KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:18 2014 Check: 00 .. Name: ENSTTRP00000012586/1-881 Len: 1209 Check: 447 Weight: 1.00 Name: bmy_08228T0/1-758 Len: 1209 Check: 4607 Weight: 1.00 Name: ENSBTAP00000007848/1-816 Len: 1209 Check: 2066 Weight: 1.00 Name: BACU012455/1-1092 Len: 1209 Check: 7269 Weight: 1.00 Name: ENSP00000239027/1-838 Len: 1209 Check: 691 Weight: 1.00 // 1 50 ENSTTRP00000012586/1-881 MPAQRPASSG GSVAPDVVEQ PETAVITPAM VEEEEQLEAA GLERERKMLE bmy_08228T0/1-758 MPAQRPASSG GSVAPDMVEQ PETAVITPAM VEEEEQLEAA GLERERKMLE ENSBTAP00000007848/1-816 MPAQRPANSG ---------- ---------- -EKRTRLKAA EIENKRNLKG BACU012455/1-1092 MPAQRPASSG GSVAPDMVEQ PETAVITPAM VEEEEQLEAA GLERERKMLE ENSP00000239027/1-838 MPAERPAGSG GSEAPAMVEQ LDTAVITPAM LEEEEQLEAA GLERERKMLE 51 100 ENSTTRP00000012586/1-881 KARMSWDRES MDIRYRRLQH LLEKSNIYSK FLLTKMEQQQ LEEQKKKEKL bmy_08228T0/1-758 K--------- ---------- ---------- ---------- --EQKKKEKL ENSBTAP00000007848/1-816 KARMSWDRES VDIRYRRLQH LLEKSNIYSK FLLTKMEQQQ LEEQKKKEKL BACU012455/1-1092 KARMSWDRES MDIRYRRLQH LLEKSNIYSK FLLTKMEQQQ LE-------- ENSP00000239027/1-838 KARMSWDRES TEIRYRRLQH LLEKSNIYSK FLLTKMEQQQ LEEQKKKEKL 101 150 ENSTTRP00000012586/1-881 ERKKESLKVT KGKNSIDASE ENAVMRKKRG REDESYSISE VMSKEEILSV bmy_08228T0/1-758 ERKKESLKVT KGKNSIDASE ENAVMRKKRG REDESYNISE VMSK------ ENSBTAP00000007848/1-816 ERKKESLKVT KDKNSIDASE ENAVIKKKRG REDESYNISE VMSKEEILSV BACU012455/1-1092 ---------- -GKNSIDASE ENAVMRKKRG REDESYNISE VMSKEEILSV ENSP00000239027/1-838 ERKKESLKVK KGKNSIDASE EKPVMRKKRG REDESYNISE VMSKEEILSV 151 200 ENSTTRP00000012586/1-881 AKKSKKENED E-SSSSNLCV EDLQKNKDSN SKIKDRLSQT VRQNTKFFFD bmy_08228T0/1-758 --------ED E-SSSSNLCV EDLQKNKDSN SKIKDRLSQT VRQNTKFFFD ENSBTAP00000007848/1-816 AKKNKKENED E-SSSSNMCV EDLQKNKDSN SKIKDRLSQT VRQNTKFFFD BACU012455/1-1092 AKKSKKENED E-SSSSNLCV EDLQKNKDSN SKIKDRLSQT VRQNTKFFFD ENSP00000239027/1-838 AKKNKKENED ENSSSTNLCV EDLQKNKDSN SIIKDRLSET VRQNTKFFFD 201 250 ENSTTRP00000012586/1-881 PVRKCNGQPV PFQQPKHFTG GVMRWYQVEG MEWLRMLWEN GINGILADEM bmy_08228T0/1-758 PVRKCNGQPV PFQQPKHFTG GVMRWYQVEG MEWLRMLWEN GINGILADEM ENSBTAP00000007848/1-816 PVRKCNGQPV PFQQPKHFTG GVMRWYQVEG MEWLRMLWEN GINGILADEM BACU012455/1-1092 PVRKCNGQPV PFQQPKHFTG GVMRWYQVEG MEWLRMLWEN GINGILADEM ENSP00000239027/1-838 PVRKCNGQPV PFQQPKHFTG GVMRWYQVEG MEWLRMLWEN GINGILADEM 251 300 ENSTTRP00000012586/1-881 GLGKTVQCIA TIALMIQRGV PGPFLVCGPL STLPNWMA-F QRFTPXXXXX bmy_08228T0/1-758 GLGKTVQCIA TIALMIQRGV PGPFLVCGPL STLPNWMAEF QRFTPEIPTM ENSBTAP00000007848/1-816 GLGKTVQCIA TIALMIQRGV PGPFLVCGPL STLPNWMAEF KRFTPEIPTM BACU012455/1-1092 GLGKTVQCIA TIALMIQRGV PGPFLVCGPL STLPNWMAEF QRFTPEIPTM ENSP00000239027/1-838 GLGKTVQCIA TIALMIQRGV PGPFLVCGPL STLPNWMAEF KRFTPDIPTM 301 350 ENSTTRP00000012586/1-881 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08228T0/1-758 LYHGTQQERR KLVKHIHKRK GTLQIHPVVI TSFEIAMRDR NALQ------ ENSBTAP00000007848/1-816 LYHGTQQERR ILVKHIHERK GTLQIHPVVI TSFEIAMRDR TTLQNCYWKY BACU012455/1-1092 LYHGTQQERR KLVKHIHKRK GTLQIHPVVI TSFEIAMRDR NALQNCYWKY ENSP00000239027/1-838 LYHGTQEERQ KLVRNIYKRK GTLQIHPVVI TSFEIAMRDR NALQHCYWKY 351 400 ENSTTRP00000012586/1-881 XXXXXXXXXX XXXXXXXXXX XXXHADNKLL LTGTPLQNNL SELWSLLNFL bmy_08228T0/1-758 ---------- NMKCRLIREL KRFNADNKLL LTGTPLQNNL SELWSLLNFL ENSBTAP00000007848/1-816 LIVDEGHRIK NMKCRLIREL KRFNADNKLL LTGTPLQNNL SELWSLLNFL BACU012455/1-1092 LIVDEGHRIK NMKCRLIREL KRFNADNKLL LTGTPLQNNL SELWSLLNFL ENSP00000239027/1-838 LIVDEGHRIK NMKCRLIREL KRFNADNKLL LTGTPLQNNL SELWSLLNFL 401 450 ENSTTRP00000012586/1-881 LPDVFDDLKS FESWFDITSL SETAEDIIAK EREQNVLHML HQXXXXXXXX bmy_08228T0/1-758 LPDVFDDLKS FESWFDITSL SETAEDIIAK EREQN----- ---------- ENSBTAP00000007848/1-816 LPDVFDDLKS FESWFDITSL SETAEDIIAK EREQNVLHML HQ-------- BACU012455/1-1092 LPDVFDDLKS FESWFDITSL SETAEDIIAK EREQNVLHML HQ-------- ENSP00000239027/1-838 LPDVFDDLKS FESWFDITSL SETAEDIIAK EREQNVLHML HQ-------- 451 500 ENSTTRP00000012586/1-881 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLRRLKS bmy_08228T0/1-758 ---------- ---------- ---------- --------IL TPFLLRRLKS ENSBTAP00000007848/1-816 ---------- ---------- ---------- --------IL TPFLLRRLKS BACU012455/1-1092 ---------- ---------- ---------- --------IL TPFLLRRLKS ENSP00000239027/1-838 ---------- ---------- ---------- --------IL TPFLLRRLKS 501 550 ENSTTRP00000012586/1-881 DVALEVPPKR EVVVYAPLSK KQEIF-TAIV NRTIANMFGS SEKETVELSP bmy_08228T0/1-758 DVALEVPPKR EVVVYAPLSK KQEIFYTAIV NRTIANMFGS SEPNTAR--- ENSBTAP00000007848/1-816 DVALEVPPKR EVVVYAPLSK KQEIFYTAIV NRTIANMFGS SEKETVELSP BACU012455/1-1092 DVALEVPPKR EVVVYAPLSK KQEIFYTAIV NRTIANMFGS SEKETVELSP ENSP00000239027/1-838 DVALEVPPKR EVVVYAPLSK KQEIFYTAIV NRTIANMFGS SEKETIELSP 551 600 ENSTTRP00000012586/1-881 TGRPKRRTRK SIDYSKIDDF PNELEKLISQ IQPEVDRERA VVETNIPIES bmy_08228T0/1-758 -GRP------ ---------- ---------- ------RKVA VVETNIPIES ENSBTAP00000007848/1-816 TGRPKRRTRK SVDYSKIDDF PNELEKLISQ IQPEVDRERT IVETSVPIES BACU012455/1-1092 TGRPKRRTRK SIDYSKIDDF PNELEKLISQ IQPEVDRERA VVETNIPIES ENSP00000239027/1-838 TGRPKRRTRK SINYSKIDDF PNELEKLISQ IQPEVDRERA VVEVNIPVES 601 650 ENSTTRP00000012586/1-881 EVNLKLQNIM MLLRKCCNHP YLIEYPIDPV TQEFKIDEEL VTNSGKFLIL bmy_08228T0/1-758 EVNLKLQNIM MLLRKCCNHP YLIEYPIDPV TQEFKIDEEL VTNSGKFLIL ENSBTAP00000007848/1-816 EVNLKLQNIM MLLRKCCNHP YLIEYPIDPV TQEFKVDEEL VTNSGKFLIL BACU012455/1-1092 EVNLKLQNIM MLLRKCCNHP YLIEYPIDPV TQEFKIDEEL VTNSGKFLIL ENSP00000239027/1-838 EVNLKLQNIM MLLRKCCNHP YLIEYPIDPV TQEFKIDEEL VTNSGKFLIL 651 700 ENSTTRP00000012586/1-881 DRMLPELKTR GHKVLLFSQM TRMLDILIDY CHFRNFNFSR LDGSMSYSER bmy_08228T0/1-758 DRMLPELKTR GHKVLLFSQM TRMLDILMDY CHFRNFNFSR LDGSMSYSER ENSBTAP00000007848/1-816 DRMLPELKTR GHKVLLFSQM TRMLDILMDY CHFRNFNFSR LDGSMSYSER BACU012455/1-1092 DRMLPELKTR GHK------- ---------- ---------- ---------- ENSP00000239027/1-838 DRMLPELKKR GHKVLLFSQM TSMLDILMDY CHLRDFNFSR LDGSMSYSER 701 750 ENSTTRP00000012586/1-881 EKNMHSFNTD PDVFIFLVST RAGGLGINLT AADTVIIYDS DWNPQSDLQA bmy_08228T0/1-758 EKNMHSFNTD PDVFIFLVST RAGGLGINLT AADTVIIYDS DWNPQSDLQA ENSBTAP00000007848/1-816 EKNIHSFNTD PDVFIFLVST RAGGLGINLT AADTVIIYDS DWNPQSDLQA BACU012455/1-1092 ---MHSFNTD PDVFIFLVST RAGGLGINLT AADTVIIYDS DWNPQSDLQA ENSP00000239027/1-838 EKNMHSFNTD PEVFIFLVST RAGGLGINLT AADTVIIYDS DWNPQSDLQA 751 800 ENSTTRP00000012586/1-881 QDRCHRIGQT KPVVVYRLVT ANTIDQKIVE RAAAKRKLEK LIIHKNHFKG bmy_08228T0/1-758 QDRCHRIGQT KPVVVYRLVT ANTIDQKIVE RAAAKRKLEK LIIHKILI-- ENSBTAP00000007848/1-816 QDRCHRIGQT RPVVVYRLVT ANTIDQKIVE RAAAKRKLEK LIIHKNHFKG BACU012455/1-1092 QDRCHRIGQT KPVVVYRLVT ANTIDQKIVE RAAAKRKLEK LIIHKNHFKG ENSP00000239027/1-838 QDRCHRIGQT KPVVVYRLVT ANTIDQKIVE RAAAKRKLEK LIIHKNHFKG 801 850 ENSTTRP00000012586/1-881 GQSGLNQSKN FLDPKELMEL LKSRDYEREV KGSREKVISD KDLELLLDRS bmy_08228T0/1-758 ----YHIDVN ILFPY----- -------REV KGSREKVI-- ---------- ENSBTAP00000007848/1-816 GQSGLNQSKN FLDPKELMEL LKSRDYEREV KGSREKVISD KDLELLLDRS BACU012455/1-1092 GQSGLNQSKN FLDPKELMEL LKSRDYEREV KGSREKVISD KDLELLLDRS ENSP00000239027/1-838 GQSGLNLSKN FLDPKELMEL LKSRDYEREI KGSREKVISD KDLELLLDRS 851 900 ENSTTRP00000012586/1-881 DLL------- ---------- ---------- ---------- ---------- bmy_08228T0/1-758 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007848/1-816 DLL------- ---------- ---------- ---------- ---------- BACU012455/1-1092 DLLGSGSSTV APEAESPIQL LPWPAGPHHT VDITELGSAQ NHSCDRTKKA ENSP00000239027/1-838 DLI------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000012586/1-881 DQMNASG--- ---------- ---------- ---------- ---------- bmy_08228T0/1-758 NQMNASG--- ---------- ---------- ---------- ---------- ENSBTAP00000007848/1-816 DQMNASG--- ---------- ---------- ---------- ---------- BACU012455/1-1092 TKADVSGGDW EKESSGKGQL PTGPTPLPIL GNILQLDVKD ISKSLTNVCN ENSP00000239027/1-838 DQMNASG--- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000012586/1-881 ---------- ---------- ---------- ---------- ---------- bmy_08228T0/1-758 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007848/1-816 ---------- ---------- ---------- ---------- ---------- BACU012455/1-1092 NFPALMDYLP GSHNKVLKIF AYVKSYVLEK IKEHQAFLGI NNPRDFIDCF ENSP00000239027/1-838 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000012586/1-881 PIK------- EKM------- ---------- ---------- -GIFKIL--- bmy_08228T0/1-758 PIK------- EKM------- ---------- ---------- -GIFKIL--- ENSBTAP00000007848/1-816 PVK------- EKM------- ---------- ---------- -GIFKIL--- BACU012455/1-1092 PIKMEQEKHN QQMEFTFENL IAAVTDLFGA GTEKTNTTLR YGLLLLLKYR ENSP00000239027/1-838 PIK------- EKM------- ---------- ---------- -GIFKIL--- 1051 1100 ENSTTRP00000012586/1-881 ---------- ---------- ---------- ---------- ---------- bmy_08228T0/1-758 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007848/1-816 ---------- ---------- ---------- ---------- ---------- BACU012455/1-1092 EVTAKVQKEI DCVIGRHQSP CMQDRSHMPY MDAVVHEIQR YTDLIPTNLP ENSP00000239027/1-838 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000012586/1-881 ---------- ---------- ---------E NSEDSSPE-- ---------- bmy_08228T0/1-758 ---------- ---------- ---------E NSEDSSPELL SNGGWIFLCF ENSBTAP00000007848/1-816 ---------- ---------- ---------E NSEDSSSE-- ---------- BACU012455/1-1092 HAVTRDVKFR NCFSPRGTTI VTLLSSVLHD DKEFPNPE-- ---------V ENSP00000239027/1-838 ---------- ---------- ---------E NSEDSSPE-- ---------- 1151 1200 ENSTTRP00000012586/1-881 ---------- ---------- ---------- ---------- ---------- bmy_08228T0/1-758 FKEKQTQITP RLPSDNLFLL ERFLRSNEAK SIGIGLSSRN LRCWDSKILV ENSBTAP00000007848/1-816 ---------- ---------- ---------- ---------- ---------- BACU012455/1-1092 FDPVHFLDES GNFKKSDYFM AFSAAHLDEQ SGGVSTKING NWKWKRAVII ENSP00000239027/1-838 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000012586/1-881 ------CLF bmy_08228T0/1-758 YQLMPGKSD ENSBTAP00000007848/1-816 ------CLF BACU012455/1-1092 WECMMKCLM ENSP00000239027/1-838 ------CLF