KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:16 2014 Check: 00 .. Name: ENSTTRP00000004355/1-956 Len: 1015 Check: 9341 Weight: 1.00 Name: ENSBTAP00000007834/1-1013 Len: 1015 Check: 5058 Weight: 1.00 Name: ENSP00000061240/1-1013 Len: 1015 Check: 1353 Weight: 1.00 Name: bmy_09645T0/1-755 Len: 1015 Check: 7783 Weight: 1.00 Name: BACU018923/1-918 Len: 1015 Check: 6085 Weight: 1.00 // 1 50 ENSTTRP00000004355/1-956 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007834/1-1013 MGLERLSPGM LAWLAATGAV LCAELRVCAG LDYDYTFGGY GEDEAEALDY ENSP00000061240/1-1013 MGLGTLSPRM LVWLVASGIV FYGELWVCAG LDYDYTFDGN EEDKTETIDY bmy_09645T0/1-755 MGLETLSLGM LAWLVAT--- ---------- ---------- ---------- BACU018923/1-918 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004355/1-956 -------VFW GDIALXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGFGDHG ENSBTAP00000007834/1-1013 KDPCKAAVFW GDIALDDEDL NIFQIDRTID LTQNPFGKFG HITGGFGDHG ENSP00000061240/1-1013 KDPCKAAVFW GDIALDDEDL NIFQIDRTID LTQNPFGNLG HTTGGLGDHA bmy_09645T0/1-755 ---------- ---------- ---------- ---------- ---------- BACU018923/1-918 ---------- ---------- ---------- ---------- ----GFGDHG 101 150 ENSTTRP00000004355/1-956 MSKKRGALYQ LIDRIRRIGS GLEQNNTVKE KVPLKFSGQN EKNRVPRAAT ENSBTAP00000007834/1-1013 MSKKRGALYQ LIDRIRRIGS GLEQNNTVKE KLPLKFSGQS EKNRVPRAAT ENSP00000061240/1-1013 MSKKRGALYQ LIDRIRRIGF GLEQNNTVKG KVPLQFSGQN EKNRVPRAAT bmy_09645T0/1-755 ---------- ---------- GAVLCAELGV CAGLDYD--- ---------- BACU018923/1-918 MSKKRGALYQ LIDRIRRIGS GLEQNNTVKG KVPLKFSGQN EKNRVPRAAT 151 200 ENSTTRP00000004355/1-956 SRTERVWPGG VIPYVIGGNF TGSQRAMFKQ AM-HWEKHTC VTFIERGXXX ENSBTAP00000007834/1-1013 SRTERVWPGG VIPYVIGGNF TGSQRAMFKQ AMRHWEKHTC VTFIERGDEE ENSP00000061240/1-1013 SRTERIWPGG VIPYVIGGNF TGSQRAMFKQ AMRHWEKHTC VTFIERSDEE bmy_09645T0/1-755 ---------- ---YTFGGN- ---------- ---------- -------GEE BACU018923/1-918 SRTERVWPGG VIPYIIGGNF TGSQRAMFKQ AMRHWEKHTC VTFIERGDEE 201 250 ENSTTRP00000004355/1-956 XXXXXXYS-L GGCCSYVGRR GNGPQAISIG KNCDKFGIVV HELGHVIGFW ENSBTAP00000007834/1-1013 SYIVFTYR-P CGCCSYVGRR GNGPQAISIG KNCDKFGIVV HELGHVIGFW ENSP00000061240/1-1013 SYIVFTYR-P CGCCSYVGRR GNGPQAISIG KNCDKFGIVV HELGHVIGFW bmy_09645T0/1-755 EAEALDYKDP CKAAVFWGDI ALDDEDLNIF QIDRTIDLTQ NPFGK-FG-- BACU018923/1-918 SYIVFTYR-P CGCCSYVGRR GNGPQAISIG KNCDKFGIVV HELGHVIGFW 251 300 ENSTTRP00000004355/1-956 HEHTRPDRDN HVTIIRENIQ PGQEYNFLKM EPGEVNSLGE RYDFDSIMHY ENSBTAP00000007834/1-1013 HEHTRPDRDN HVTIIRENIQ PGQEYNFLKM EPAEVNSLGE SYDFDSIMHY ENSP00000061240/1-1013 HEHTRPDRDN HVTIIRENIQ PGQEYNFLKM EPGEVNSLGE RYDFDSIMHY bmy_09645T0/1-755 ---------- HTT------- -GQEYNFLKM EPGEVNSLGE RYDFDSIMHY BACU018923/1-918 HEHTRPDRDN HVTIIRENIQ PGQEYNFLKM EPGEVNSLGE RYDFDSIMHY 301 350 ENSTTRP00000004355/1-956 ARNTFSXXXX XXXXXXXXXX XXXXXXXHGQ RTRLSKGDIA QARKLYRCPA ENSBTAP00000007834/1-1013 ARNTFSRGMF LDTILPSRDD NGIRPAI-GQ RTRLSKGDIA QARKLYRCPA ENSP00000061240/1-1013 ARNTFSRGMF LDTILPSRDD NGIRPAI-GQ RTRLSKGDIA QARKLYRCPA bmy_09645T0/1-755 ARNTFSRGMF LDTILPSRDD NGIRPAI-GQ RTRLSKGDIA QARKLYRCPA BACU018923/1-918 ARNTFSRGMF LDTILPSRDD NGIRPAI-GQ RTRLSKGDIA QARKLYRCPA 351 400 ENSTTRP00000004355/1-956 CGETLQESNG NLSSPGFPNG YPSYTHCIWR VSVTAGEKIV LNFTTMDLYK ENSBTAP00000007834/1-1013 CGETLQESNG NLSSPGFPNG YPSYTHCIWR VSVTPGEKIV LNFTTMDLYK ENSP00000061240/1-1013 CGETLQESNG NLSSPGFPNG YPSYTHCIWR VSVTPGEKIV LNFTTMDLYK bmy_09645T0/1-755 CGETLQESNG NLSSPGFPNG YPSYTHCIWR VSVTPGEKIV LNFTTMDLYK BACU018923/1-918 CGETLQESNG NLSSPGFPNG YPSYTHCIWR VSVTPGEKIV LNFTTMDLYK 401 450 ENSTTRP00000004355/1-956 SSLCWYDYIE VRDGYWRKSP LLGRFCGDKL PEVLTSTDSR MWIEFRSSSN ENSBTAP00000007834/1-1013 SSLCWYDYIE VRDGYWRKSP LLGRFCGDKL PEVLTSTESR MWIEFRSSSN ENSP00000061240/1-1013 SSLCWYDYIE VRDGYWRKSP LLGRFCGDKL PEVLTSTDSR MWIEFRSSSN bmy_09645T0/1-755 SSLCWYDYIE VRDGYWRKSP LL-------- ---------- ---------- BACU018923/1-918 SSLCWYDYLE VRDGYWRKSP LLGRFCGDKL PEVLTSTDSR MWIEFRSSSN 451 500 ENSTTRP00000004355/1-956 WVGKGFAAIY EAICGGEIRK NEGQIQSPNY PDDYRPMKEC VWKIAVSEDC ENSBTAP00000007834/1-1013 WVGKGFAAIY EAICGGEIHK NEGQIQSPNY PDDYRPMKEC VWKIAVSEDC ENSP00000061240/1-1013 WVGKGFAAVY EAICGGEIRK NEGQIQSPNY PDDYRPMKEC VWKITVSESY bmy_09645T0/1-755 ---------- -AICGGEIRK NEGQIQSPNY PDDYRAMKEC VWKIAVSEDC BACU018923/1-918 WVGKGFAAIY EAICGGEIRK NEGQIQSPNY PDDYRPMKEC VWKIAVSEDC 501 550 ENSTTRP00000004355/1-956 YVGLTFQAFE IERHDNCAYD YLEVRDGTSE NSPLIGRFCG YDKPEDIRST ENSBTAP00000007834/1-1013 YVGLIFQAFE IERHDNCAYD YLEVRDGTNE SSPLIGRFCG YDKPEDIRST ENSP00000061240/1-1013 HVGLTFQSFE IERHDNCAYD YLEVRDGTSE NSPLIGRFCG YDKPEDIRST bmy_09645T0/1-755 YVGLTFQAFE IERHDNCAYD YLEVRDGTSE NSPLIGRFCG YDKPEDIRST BACU018923/1-918 YVGLTFQAFE IERHDNCAYD YLEVRDGTSE NSPLIGRFCG YDKPEDIRST 551 600 ENSTTRP00000004355/1-956 SNTLWMKFVS DGTVNKAGFA ANFFKEEDEC AKPDRGGCEQ RCLNTLGSYQ ENSBTAP00000007834/1-1013 SNTLWMKFVS DGTVNKAGFA ANFFKEEDEC AKPDRGGCEQ HCLNTLGSYQ ENSP00000061240/1-1013 SNTLWMKFVS DGTVNKAGFA ANFFKEEDEC AKPDRGGCEQ RCLNTLGSYQ bmy_09645T0/1-755 SNTLWMKFVS DGTVNKAGFA ANFFKEEDEC AKPDRGGCEQ RCLNTLGSYQ BACU018923/1-918 SNTLWMKFVS DGTVNKAGFA ANFFKEEDEC AKPDRGGCEQ RCLNTLGSYQ 601 650 ENSTTRP00000004355/1-956 CSCEPGYELG PDKRTCEAAC GGLLTKLNGT ITTPGWPKEY PPNKHCVWQV ENSBTAP00000007834/1-1013 CACEPGYELG PDRRTCEAAC GGLLTKLNGT ITTPGWPKEY PPNKHCIWQV ENSP00000061240/1-1013 CACEPGYELG PDRRSCEAAC GGLLTKLNGT ITTPGWPKEY PPNKNCVWQV bmy_09645T0/1-755 CSCEPGYELG PDKRTCEAAC GGLLTKLNGT ITTPGWPKEY PPNKHCVWQV BACU018923/1-918 CSCEPGYELG PDKRTCEAAC GGLLTKLNGT ITTPGWPKEY PPNKHCVWQV 651 700 ENSTTRP00000004355/1-956 VAPTQYRISM KFEFFELEGN EVCKYDYVEI WSGLSSESKL HGKFCGAEVP ENSBTAP00000007834/1-1013 VAPTQYRISV KFEFFELEGN EVCKYDYVEI WSGLSSESKL HGKYCGAEVP ENSP00000061240/1-1013 VAPTQYRISV KFEFFELEGN EVCKYDYVEI WSGLSSESKL HGKFCGAEVP bmy_09645T0/1-755 VAPTQYRISM KFEGFELEGN EVCKYDYVEI WSGLSSESKL HGKFCGAEVP BACU018923/1-918 VAPTQYRISM KFEFFELEGN EVCKYDYVEI WSGLSSEPKL HGKFCGAEVP 701 750 ENSTTRP00000004355/1-956 EVITSQFNNM RIEFKSDNTV SKKGFKAHFF SDKDECSKDN GGCQHECVNT ENSBTAP00000007834/1-1013 EVITSHFNNM RIEFKSDNTV SKKGFKAHFF SDKDECSKDN GGCQHECVNT ENSP00000061240/1-1013 EVITSQFNNM RIEFKSDNTV SKKGFKAHFF SDKDECSKDN GGCQHECVNT bmy_09645T0/1-755 EVITSQFNNM RIEFKSDNTV SKKGFKAHFF S--------- ---------- BACU018923/1-918 DVITSQFNNM RIEFKSDNTV SKKGFKAHFF SDKDECSKDN GGCQHECVNT 751 800 ENSTTRP00000004355/1-956 MGSYMCQCRN GFVLHENKHD CKEAECEQKI HSPSGFITSP NWPDKYPSRK ENSBTAP00000007834/1-1013 MGSYLCQCRN GFVLHENKHD CKEAECEQKI HSPSGFITSP NWPDKYPSRK ENSP00000061240/1-1013 MGSYMCQCRN GFVLHDNKHD CKEAECEQKI HSPSGLITSP NWPDKYPSRK bmy_09645T0/1-755 ---------- ---------- ---AECEQKI HSPSGFITSP NWPDKYPSRK BACU018923/1-918 MGSYMCQCRN GFVLHENKHD CKEAECEQKI HSPSGFITSP NWPDKYPSRK 801 850 ENSTTRP00000004355/1-956 ECTWEISATP GHRIKLIFSE FEIEQHQECA YDHLEVFDGE TEKSPILGRL ENSBTAP00000007834/1-1013 ECTWEISATP GHRVKLAFTE FEIEQHQECA YDHLEVFDGE TEKSPVLGRL ENSP00000061240/1-1013 ECTWEISATP GHRIKLAFSE FEIEQHQECA YDHLEVFDGE TEKSPILGRL bmy_09645T0/1-755 ECTWEISATP GHRIKLVFSE FEIEQHQECA YDHLEVFDGE TEKSPILGRL BACU018923/1-918 ECTWEISATP GHRIKLVFSE FEIEQHQECA YDHLEVFDGE TEKSPILGRL 851 900 ENSTTRP00000004355/1-956 CGNKIPEPLV ATGNKMFVRF VSDASVQRKG FQATHSTECG GRLKVESKPR ENSBTAP00000007834/1-1013 CGNKIPEPLV ATGNNMFVRF VSDASVQRKG FQAAHSTECG GRLKVESKPR ENSP00000061240/1-1013 CGNKIPDPLV ATGNKMFVRF VSDASVQRKG FQATHSTECG GRLKAESKPR bmy_09645T0/1-755 CGNKIPEPLV ATGNKMFVRF VSDASVQRKG FQATHSTECG GRLKVESKPR BACU018923/1-918 CGNKIPEPLV ATGNKMFVRF VSDASVQRKG FQATHSTECG GRLKVESKPR 901 950 ENSTTRP00000004355/1-956 DLYSHAQFGD NNYPGQVDCE WLLVSERGSR LELSFQIFEV EEEADCGYDY ENSBTAP00000007834/1-1013 DLYSHAQFGD NNYPGQVDCE WLLVSERGSR LELSFQIFEV EEEADCGYDY ENSP00000061240/1-1013 DLYSHAQFGD NNYPGQVDCE WLLVSERGSR LELSFQTFEV EEEADCGYDY bmy_09645T0/1-755 DLYSHAQFGD NNYPAQVDCE WLLVSERGSR LELSFQIFEV EEEADCGYDY BACU018923/1-918 DLYSHAQFGD NNYPGQVDCE WLLVSERGSR LELSFQIFEV EEEADCGYDY 951 1000 ENSTTRP00000004355/1-956 LELFDGLDST AVGLGRFCGS GPPEETYSIG DTVLIHFHTD DTISKKGFHI ENSBTAP00000007834/1-1013 VELFDGLDST AVGLGRFCGS GPPEEIYSIG DTVLIHFHTD DTISKKGFHI ENSP00000061240/1-1013 VELFDGLDST AVGLGRFCGS GPPEEIYSIG DSVLIHFHTD DTINKKGFHI bmy_09645T0/1-755 VELFDGLDST AVGLGRFCGS GPPEEIYSIG DTVLIHFHTD DTISKKGFHI BACU018923/1-918 VELFDGLDST AVGLGRFCGS GPPEEIYSIG DTVLIHFHTD DTISKKGFHI 1001 1050 ENSTTRP00000004355/1-956 RYKSIRYPDT THTKN ENSBTAP00000007834/1-1013 RYKSIRYPDS THTKK ENSP00000061240/1-1013 RYKSIRYPDT THTKK bmy_09645T0/1-755 RYKSIRYPDT SHTKK BACU018923/1-918 RYKSIRYPDT THTK-