KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:21 2014 Check: 00 .. Name: ENSTTRP00000011015/1-1328 Len: 1372 Check: 7682 Weight: 1.00 Name: ENSP00000325377/1-1336 Len: 1372 Check: 9963 Weight: 1.00 Name: ENSBTAP00000007859/1-1336 Len: 1372 Check: 7886 Weight: 1.00 Name: bmy_10447T0/1-1129 Len: 1372 Check: 3911 Weight: 1.00 Name: BACU009913/1-1335 Len: 1372 Check: 4980 Weight: 1.00 // 1 50 ENSTTRP00000011015/1-1328 MATEIGSPPR FFHMPRFQHQ APRQLFYKRP DFAQQQAMQQ LTFDGKRMRK ENSP00000325377/1-1336 MATEIGSPPR FFHMPRFQHQ APRQLFYKRP DFAQQQAMQQ LTFDGKRMRK ENSBTAP00000007859/1-1336 MATEIGSPPR FFHMPRFQHQ APRQLFYKRP DFAQQQAMQQ LTFDGKRMRK bmy_10447T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU009913/1-1335 MATEIGSPPR FFHMPRFQHQ APRQLFYKRP DFAQQQAMQQ LTFDGKRMRK 51 100 ENSTTRP00000011015/1-1328 AVNQK----- PTIIHL--NR IWQRDQRDMR AIQPDAGYYN DLVPPIGMLN ENSP00000325377/1-1336 AVNRKTIDYN PSVIKYLENR IWQRDQRDMR AIQPDAGYYN DLVPPIGMLN ENSBTAP00000007859/1-1336 AVNRKTIDYN PSVIKYLENR IWQRDQRDMR AIQPDAGYYN DLVPPIGMLN bmy_10447T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU009913/1-1335 AVNRKTIDYN PSVIKYLENR IWQRDQRDMR AIQPDAGYYN DLVPPIGMLN 101 150 ENSTTRP00000011015/1-1328 NPMNAVTTKF VRTSTNKVKC PVFVVRWTPE GRRLVTGASS GEFTLWNGLT ENSP00000325377/1-1336 NPMNAVTTKF VRTSTNKVKC PVFVVRWTPE GRRLVTGASS GEFTLWNGLT ENSBTAP00000007859/1-1336 NPMNAVTTKF VRTSTNKVKC PVFVVRWTPE GRRLVTGASS GEFTLWNGLT bmy_10447T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU009913/1-1335 NPMNAVTTKF VRTSTNKVKC PVFVVRWTPE GRRLVTGASS GEFTLWNGLT 151 200 ENSTTRP00000011015/1-1328 FNFETILQAH DSPVRAMTWS HNDMWMLTAD HGGYVKYWQS NMNNVKMFQA ENSP00000325377/1-1336 FNFETILQAH DSPVRAMTWS HNDMWMLTAD HGGYVKYWQS NMNNVKMFQA ENSBTAP00000007859/1-1336 FNFETILQAH DSPVRAMTWS HNDMWMLTAD HGGYVKYWQS NMNNVKMFQA bmy_10447T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU009913/1-1335 FNFETILQAH DSPVRAMTWS HNDMWMLTAD HGGYVKYWQS NMNNVKMFQA 201 250 ENSTTRP00000011015/1-1328 HKEAIREASF SPTDNKFATC SDDGTVRIWD FLRCHEERIL RXXXXXXXXX ENSP00000325377/1-1336 HKEAIREASF SPTDNKFATC SDDGTVRIWD FLRCHEERIL RGHGADVKCV ENSBTAP00000007859/1-1336 HKEAIREASF SPTDNKFATC SDDGTVRIWD FLRCHEERIL RGHGADVKCV bmy_10447T0/1-1129 ---------- ---------- ---------- ---------- --HGADVKCV BACU009913/1-1335 HKEAIREASF SPTDNKFATC SDDGTVRIWD FLRCHEERIL RGHGADVKCV 251 300 ENSTTRP00000011015/1-1328 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXHAHKNT VMEVKLNLNG ENSP00000325377/1-1336 DWHPTKGLVV SGSKDSQQPI KFWDPKTGQS LATLHAHKNT VMEVKLNLNG ENSBTAP00000007859/1-1336 DWHPTKGLVV SGSKDSQQPI KFWDPKTGQS LATLHAHKNT VMEVKLNLNG bmy_10447T0/1-1129 DWHPTKGLVV SGSKDSQQPI KFWDPKTGQS LATLHAHKNT VMEVKLNLNG BACU009913/1-1335 DWHPTKGLVV SGSKDSQQPI KFWDPKTGQS LATLHAHKNT VMEVKLNLNG 301 350 ENSTTRP00000011015/1-1328 NWLLTASRDH LCKLFDIRNL KEELQVFRGH KKEATAVAWH PVHEGLFASG ENSP00000325377/1-1336 NWLLTASRDH LCKLFDIRNL KEELQVFRGH KKEATAVAWH PVHEGLFASG ENSBTAP00000007859/1-1336 NWLLTASRDH LCKLFDIRNL KEELQVFRGH KKEATAVAWH PVHEGLFASG bmy_10447T0/1-1129 NWLLTASRDH LCKLFDIRNL KEELQVFRGH KKEATAVAWH PVHEGLFASG BACU009913/1-1335 NWLLTASRDH LCKLFDIRNL KEELQVFRGH KKEATAVAWH PVHEGLFASG 351 400 ENSTTRP00000011015/1-1328 GSDGSLLFWH VGVEKEVGGM EMAHEGMIWS LAWHPLGHIL CSGSNDHTSK ENSP00000325377/1-1336 GSDGSLLFWH VGVEKEVGGM EMAHEGMIWS LAWHPLGHIL CSGSNDHTSK ENSBTAP00000007859/1-1336 GSDGSLLFWH VGVEKEVGGM EMAHEGMIWS LAWHPLGHIL CSGSNDHTSK bmy_10447T0/1-1129 GSDGSLLFWH VGVEKEVGGM EMAHEGMIWS LAWHPLGHIL CSGSNDHTSK BACU009913/1-1335 GSDGSLLFWH VGVEKEVGGM EMAHEGMIWS LAWHPLGHIL CSGSNDHTSK 401 450 ENSTTRP00000011015/1-1328 FWTRNRPGDK MRDRYNLNLL PGMSEDGVEY DDLEPNSLAV IPGMGIPEQL ENSP00000325377/1-1336 FWTRNRPGDK MRDRYNLNLL PGMSEDGVEY DDLEPNSLAV IPGMGIPEQL ENSBTAP00000007859/1-1336 FWTRNRPGDK MRDRYNLNLL PGMSEDGVEY DDLEPNSLAV IPGMGIPEQL bmy_10447T0/1-1129 FWTRNRPGDK MRDRYNLNLL PGMSEDGVEY DDLEPNSLAV IPGMGIPEQL BACU009913/1-1335 FWTRNRPGDK MRDRYNLNLL PGMSEDGVEY DDLEPNSLAV IPGMGIPEQL 451 500 ENSTTRP00000011015/1-1328 KLAMEQEQMG KDESNEIEMT IPGLDWGMEE VMQKDQKKVP QKKVPYAKPI ENSP00000325377/1-1336 KLAMEQEQMG KDESNEIEMT IPGLDWGMEE VMQKDQKKVP QKKVPYAKPI ENSBTAP00000007859/1-1336 KLAMEQEQMG KDESNEIEMT IPGLDWGMEE VMQKDQKKVP QKKVPYAKPI bmy_10447T0/1-1129 KLAMEQEQMG KDESNEIEMT IPGLDWGMEE VMQKDQKKVP QKKVPYAKPI BACU009913/1-1335 KLAMEQEQMG KDESNEIEMT IPGLDWGMEE VMQKDQKKVP QKKVPYAKPI 501 550 ENSTTRP00000011015/1-1328 PAQFQQAWMQ NKVPIPAPNE VLNDRKEDIK LEEKKKTQAE IEQEMATLQY ENSP00000325377/1-1336 PAQFQQAWMQ NKVPIPAPNE VLNDRKEDIK LEEKKKTQAE IEQEMATLQY ENSBTAP00000007859/1-1336 PAQFQQAWMQ NKVPIPAPNE VLNDRKEDIK LEEKKKTQAE IEQEMATLQY bmy_10447T0/1-1129 PAQFQQAWMQ NKVPIPAPNE VLNDRKEDIK LEEKKKTQAE IEQEMATLQY BACU009913/1-1335 PAQFQQAWMQ NKVPIPAPNE VLNDRKEDIK LEEKKKTQAE IEQEMATLQY 551 600 ENSTTRP00000011015/1-1328 TNPQLLEQLK IERLAQKQAE QIQPPPSSGT PLLGPQPFPG QGPMSQIPQG ENSP00000325377/1-1336 TNPQLLEQLK IERLAQKQVE QIQPPPSSGT PLLGPQPFPG QGPMSQIPQG ENSBTAP00000007859/1-1336 TNPQLLEQLK IERLAQKQAE QIQPPPSSGT PLLGPQPFPG QGPMSQIPQG bmy_10447T0/1-1129 TNPQLLEQLK IERLAQKQAE QIQPPPSSGT PLLGPQPFPG QGPMSQIPQG BACU009913/1-1335 TNPQLLEQLK IERLAQKQAE QIQPPPSSGT PLLGPQPFPG QGPMSQIPQG 601 650 ENSTTRP00000011015/1-1328 FQQPHPSQQM PMNMAQMGPP GPQGQFRPPG PQGQMGPQGP PLHQGGGGPQ ENSP00000325377/1-1336 FQQPHPSQQM PMNMAQMGPP GPQGQFRPPG PQGQMGPQGP PLHQGGGGPQ ENSBTAP00000007859/1-1336 FQQPHPSQQL SMNMAQMGPP GPQGQFRPPG PQGQMGPQGP PLHQGGGGPQ bmy_10447T0/1-1129 FQQPHPSQQM PMNMAQMGPP GPQGQFRPPG PQGQMGPQGP PLHQGGGGPQ BACU009913/1-1335 FQQPHPSQQM PMNMAQMGPP GPQGQFRPPG PQGQMGPQGP PLHQGGGGPQ 651 700 ENSTTRP00000011015/1-1328 GFMGPQGPQG PPQGLPRPQD MHGPQGMQRH PGPHGPLGPQ GPPGPQGTSG ENSP00000325377/1-1336 GFMGPQGPQG PPQGLPRPQD MHGPQGMQRH PGPHGPLGPQ GPPGPQGSSG ENSBTAP00000007859/1-1336 GFMGPQGPQG PPQGLPRPQD MHGPQGIQRH PGPHGPLGPQ GPPGPQGNAG bmy_10447T0/1-1129 GFMGPQGPQG PPQGLPRPQD MHGPQGMQRH PGPHGPLGPQ GPPGPQGSSG BACU009913/1-1335 GFMGPQGPQG PPQGLPRPQD MHGPQGMQRH PGPHGPLGPQ GPPGPQGSSG 701 750 ENSTTRP00000011015/1-1328 PQGHMGPQGP PGPQGHIGPQ GPPGPQGHLG PQG-PGTQGM QGPPGPRGMQ ENSP00000325377/1-1336 PQGHMGPQGP PGPQGHIGPQ GPPGPQGHLG PQGPPGTQGM QGPPGPRGMQ ENSBTAP00000007859/1-1336 PQGHMGPQGP PGPQGHIGPQ GPPGPQGHLG PQGPPGTQGM QGPPGPRGMQ bmy_10447T0/1-1129 PQGHMGPQGP PGPQGHIGPQ GPPGPQGHLG PQG-PGTQGM QGPPGPRGMQ BACU009913/1-1335 PQGHMGPQGP PGPQGHIGPQ GPPGPQGHLG PQG-PGTQGM QGPPGPRGMQ 751 800 ENSTTRP00000011015/1-1328 GPPHPHGMQG GPGSQGIQGP VSQGPLMGLN PRGMQGPPGP RENQGPAPQG ENSP00000325377/1-1336 GPPHPHGIQG GPGSQGIQGP VSQGPLMGLN PRGMQGPPGP RENQGPAPQG ENSBTAP00000007859/1-1336 GPPHPHGIQG GPGSQGIQGP VSQGPLMGLN PRGMQGPPGP RENQGPAPQG bmy_10447T0/1-1129 GPPHPHGMQG GPGSQGIQGP VSQGPLMGLN PRGMQGPPGP RENQGPAPQG BACU009913/1-1335 GPPHPHGMQG GPGSQGIQGP VSQGPLMGLN PRGMQGPPGP RENQVPAPQG 801 850 ENSTTRP00000011015/1-1328 MMLGHPPQEM RGPHPPSGLL GHGPQEMRGP QEMRGMQGPP PQGSMMGPPQ ENSP00000325377/1-1336 MIMGHPPQEM RGPHPPGGLL GHGPQEMRGP QEIRGMQGPP PQGSMLGPPQ ENSBTAP00000007859/1-1336 MMLGHPPQEM RGPHPPSGLL GHGPQEMRGP QEMRGMQGPP PQGSMLGPPQ bmy_10447T0/1-1129 MMLGHPPQEM RGPHPPSGLL GHGPQEMRGP QEMRGMQGPP PQGSMLGPPQ BACU009913/1-1335 MMLGHPPQEM RGPHPPSGLL GHGPQEMRGP QEMRGMQGPP PQGSMLGPPQ 851 900 ENSTTRP00000011015/1-1328 ELRGPPGSQG QQGPPQGSLG PPPQGGMQGP PGPQGQQNPA RGPHPSQGPI ENSP00000325377/1-1336 ELRGPPGSQS QQGPPQGSLG PPPQGGMQGP PGPQGQQNPA RGPHPSQGPI ENSBTAP00000007859/1-1336 ELRGPPGSQG QQGPPQGSLG PPPQGGMQGP PGPQGQQNPA RGPHPSQGPI bmy_10447T0/1-1129 ELRGPPGSQG QQGPPQGSLG PPPQGGMQGP PGPQGQQNPA RGPHPSQGPI BACU009913/1-1335 ELRGPPGSQG QQGPPQGSLG PPPQGGMQGP PGPQGQQNPA RGPHPSQGPI 901 950 ENSTTRP00000011015/1-1328 PFQQQKTALL GDGPRAPFNQ EGQNAGPPPL IPGLGQQGAQ GRIPPLNPGQ ENSP00000325377/1-1336 PFQQQKTPLL GDGPRAPFNQ EGQSTGPPPL IPGLGQQGAQ GRIPPLNPGQ ENSBTAP00000007859/1-1336 PFQQQKTALL GDGPRAPFNQ EGQNAGPPPL IPGLGQQGAQ GRIPPLNPGQ bmy_10447T0/1-1129 PFQQQKTALL GDGPRAPFNQ EGQNAGPPPL IPGLGQQGAQ GRIPPLNPGQ BACU009913/1-1335 PFQQQKTALL GDGPRAPFNQ EGQNAGPPPL IPGLGQQGAQ GRLPPLNPGQ 951 1000 ENSTTRP00000011015/1-1328 GPGPNKGDSR GPPNHHMGPM SERRHEQSSG PEHGPERGPF RGGQDCRGPP ENSP00000325377/1-1336 GPGPNKGDSR GPPNHHMGPM SERRHEQSGG PEHGPERGPF RGGQDCRGPP ENSBTAP00000007859/1-1336 GPGPNKGDSR GPPNHHMGPM SERRHEQSSG PEHGPERGPF RGSQDCRGPP bmy_10447T0/1-1129 GPGPNKGDSR GPPNHHMGPM SERRHEQSSG PEHGPERGPF RGGQDCRGPP BACU009913/1-1335 GPGPHKGDSR GPPNHHMGPM SERRHEQSSG PEHGPERGPF RGGQDCRGPP 1001 1050 ENSTTRP00000011015/1-1328 DRRGPHPDFP DDFSRPDDFH PDKRFGHRLR EFEGRGGPLP QEEKWRRGGP ENSP00000325377/1-1336 DRRGPHPDFP DDFSRPDDFH PDKRFGHRLR EFEGRGGPLP QEEKWRRGGP ENSBTAP00000007859/1-1336 DRRGPHPEFP DDFSRPDDFH PDKRFGHRLR EFEGRGGPLP QEEKWRRGGP bmy_10447T0/1-1129 DRRGPHPDFP DDFSRPDDFH PDKRFGHRLR EFEGRGGPLP QEEKWRRGGP BACU009913/1-1335 DRRGPHPDFP DDFSRPDDFH PDKRFGHRLR EFEGRGGPLP QEEKWRRGGP 1051 1100 ENSTTRP00000011015/1-1328 GPPFPPDHRE FSEGDGRGAA RGPPGAWEGR RPGDERFPRD PEDPRFRGRR ENSP00000325377/1-1336 GPPFPPDHRE FSEGDGRGAA RGPPGAWEGR RPGDERFPRD PEDPRFRGRR ENSBTAP00000007859/1-1336 GPPFPPDHRE FSEGDARGAA RGPPGAWEGR RPGDDRFPRD PEDPRFRGRR bmy_10447T0/1-1129 GPPFPPDHRE FSEGDGRGAA RGPPGAWEGR RPGDERFPRD PEDPRFRGRR BACU009913/1-1335 GPPFPPDHRE FSEGDGRGAA RGPPGAWEGR RPGDERFPRD PEDPRFRGRR 1101 1150 ENSTTRP00000011015/1-1328 EESFRRGAPP RHEGRAPPRG RDGFPGPEDF GPEENFDASD ETARGRDLRG ENSP00000325377/1-1336 EESFRRGAPP RHEGRAPPRG RDGFPGPEDF GPEENFDASE EAARGRDLRG ENSBTAP00000007859/1-1336 EESFRRGAPP RHEGRAPPRG RDGFPGPEDF GPEENFDASD ETARGRDLRG bmy_10447T0/1-1129 EESFRRGAPP RHEGRAPPRG RDGFPGPEDF GPEENFDASD ETARGRDLRG BACU009913/1-1335 EESFRRGAPP RHEGRAPPRG RDGFPGPEDF GPEENFDASD ETARGRDLRG 1151 1200 ENSTTRP00000011015/1-1328 RGRGTPR--- ---------- ---------- ---------- ---GGRKGLL ENSP00000325377/1-1336 RGRGTPR--- ---------- ---------- ---------- ---GGRKGLL ENSBTAP00000007859/1-1336 RGRGTPR--- ---------- ---------- ---------- ---GGRKGLL bmy_10447T0/1-1129 RGRGTPRGEL RTPGLGRTGV ERWVVVDTPE IVCECGVAVF YCVGGRKGLL BACU009913/1-1335 RGRGTPR--- ---------- ---------- ---------- ---GGRKGLL 1201 1250 ENSTTRP00000011015/1-1328 PTPDEFPRFE GGRKPDSWDG NREPGPGHEH FRDAPRPDHP PHDGHSPASR ENSP00000325377/1-1336 PTPDEFPRFE GGRKPDSWDG NREPGPGHEH FRDTPRPDHP PHDGHSPASR ENSBTAP00000007859/1-1336 PTPDEFPRFE GGRKPDSWDG NREPGPGHEH FRDAPRPDHP PHDGHSPASR bmy_10447T0/1-1129 PTPDEFPRFE GGRKPDSWDG NREPGPGHEH FRDAPRPDHP PHDGHSPASR BACU009913/1-1335 PTPDEFPRFE GGRKPDSWDG NREPGPGHEH FRDAPRPDHP PHDGHSPASR 1251 1300 ENSTTRP00000011015/1-1328 ERSSSLQGMD MASLPPRKRP WHDGPGTSEH REMEAPGGPS EDRGGKGRGG ENSP00000325377/1-1336 ERSSSLQGMD MASLPPRKRP WHDGPGTSEH REMEAPGGPS EDRGGKGRGG ENSBTAP00000007859/1-1336 ERSSSLQGMD MASLPPRKRP WHDGPGTSEH REMDAPGGPS EDRGGKGRGG bmy_10447T0/1-1129 ERSSSLQGMD MASLPPRKRP WHDGPGTSEH REMEAPGGPS EDRGGKGRGG BACU009913/1-1335 ERSSSLQGMD MASLPPRKRP WHDGPGTSEH REMEAPGGPS EDRGGKGRGG 1301 1350 ENSTTRP00000011015/1-1328 PGPSQRVPKS GRSSSLDGDH HDGYHRDEPF GGPPGSGTPS RGGRSGSNWG ENSP00000325377/1-1336 PGPAQRVPKS GRSSSLDGEH HDGYHRDEPF GGPPGSGTPS RGGRSGSNWG ENSBTAP00000007859/1-1336 PGPSQRVPKS GRSSSLDGDH HDGYHRDEPF GGPPGSGTPS RGGRSGSNWG bmy_10447T0/1-1129 PGPSQRVPKS GRSSSLDGDH HDGYHRDEPF GGPPGSGTPS RGGRSGSNWG BACU009913/1-1335 PGPSQRVPKS GRSSSLDGDH HDGYHRDEPF GGPPGSGTPS RGGRSGSNWG 1351 1400 ENSTTRP00000011015/1-1328 RGSNMNSGPP RRGASRGGGR GR ENSP00000325377/1-1336 RGSNMNSGPP RRGASRGGGR GR ENSBTAP00000007859/1-1336 RGSNMNSGPP RRGASRGGGR GR bmy_10447T0/1-1129 RGSNMNSGPP RRGASRGGGR GR BACU009913/1-1335 RGSNMNSGPP RRGASRGGGR GR