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014905/1-975 ---------- ---------- ---------- ---------- ---------- bmy_12235T0/1-1078 ---------- ---------- ---------- ---------- ---------- BACU009112/1-1029 DRSPGVSVPR APLFPEDPPY ESRLLYFLPR LPDGLFHSGP QPLGSPSYRS 151 200 ENSP00000415203/1-983 ---------- GASSNWTTLP PPLFSKVVIV LIDALRDDFV FGSKGVKFMP ENSBTAP00000007828/1-984 ---------- GASSNWTELP PPLFSKVVIL LIDALRDDFV FGSKGVKFMP ENSTTRP00000014905/1-975 ---------- GAISNWTKLP PPLFSKVVIM LIDALRDDFV FGSKGVKFMP bmy_12235T0/1-1078 ---------- GAISNWTKLP PPLFSKVVIM LIDALRDDFV FGSKGVKFMP BACU009112/1-1029 SLLLCILQVC GAISNWTKLP PPLFSKVVIM LIDALRDDFV FGSKGVKFMP 201 250 ENSP00000415203/1-983 YTTYLVEKGA SHSFVAEAKP PTVTMPRIKA LMTGSLPGFV DVIRNLNSPA ENSBTAP00000007828/1-984 YTTYLVEKGS SLSFVAEAKP PTVTMPRIKA LLTGSLPGFI DVVRNLNSPT ENSTTRP00000014905/1-975 YTTYLVEKGS SHSFVAEAKP PTVTMPRIKA LMTGSLPGFI DVVRNLNSPT bmy_12235T0/1-1078 YTTYLVGKGS SHSFVAEAKP PTVTMPRIKA LMTGSLPGFI DVVRNLNSPT BACU009112/1-1029 YTTYLVEKGS SHSFVAEAKP PTVTMPRIKA LMTGSLPGFI DVVRNLNSPT 251 300 ENSP00000415203/1-983 LLEDSVIRQA KAAGKRIVFY GDETWVKLFP KHFVEYDGTT SFFVSDYTEV ENSBTAP00000007828/1-984 LMEDNVITRA KAAGKRIIFY GDETWVKLFP KHFVEYDGTT SFFVSDYTEV ENSTTRP00000014905/1-975 LLEDNVITRA KAAGKRIIFY GDETWVKLFP KHFVEYDGTT SFFVSDYTEV bmy_12235T0/1-1078 LLEDNVITRA KAAGKRIIFY GDETWVKLFP KHFLEYDGTT SFFVSDYTEV BACU009112/1-1029 LLEDNVITRA KAAGKRILFY GDETWVKLFP KHFLEYDGTT SFFVSDYTEV 301 350 ENSP00000415203/1-983 DNNVTRHLDK VLKRGDWDIL ILHYLGLDHI GHISGPNSPL IGQKLSEMDS ENSBTAP00000007828/1-984 DNNVTRHLDK VLKRQDWDML ILHYLGLDHI GHISGPSSPL VGHKLSEMDS ENSTTRP00000014905/1-975 DDNVTRHLDK VLKRRDWDVL ILHYLGLDHI GHISGPNSPL IGRKLSEMDS bmy_12235T0/1-1078 DDNVTRHLDK VLKRRDWDVL ILHYLGLDHI GHVSGPNSPL IGRKLSEMDS BACU009112/1-1029 DHNVTRHLDK VLKRRDWDVL ILHYLGLDHI GHVSGPSSPL IGRKLSEMDS 351 400 ENSP00000415203/1-983 VLMKIHTSLQ SKERETPLPN LLVLCGDHGM SETGSHGASS TEEVNTPLIL ENSBTAP00000007828/1-984 ILMKIHTALL AEERDPLLPS LLVLCGDHGM SEAGGHGASS MEEVNTALVL ENSTTRP00000014905/1-975 VLMKIHTSLL SEERETLLPN LLVLCGDHGM SEAGGHGASS VEEVNTAMIL bmy_12235T0/1-1078 VLMKIHTSLL SEERETLLPN LLVLCGDHGM SEAGGHGASS VEEVNTALIL BACU009112/1-1029 VLMKIHTSLL SEERETLLPN LLVLCGDHGM SEAGGHGASS VEEVNTALIL 401 450 ENSP00000415203/1-983 ISSAFERKPG DIRHPKHVQQ TDVAATLAIA LGLPIPKDSV GSLLFPVVEG ENSBTAP00000007828/1-984 VSSAFERKPG DVRHPTRVQQ TDLAATLSIG LGLPIPKSNT GGLMFPVVEG ENSTTRP00000014905/1-975 ISSAFERKPX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12235T0/1-1078 ISAAFERKPG DVRHPKYIQQ TDLAATLSIG LGLPIPRSSI GSLIFPVVEG BACU009112/1-1029 ISSAFERKPG DARHPKYIQQ TDLAATLSIG LGLPIPRGSV GSLIFPVVEG 451 500 ENSP00000415203/1-983 RPMREQLRFL HLNTVQLSKL LQENVPSYEK DPGFEQFKMS ERLHGNWIRL ENSBTAP00000007828/1-984 RPMREQLRFL HLNTVQLSKL LQENVPSYNK EPGFEQFKVS ERSHRNWIRL ENSTTRP00000014905/1-975 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XPGFEQFKVS ERLHGNWVRL bmy_12235T0/1-1078 KPMREQLRFL HLNTVQLSKL LQENVPSYKK EPGFEQFKVS ERLHGNWIRL BACU009112/1-1029 KPMREQLRFL HLNTVQLSKL LQENVPSYRK EPGFEQFKVS ERLHGNWIRL 501 550 ENSP00000415203/1-983 YLEEKHSEVL FNLGSKVLRQ YLDALKTLSL SLSAQVAQYD IYSMMVGTVV ENSBTAP00000007828/1-984 YLEENNSEVV FNLGAKVRRQ YLDALRTLKL SLSRRAAQYD VYSMAVGTVL ENSTTRP00000014905/1-975 YLEENSSEVL SNLGSKVRRQ YLDALRALSL SLSRQAAQYD VYSMA----- bmy_12235T0/1-1078 YLEENNSEVL FNLGSKVRRQ YLDALRTLSL SLSRQAAQYD VYSMAAGTVL BACU009112/1-1029 YLEENNSEVL FNLGSKVRRQ YLGALRTLSL SLSRQAAQYD VYSMAAGTVL 551 600 ENSP00000415203/1-983 VLEVLTLLLL SVPQALRRKA ELEVPLSSPG FSLLFYLVIL VLSAVHVIVC ENSBTAP00000007828/1-984 VLEALVLLLL SVPQALSSRA ELDVPLLSPV CSLLFYLLLL ALAALHVVVC ENSTTRP00000014905/1-975 ---VLALLLL SGPRALSGKA ELDVPLPSPA FSLLCYVLPL GLVALHVTVC bmy_12235T0/1-1078 VLEVVALLLL CVPQALSGEA ELDVPLLSPV SSLLFYLLLL ALAALHVVVC BACU009112/1-1029 VLEVVALLLL CVPQALSGKA ELDVPLLSPV SSLLFYLLLL ALAALHVVVC 601 650 ENSP00000415203/1-983 TSAESSCYFC GLSWLAAGGV MVLASALLCV IVSVLTNVLV GGNTPRKNPM ENSBTAP00000007828/1-984 TAADSSCYLC SLPWLAAGGV MTLIAALLCA GMSALTRVFA GGKCLSQNPP ENSTTRP00000014905/1-975 TSAGGTCYLC SLPWLTAGGV MVLISTLLCA VLSALTGMFA GGKRLSKNPP bmy_12235T0/1-1078 TSSDSSCYLC SLPWLTAGGV MVLISTLLCA VVSALTGMFA AGKRLSKNPP BACU009112/1-1029 TSSDSSCYLC SLPWLAAGGV MVLISTLLCA VVSALTGVFA AGRRLSKNPP 651 700 ENSP00000415203/1-983 HPSSRWSELD LLILLGTAGH VLSLGASSFV EEEHQTWYFL VNTLCLALSQ ENSBTAP00000007828/1-984 QSTSRWSELD LLSFLGTVGH VLSLGASSFI EEEHQTWYFL VNTLCLALCH ENSTTRP00000014905/1-975 QCNSRWSELD LLILLGTVGH TLSLGASSFI EEEPQTWYFL VNTLCLALCH bmy_12235T0/1-1078 PSNSRWSELD LLILSGTVGH VLSLGASSFI EEEHQTWYFL VNTLCLALCH BACU009112/1-1029 PSNSRWSELD LLILSGTVGH VLSLGASSFI EEEHQTWYFL VNTLCLALCH 701 750 ENSP00000415203/1-983 ETYRNYFLGD DGEPPCGLCV EQGHDGATAA WQ-DGPGCDV LERDKGHGSP ENSBTAP00000007828/1-984 QIYRKCLLGD DCAPQHCPHT GEEFDGVAVA LQGKRAGPEG WELSRAPADP ENSTTRP00000014905/1-975 EIYRNCFLGD DCAPQSCPHA GEDFDGVAAA PQGKSPGPDV WELDRASRHP bmy_12235T0/1-1078 EIYRNCFVGD DCAPQHCPHA GEEFDRVAAA PQGKSTGPDV WELDRASKHP BACU009112/1-1029 EIYRNCFVGD DCAPQRCPHA GEEFDGVAAA PQGRSTGPDV WELDRASKHP 751 800 ENSP00000415203/1-983 STSEVLRGRE KWMVLASPWL ILACCRLLRS LNQTGVQWAH RPDLGHWLT- ENSBTAP00000007828/1-984 SSLEALRGSE RWMVLASPWL VLACCRLLRS LMSVSASWDH IVAQSFWLTF ENSTTRP00000014905/1-975 SPLGALRGPE RWMVLASPWL ILTCCRLLRS LNQTGVQWAH RPDLGHWLT- bmy_12235T0/1-1078 SPLEALRGPE RWMVLASPWV ILTCCRLLRS LNQTGVQWAH RPDLGHWLT- BACU009112/1-1029 SPLEALRGPE RWMVLASPWV ILSCCRLLRS LNQTGVQWAH RPDLGHWLT- 801 850 ENSP00000415203/1-983 --SSDHKAEL SVLAALSLLV VFVLVQRGCS PVSKAALALG LLGVYCYRAA ENSBTAP00000007828/1-984 HSSSDHKAEL SVLAALSLTM IFVLVQKRCS LTSKVAMAFG LLGIYCYRAA ENSTTRP00000014905/1-975 --SSDHKAEL SVLAAVSLIM IFVLVQKRCS LASKVAMAFG LLGIYCYRVA bmy_12235T0/1-1078 --SSDHKAEL SVLATVSLIM IFVLVQKRCS LASKVAMAFG LLGIYCYRVA BACU009112/1-1029 --SSDHKAEL SVLATVSLIM IFVLVQKRCS LASKVAMAFG LLGIYCYRVA 851 900 ENSP00000415203/1-983 IGSVRFPWRP DSKDISKGII EARFVYVFVL GILFTGTKDL LKSQVIAADF ENSBTAP00000007828/1-984 IGNVLFPWQQ DNKDISKGIT EARFVYVFVL GILFTGAKDL LKSQIIAADF ENSTTRP00000014905/1-975 IGNLLFPWQQ NNKDISKGIT EARFVYVFVL GILFTGTKGL LKSQITADDF bmy_12235T0/1-1078 VGNLLFPWQQ NNKDISKGIT EARFVYVFVL GILFTGTKDL LKSQVTADDV BACU009112/1-1029 IGNLLFPWQQ NNKDISKGIT EARFVYVFVL GILFTGTKDL LKSQIAADDF 901 950 ENSP00000415203/1-983 KLKTVGLWEI YSGLVLLAAL LFRPHNLPVL AFSLLIQTLM TKFIWKPLRH ENSBTAP00000007828/1-984 TARTVGLWEI HSGLVLLATL LLRPHNLPVL VLSLAIQTIM AQFIWRPLRH ENSTTRP00000014905/1-975 TVKTVGLWEI YSGLVLLAAL LLRPHNLPVL ALSLVIQTIM TQFVWRPLRH bmy_12235T0/1-1078 TVKTVGLWEI HSGLVLLAAL LLRPHNLPVL VLSLVIQTIM TQFVWRPLRH BACU009112/1-1029 TVKTVGLWEI YSGSVLLAAL LLRPHNLPVL ALSLVIQTVM THFVWRPLRH 951 1000 ENSP00000415203/1-983 DAAEITVMHY WFGQAFFYF- ---------- ---------- ---------- ENSBTAP00000007828/1-984 DVAEVTVMHY WFGQAFFYF- ---------- ---------- ---------- ENSTTRP00000014905/1-975 DAAEVTVMHY WFGQAFFYF- ---------- ---------- ---------- bmy_12235T0/1-1078 DAAEVTVMHY WFGQAFFYFQ APQGPAEQWA CLMNAGHPCP GAHSPTALRG BACU009112/1-1029 DAAEVTVMHY WFGQAFFYF- ---------- ---------- ---------- 1001 1050 ENSP00000415203/1-983 ---------- --QGNSNNIA TVDISAGFVG LDTYVEIPAV LLTAFGTYAG ENSBTAP00000007828/1-984 ---------- --QGNSNSIA TVDISAGFVG LDAYMEIPAM FLTAFATYSG ENSTTRP00000014905/1-975 ---------- --QGNSNNIA TVDISAGFVG LDAYVEIPAM LLTTFATYTG bmy_12235T0/1-1078 SPPGSAHTVY KLQGNSNSIA TVDISAGFVG LDAYVEIPAM LLTTFATYTG BACU009112/1-1029 ---------- --QGNSNSIA TVDISAGFVG LDAYVEIPAV LLTAFATYTG 1051 1100 ENSP00000415203/1-983 PVLWASHLVH FLSSETRSGS ALSHACFCYA LICSIPVFTY IVLVTSLRYH ENSBTAP00000007828/1-984 PVLWASHLVN FLTSEASSGS ALSHACFCYA LICSIPVSVY IILVTSLRYH ENSTTRP00000014905/1-975 PVLWASHLVN FLTSEASSGS ALSHACFCYA LICSIPVSAY IIFVTSLRYH bmy_12235T0/1-1078 PVLWASHLVN FLTSEASSGS ALSHACFCYA LICSIPVSAY IVLVTSLRYH BACU009112/1-1029 PVLWAGHLVN FLASEASRPA PETQASGTLY LRTKLTSTS- ---MDGVKAS 1101 1150 ENSP00000415203/1-983 LFIWSVFSPK LLYEGMHLLI TAAVCVFFTA MDQTRLTQS- --- ENSBTAP00000007828/1-984 LFIWSVFSPK LLYEGMHLLI TAAVCIFFTA MDQTNTKS-- --- ENSTTRP00000014905/1-975 LFIWSVFSPK LLYEGMHLLI TAAVCVFFTA MDQTNTKS-- --- bmy_12235T0/1-1078 LFIWSVFSPK LLYEGMHLLI TAAVCVFFTA MDQSNTKSYR LSY BACU009112/1-1029 IGFWS----K KARGGSH--- ----CGGHGP KQHEVLD--- ---