KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:25 2014 Check: 00 .. Name: ENSP00000468927/1-449 Len: 494 Check: 6175 Weight: 1.00 Name: ENSBTAP00000007881/1-382 Len: 494 Check: 7893 Weight: 1.00 Name: ENSTTRP00000001608/1-415 Len: 494 Check: 4894 Weight: 1.00 Name: bmy_15831T0/1-322 Len: 494 Check: 1062 Weight: 1.00 Name: BACU018519/1-422 Len: 494 Check: 1870 Weight: 1.00 // 1 50 ENSP00000468927/1-449 --MASALRPP RVPKPKGVLP SHYYESFLEK KGPCDRDYKK FWAGLQGLTI ENSBTAP00000007881/1-382 --MALALSPP RVPKPKSALP LHYYESFLEK KGPRDRDYKK FWAGLQGLTL ENSTTRP00000001608/1-415 --MALALRPP RVPKPKRSLP SHYHESFLEK KGPRDRDYKK FWAGLQGLTL bmy_15831T0/1-322 MALALALRPP RVPKPKSSLP SHYHESFLEK KGPRDRDYKK FWAGLQGLTL BACU018519/1-422 --MALALRPP RVPKPKSGLP SHYHESFLEK KGPRDRDYKK FWAGLQGLTL 51 100 ENSP00000468927/1-449 YFYNSNRDFQ HVEKLNLGAF EKLTDEIPWG SSRDPGTHFS LILRDQEIKF ENSBTAP00000007881/1-382 YFYNSNRDTK HVEKLDLGGF VKLTDEAPWG NSHDPSTHFC LVLRNQEIKF ENSTTRP00000001608/1-415 YFYNSNRDSQ HMEKLDLGTF VKLTDEAPWG SSHDRGTHFC LVLRNQEIKF bmy_15831T0/1-322 YFYNSNRDSQ YMEKLDLGVF VKLTDEAPWG SSHDPGTHFC LVLRNQEIKF BACU018519/1-422 YFYNSYRDSQ YMEKLDLGVF VKLTDESPWG SSHDPGTHFC LVLRHQEIKF 101 150 ENSP00000468927/1-449 KVETLECREM WKGFILTVVE LRVPTDLTLL PGHLYMMSEV LAKEEARRAL ENSBTAP00000007881/1-382 KVESLESREM WKGFILTVVE LRVPSNLTLL PGHLYMMSEA LAKEEARRVL ENSTTRP00000001608/1-415 KVESLESREM WKGFILMVVE LRVPSNLNLL PGHLYMMAEV LAKEEARRAL bmy_15831T0/1-322 K--------- ---------- LRVPSNLTLL PGHLYMMAEA LAKEEARRAL BACU018519/1-422 KVESLESREM WKGFILTVVE LRVPSNLTLL PGHLYMMAEA LAKEEARRAL 151 200 ENSP00000468927/1-449 ETPSCFLKVS RLEAQLLLER YPECGNLLLR PSGDGADGVS VTTRQMHNGT ENSBTAP00000007881/1-382 EMPSCFLKVS RLEAQLLLER YPECGNLLLR PSGDGTDGVS VTTLQTLNGT ENSTTRP00000001608/1-415 EMPSXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXT bmy_15831T0/1-322 EMPS------ ---------- ---------- ---------- ---------T BACU018519/1-422 EMPSMWRGQC AGEQ---VGV RPSMVAGPGR GAGHFLSSPR PLTRPCPCRT 201 250 ENSP00000468927/1-449 HVVRHYKVKR EGPKYVIDVE QPFSCTSLDA VVNYFVSHTK KALVPFLLDE ENSBTAP00000007881/1-382 PMVRHYKVKR EGAKYVIDVE EPFSCTSLEA VVNYFVSYSN KALVPFLLDE ENSTTRP00000001608/1-415 PVVRHYRVKR EGPKYVIDVE EPFSCTSLDA VVNYFVSHSN KQLMPFLLDD bmy_15831T0/1-322 QVVRHYKVKR EGPKYVIDVE EPFSCTSLDE VVNYFVSHSN KKLMPFLLDD BACU018519/1-422 PVVQHYKVKR EGPKYVIDVK EPFSCTSLDA VVNYFVSHSN KKLMPFLLDD 251 300 ENSP00000468927/1-449 DYEKVLGYVE ADKENGENVW V------APS APGPG---PA PCTGGPKPL- ENSBTAP00000007881/1-382 DYDKVIG--- ---------- ---------- --------PA PPKGGPKQLP ENSTTRP00000001608/1-415 DYEKVIGYVE ADKENGESVW V------APS APGPG---PA APRGGPKQLP bmy_15831T0/1-322 DYEKVIG--- ---------- ---------- --------PE PPRGGPKQLP BACU018519/1-422 DYEKVIGYVE ADKENGESVW VTASAPSAPS APGPGGVCPA PPRGGPKQLP 301 350 ENSP00000468927/1-449 ----SPASSQ DKLPPLPPLP NQEENYVTPI GDGPAVDYEN QDVASSSWPV ENSBTAP00000007881/1-382 PTSITPAPSL DK---LPPLP DQDNNYVIPI GDTPAASYMN EDVPSPSQLV ENSTTRP00000001608/1-415 PSSITPVSSQ DK---LPPLL NQDENYVIPI GDDPAANYVN GDVPSPSRPV bmy_15831T0/1-322 PSSIAPVSSQ DK---LPPLL NQDENYVIPN GDAPAANYVN EDVPSPSRPV BACU018519/1-422 PSSIAPVSSQ DK---LPPLL NQDENYVIPT GDAPAANYVN QDVPSPSRPV 351 400 ENSP00000468927/1-449 ILKPKKLPKP PAKLPKPPV- GPKPVEKGFH HVAQAGLELL TSSDPPTSAS ENSBTAP00000007881/1-382 VPKPRRLVKL QAKLPKPPT- VPKS------ ---------- ---------- ENSTTRP00000001608/1-415 VPKPRKLAMF QAKPPKPPI- VPKSL----- ---------- ---------- bmy_15831T0/1-322 VPKPRKLAMF QAEPPKSPI- V--------- ---------- ---------- BACU018519/1-422 VPKPRKLAMF QAKPPIVPMS ASLSL----- ---------- ---------- 401 450 ENSP00000468927/1-449 QSAGITGVSH HTWPHLSSLP EP-KVFNGGL GRKLPVSSAQ PLF-PTAGLA ENSBTAP00000007881/1-382 ---------- ---------- EP-KGLNSGP AKKLAASSAQ AFS-PTTGLA ENSTTRP00000001608/1-415 ---------- ----HLPSPP EPKKGLNSGL ARKLPVSSAQ ASSSPTTGLA bmy_15831T0/1-322 ---------- ---------- ---------- ---------- ----PKSGLA BACU018519/1-422 ---------- ----HLPSPP EPKKGLNSGL ARKLAVSSAQ AFSSPTTGLA 451 500 ENSP00000468927/1-449 DMTAELQKKL EKRRALEH-- ---------- ---------- ---- ENSBTAP00000007881/1-382 DVTAELEEKL QKRRALE--- ---------- ---------- ---- ENSTTRP00000001608/1-415 DVTAELKGKL QRRLVLQQA- ---------- ---------- ---- bmy_15831T0/1-322 DVTAELKEKL QRRLALEHAA ECTGDQRANL QVWRISQADP SSQN BACU018519/1-422 DVTAELKGKL QRRLALEHA- ---------- ---------- ----