KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:12 2014 Check: 00 .. Name: ENSP00000376384/1-560 Len: 984 Check: 15 Weight: 1.00 Name: ENSBTAP00000007831/1-582 Len: 984 Check: 2461 Weight: 1.00 Name: ENSTTRP00000006704/1-974 Len: 984 Check: 2133 Weight: 1.00 Name: bmy_09749T0/1-404 Len: 984 Check: 8554 Weight: 1.00 Name: BACU004787/1-737 Len: 984 Check: 7549 Weight: 1.00 // 1 50 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 VPGRGPLLGS RSDPEHGNAA VQKRHLYPNF LGDKRGAADL LGETNSGNSV bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 MGRSGDTREV SRRPDFGTCG FNTSTSPQVT GKQSPDVDHP PSECPDGRLQ 51 100 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 IFTSVLYPSR PPRPLHPCVR KSGGAVRAGP GAELGLRVQG SRDSGHIWGA bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 QVVTRQGQQR KTLPAGVSLK TFHSCGDPTG ELSPTESTRP PRHRLQSQEA 101 150 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 AAAEASGQRL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXESGMSR bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 ECFHEPSQR- ---------- ---------- ---------- ----QGCGSA 151 200 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- -AEKRPSGDK QPEP------ ---------- ---------- ENSTTRP00000006704/1-974 TARVGVQRRP LEVMMDRGDA VLGAAFAESP QEGGEVWGLL PGPWPVESKG bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 VPLSGPFAAL PVVSRPPWQS TPDASLPDPM QEEHTIVSHE KDDTHRPRDT 201 250 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 PAWACKGPAP LDAGAWQGCA GHGPHCSHFS NFAVLMVSXX XXXXXXXXXX bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 TSAQSDLNPT LPADDSRRYQ GLTRKTCLSS TF-------- ---------- 251 300 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000376384/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007831/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006704/1-974 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000376384/1-560 ---------- -MDLKTVLSL PRYPGEFLHP VVYACTAVML LCLLASFVTY ENSBTAP00000007831/1-582 ---------- -EDLRTVLSL PPSPGELLHP VVYACTAVML LCLLASAATY ENSTTRP00000006704/1-974 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 ---------- -ADLRTVLSL PQSPGEFLHP VVCACTAVML LCLLASAITY 451 500 ENSP00000376384/1-560 IVHQSAIRIS RKGRHTLLNF CFHAALTFTV FAGGINRTKY PILCQAVGIV ENSBTAP00000007831/1-582 IVHQSAIRIS RPGRHTLLNF CLHAALTFSA FAGGINRTRF PTLCQAVGIL ENSTTRP00000006704/1-974 XXXXXTIRIS RKGRHTLLNF CFHAALTFSV FAGGINRTTY PILCQAVGIV bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 VVHQSAIRIS RKGRHALLNF CFHAALTFSV FAGGINRTKY PILCQAVGIV 501 550 ENSP00000376384/1-560 LHYSTLSTML WIGVTARNIY KQVTKKAPLC LDTDQPPYPR QPLLRFYLVS ENSBTAP00000007831/1-582 LHYSTLSTLL WIGVTARNIY KQVTKKAPLC PGAGQPPYPK QPLLRFYLVG ENSTTRP00000006704/1-974 LHYSTLSTML WIGVAARNIY KQVTKKAPLC PGADQPPHPR QPLLXXXXXX bmy_09749T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004787/1-737 LHYSTLSTML WIGVTARNIY KQVTKKAPLC PGADQPPYPK QPLLS----- 551 600 ENSP00000376384/1-560 GGVPFIICGV TAATNIRNYG TEDEDTAYCW MAWEPSLGAF YGPAAIITLV ENSBTAP00000007831/1-582 GGAPLVICGV TAATNIRNYG MEAEDAAYCW MAWEPSLGAF YGPVAFIALV ENSTTRP00000006704/1-974 XXXXXXXXXX XXXXXXXXXX XXXXXXX-CW MAWEPSLGAF YGPATFISLV bmy_09749T0/1-404 ---------- ---------- ---------- MAWEPSLGAF YGPATFISLV BACU004787/1-737 ---------- ---------- --------CW MAWEPSLGAF YGPATFISLV 601 650 ENSP00000376384/1-560 TCVYFLGTYV QLRRHPGRRY ELRTQPEEQR RLATPEGG-- RGIRPGTPPA ENSBTAP00000007831/1-582 TCVYFLGTYV QLRRHPERRY ELRERTEEQQ RLAGPEGG-- PGAPGGTPPA ENSTTRP00000006704/1-974 TCVYFLGTYV QLRRHPERRY ELRERAEEWQ RLAGSEAGQS PGAPRATPPA bmy_09749T0/1-404 TCVYFLGTYV QLRRHPERRY ELRERTEEQQ RLAGPEAGGS PGAPAATPPA BACU004787/1-737 TCVYFLGTYV QLRRHPERRY ELRERTEEQQ RLAGPEAGES PGAPAATPPA 651 700 ENSP00000376384/1-560 HDAPGASVLQ NEHSFQAQLR AAAFTLFLFT ATWAFGALAV SQGHFLDMVF ENSBTAP00000007831/1-582 PDGLAASLLQ NEHSFKAQLR AAAFTLFLFV ATWTFGALAV SQGHVLDMVF ENSTTRP00000006704/1-974 RDALLTSLLQ NEHSFKAQLR AAAFTLFLFV ATWTFGALAV SQGHFLHTIF bmy_09749T0/1-404 HDAPVPSLLQ NEHSFRAQLR AAAFTLFLFV ATWTFGALAV SQGHFLDMIF BACU004787/1-737 HDAPVTSLLQ NEHSFKAQLR AAAFTLFLFV ATWTFGALAV SQGHFLDMIF 701 750 ENSP00000376384/1-560 SCLYGAFCVT LGLFVLIHHC AKREDVWQCW WACCPPRKD- ------AHPA ENSBTAP00000007831/1-582 SCLYGAFCVT LGLFVLIHHC AKRDDVWHCW WSCCPTRRDP HPAKLSTRPA ENSTTRP00000006704/1-974 SCLYGAFCVT LGLFVLIHHC AKREDVWHCW WSCCPSRGD- ------ARPA bmy_09749T0/1-404 SCLYGAFCVT LGLFVLIHHC AKREDVWHCW WSCCPSRGDP HAAKLGARPT BACU004787/1-737 SCLYGAFCVT LGLFVLIHHC AKREDVWHCW WSCCPSRGDP HAAKLGARPT 751 800 ENSP00000376384/1-560 LDANGAALGR AACLH-SPGL GQPRGFAHPP -GPCKMTNLQ AAQGHASCLS ENSBTAP00000007831/1-582 LDANGDALGQ VACLQDSPCP SKALGFGHPS ASHCKMTNLQ ATQGHVSCLS ENSTTRP00000006704/1-974 LDANGDVLSH AACLQDSPRP GKTLGFGHPP AGHCKMTDLQ ATQSHVSCLS bmy_09749T0/1-404 LDANGDVLSH AACLQDSPCP GKTLGFGHLP ASHCKMTNLQ ATQSHVSCLS BACU004787/1-737 LDANGDVLSH AACLQDSPCP GKTLGFGHPP ASHCKMTNLQ ATQSHVSCLS 801 850 ENSP00000376384/1-560 PATPCCAKMH CEPLTADEAH VHLQEEGAFG HDPHLHGCLQ GRTKPPYFSR ENSBTAP00000007831/1-582 PATPCCAQMH CEQLMEDAAH VH--EGDAFE HDTHLHTCVQ GRTKPHYFSR ENSTTRP00000006704/1-974 PATPCCAKMQ CEQLMEDAAH VHVHEEDAFG HDPHRHRCLQ GRTKPHYFSR bmy_09749T0/1-404 PTTPCCAKMP CEQLMEDAAH VHVHEEDAFG RDPHLHRCIQ GRTEPHYFSR BACU004787/1-737 PATPCCAQMP CEQLMEDAAH VHVHEEDAFG HDPHLHRCIQ GRAEPHYFSR 851 900 ENSP00000376384/1-560 H--PAEEPEY AYHIPSSLDG SPRSSRTDSP PSSLDGPAGT HTLACCTQGD ENSBTAP00000007831/1-582 HRAAAAEQEY AYHIPSSLDG SPHSSRSESP PSSLEGPVGP HALACCAQGD ENSTTRP00000006704/1-974 HRAAAAEREY AYHIPSSLDG SPHSSRTDSP ASSLEGPVGP HSLACCAQGD bmy_09749T0/1-404 HQAATAEQEY AYHIPSSLDG SPHSSRTDSP PSSFEGPMGP HSLACCAQGD BACU004787/1-737 HRVAAAEQEY AYHIPSSLDG SPRSSRTDSP PSSLEGPMGP HSLACCAQGD 901 950 ENSP00000376384/1-560 PFPMVTQPEG SDGSPALYSC PTQPGREAAL GPGHLEMLRR TQSLPFGGPS ENSBTAP00000007831/1-582 PFPLVSQPEG SAPSPVLYSC PPRPGREAAR GPARLEMLRR TQSLPFGGPG ENSTTRP00000006704/1-974 PFPLVSQPEG GDASPVLCGC PPRPGGEAAH GPAHLEMLRR TQSLPFGGPG bmy_09749T0/1-404 PFPLVSQPEG GDASPVLYSC PPRPGREAAH GPAHLEMLRR TQSLPFGGPG BACU004787/1-737 PFPLVSQPEG GDASPVLYGC PPRPGREAAH GPARLEVLRR TQSLPFGSPG 951 1000 ENSP00000376384/1-560 QNGLPKGKLL EGLPFGTDGT GNIRTGPWKN ETTV ENSBTAP00000007831/1-582 QNGLLKGDVR DAAPFGSDST GNIRTGPWRN ETTV ENSTTRP00000006704/1-974 QNGLVKGDAR DAAPFGSDST GNIRTRP-RN ETV- bmy_09749T0/1-404 QNGLVKGDAR DAAPFGSDST GNIRTGPWRN ETTV BACU004787/1-737 QDGLVKGDAR GTVPFGSDST GSIRTGPWRN ETTV