KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:29 2014 Check: 00 .. Name: ENSP00000358983/1-900 Len: 901 Check: 3508 Weight: 1.00 Name: ENSTTRP00000007919/1-895 Len: 901 Check: 3662 Weight: 1.00 Name: ENSBTAP00000007904/1-901 Len: 901 Check: 9423 Weight: 1.00 Name: bmy_15420T0/1-881 Len: 901 Check: 110 Weight: 1.00 Name: BACU012367/1-901 Len: 901 Check: 6422 Weight: 1.00 // 1 50 ENSP00000358983/1-900 MESCYNPGLD GIIEYDDFKL NSSIVEPKEP APETADGPYL VIVEQPKQRG ENSTTRP00000007919/1-895 MDSCYDPGLD GIIEYDDFKF NPSMVGPKEP APETADGPYL VIVEQPKQRG ENSBTAP00000007904/1-901 MDSCYDPGLD GIIEYDDFKF NPSIVEPKEP APETADGPYL VIVEQPKQRG bmy_15420T0/1-881 MDSCYDPGLD GIIEYDDFKF NPTIVQPKEP APETADGPYL VIVEQPKQRG BACU012367/1-901 MDSCYDPGLD GIIEYDDFKF NPSIVQPKEP APETADGPYL VIVEQPKQRG 51 100 ENSP00000358983/1-900 FRFRYGCEGP SHGGLPGASS EKGRKTYPTV KICNYEGPAK IEVDLVTHSD ENSTTRP00000007919/1-895 FRFRYGCEGP SHGGLPGASS EKGRKTYPTV KICNYEGPAK IEVDLVTHSD ENSBTAP00000007904/1-901 FRFRYGCEGP SHGGLPGASS EKGRKTYPTV KICNYEGPAK IEVDLVTHSD bmy_15420T0/1-881 FRFRYGCEGP SHGGLPGASS EKGRKTYPTV KICNYEGPAK IEVDLVTHSD BACU012367/1-901 FRFRYGCEGP SHGGLPGASS EKGRKTYPTV KICNYEGPAK IEVDLVTHSD 101 150 ENSP00000358983/1-900 PPRAHAHSLV GKQCSELGIC AVSVGPKDMT AQFNNLGVLH VTKKNMMGTM ENSTTRP00000007919/1-895 PPRAHAHSLV GKQCSELGVC AVSVGPKDMT AQFNNLGVLH VT-PDMMEIM ENSBTAP00000007904/1-901 PPRAHAHSLV GKQCSELGVC AVSVGPKDMT AQFNNLGVLH VTKKNMMEIM bmy_15420T0/1-881 PPRAHAHSLV GKQCSELGVC AVSVGPKDMT AQFNNLGVLH VTKKNMMEIM BACU012367/1-901 PPRAHAHSLV GKQCSELGVC AVSVGPKDMT AQFNNLGVLH VTKKNMMEIM 151 200 ENSP00000358983/1-900 IQKLQRQRLR SRPQGLTEAE QRELEQEAKE LKKVMDLSIV RLRFSAFLRA ENSTTRP00000007919/1-895 I-KLQRQRLR SRPQGLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000007904/1-901 IQKLQRQRLR SRPQGLTEAE RRELEQEAKE LKKVMDLSIV RLRFSAFLRA bmy_15420T0/1-881 IQKLQRQRLR SRPQGLTEAE RRELEQEAKE LKKVMDLSIV RLRFSAFLRA BACU012367/1-901 IQKLQRQRLR SRPQGLTEAE RRELEQEAKE LKKVMDLSIV RLRFSAFLRA 201 250 ENSP00000358983/1-900 SDGSFSLPLK PVISQPIHDS KSPGASNLKI SRMDKTAGSV RGGDEVYLLC ENSTTRP00000007919/1-895 XXXXXXXXXX XXXXXXXXXX XSPGASNLKI SRMDKTAGSV RGGDEVYLLC ENSBTAP00000007904/1-901 SDGSFSLPLK PVISQPIHDS KSPGASNLKI SRMDKTAGSV RGGDEVYLLC bmy_15420T0/1-881 ---------- ---------- KSPGASNLKI SRMDKTAGSV RGGDEVYLLC BACU012367/1-901 SDGSFSLPLK PVISQPIHDS KSPGASNLKI SRMDKTAGSV RGGDEVYLLC 251 300 ENSP00000358983/1-900 DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE ENSTTRP00000007919/1-895 DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE ENSBTAP00000007904/1-901 DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE bmy_15420T0/1-881 DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE BACU012367/1-901 DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE 301 350 ENSP00000358983/1-900 RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF ENSTTRP00000007919/1-895 RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF ENSBTAP00000007904/1-901 RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF bmy_15420T0/1-881 RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF BACU012367/1-901 RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF 351 400 ENSP00000358983/1-900 GGGSHMGGGS GGAAGGYGGA -GGGGSLGFF PSSLAYSPYQ SGAGPMGCYP ENSTTRP00000007919/1-895 GGGSHMGGGS GGSAGGYGGA -GGGGSLGFF SSSLAYSPYQ SGAAPMGCYP ENSBTAP00000007904/1-901 GGGSHMGGGS GGSAGGYGGA GGGGGSLGFF PSSLAYSPYQ SGAAPMGCYP bmy_15420T0/1-881 GGGSHMGGGS GGSAGGYGGA GGGGGSLGFF SSSLAYSPYQ SGAAPMGCYP BACU012367/1-901 GGGSHMGGGS GGSAGGYGGA GGGGGSLGFF SSSLAYSPYQ SGAAPMGCYP 401 450 ENSP00000358983/1-900 GGGGGAQMAA TVPSRDSGEE AAEPSAPSRT PQCEPQAPEM LQRAREYNAR ENSTTRP00000007919/1-895 GGGGGAQMAS EAPSVDAGEE AAELSAPSGT LQRE-QAPEL LHRAREYNTR ENSBTAP00000007904/1-901 GGGGGAQMAA ETPSVDAGEE AAEPSAPPGT PQREQQTPEL LHRAREYNAR bmy_15420T0/1-881 GGGGGAQMAS EAPSVDAGEE AAELSAPSGT LQREQQAPEL LHRAREYNAR BACU012367/1-901 GGGGGAQMAS EAPSVDAGEE AAEPSAPSGT LQREQQAPEL LHRAREYNAR 451 500 ENSP00000358983/1-900 LFGLAQRSAR ALLDYGVTAD ARALLAGQRH LLTAQDENGD TPLHLAIIHG ENSTTRP00000007919/1-895 LFGLAQRSAR ALLDYGVTAD ARALLAGQRH LLTAQDENGD TPLHLAIIHG ENSBTAP00000007904/1-901 LFGLAQRSAR ALLDYGVTAD ARSLLAGQRH LLTAQDENGD TPLHLAIIHG bmy_15420T0/1-881 LFGLAQRSAR ALLDYGVTAD ARALLAGQRH LLTAQDENGD TPLHLAIIHG BACU012367/1-901 LFGLAQRSAR ALLDYGVTAD ARALLAGQRH LLTAQDENGD TPLHLAIIHG 501 550 ENSP00000358983/1-900 QTSVIEQIVY VIHHAQDLGV VNLTNHLHQT PLHLAVITGQ TSVVSFLLRV ENSTTRP00000007919/1-895 QTSVIEQIAH VIYHAPHLGV VNLTNHLHQT PLHLAVITGQ TSVVSFLLQV ENSBTAP00000007904/1-901 QTTVIEQIAH VIYHAPHLGV VNITNHLHQT PLHLAVITGQ TKVVSFLLQV bmy_15420T0/1-881 QTSVIEQIAH VIYHAPHLGV VNLTNHLHQT PLHLAVITGQ TSVVSFLLQV BACU012367/1-901 QTSVIEQIAH VIYHAPHLGV VNLTNHLHQT PLHLAVITGQ TSVVSFLLQV 551 600 ENSP00000358983/1-900 GADPALLDRH GDSAMHLALR AGAGAPELLR ALLQSGAPAV PQLLHMPDFE ENSTTRP00000007919/1-895 GADPALLDRH GDSAVHLALR ARASAPDVLR TLLRSGVPSM PQLLHLPDFE ENSBTAP00000007904/1-901 GADPALLDRH GDSAVHLALR AGASAPDMLC ALLRSGVPAM PQLLHVPDFE bmy_15420T0/1-881 GADPALLDRH GDSAVHLALR ARASAPDLLR TLLRSGVPSM PQLLHVPDFE BACU012367/1-901 GADPALLDRH GDSAVHLALR ARASAPDLLR TLLRSGVPSM PQLLHVPDFE 601 650 ENSP00000358983/1-900 GLYPVHLAVR ARSPECLDLL VDSGAEVEAT ERQGGRTALH LATEMEELGL ENSTTRP00000007919/1-895 GLYPVHLAVR ARSPECLDLL VDNGAEVEAA ERQGGRTALH LATEMEELGL ENSBTAP00000007904/1-901 GLYPVHLAVR ARSPECLDLL VESGAEVEAA ERQGGRTALH LATEMEELGL bmy_15420T0/1-881 GLYPVHLAVR ARSPECLDLL VDNGAEVEAA ERQGGRTALH LATEMEELGL BACU012367/1-901 GLYPVHLAVR ARSPECLDLL VDNGAEVEAA ERQGGRTALH LATEMEELGL 651 700 ENSP00000358983/1-900 VTHLVTKLRA NVNARTFAGN TPLHLAAGLG YPTLTRLLLK AGADIHAENE ENSTTRP00000007919/1-895 VTHLVTKLRA NVNARTFAGN TPLHLAAGLG -PTLTRLLLK -GADIHAENE ENSBTAP00000007904/1-901 VTHLVTKLRA NVNARTFAGN TPLRAEGGKG APSLIDYLLA PGADVHAENE bmy_15420T0/1-881 VTHLVTKLRA NVNARTFAGN TPLHLAAGLG SPTLTRLLLK AGADIHAENE BACU012367/1-901 VTHLVTKLRA NVNARTFAGN TPLHLAAGLG SPTLTRLLLK AGADIHAENE 701 750 ENSP00000358983/1-900 EPLCPLPSPP TSDSDSDSEG PEKDTRSSFR GHTPLDLTCS TKVKTLLLNA ENSTTRP00000007919/1-895 EPLCPLPSPP TSGSDSDSEG PERDTRGSFR GHTPLDLTRS SKVKTLLLNA ENSBTAP00000007904/1-901 EPLCPLPSPP TSGSDSDSES PERDTRGSFR GHTPLDLTRS SKVKTLLLNA bmy_15420T0/1-881 EPLCPLPSPP TSGSDSDSEG PERDTRGSFR GHTPLDLTRS SKVKTLLLNA BACU012367/1-901 EPLCPLPSPP TSGSDSDSEG PERDTRGSFR GHTPLDLTRS SKVKTLLLNA 751 800 ENSP00000358983/1-900 AQNTMEPPLT PPSPAGPGLS LGDTALQNLE QLLDGPEAQG SWAELAERLG ENSTTRP00000007919/1-895 AQDTMAPPLT PPSPAEPEMP LEDTVLQNLE HLLDGPGAQG SWAELAERLG ENSBTAP00000007904/1-901 AQDTMAPPLT PPSPAGPEIP LEDTVLQNLE HLLDGPGAQG SWVELAERLG bmy_15420T0/1-881 AQDTMAPPLT PPSPAGPEMP LEDTVLQNLE HLLDGPGAQG SWAELAERLG BACU012367/1-901 AQDTMAPPLT PPSPAGPEMP LEDTVLQNLE HLLDGPGAQG SWAELAERLG 801 850 ENSP00000358983/1-900 LRSLVDTYRQ TTSPSGSLLR SYELAGGDLA GLLEALSDMG LEEGVRLLRG ENSTTRP00000007919/1-895 LRSLVDTYRK TASPSGSLLR SYKLAGGDLA GLLDALSDMG LDEGVRLLRG ENSBTAP00000007904/1-901 LRSLVDTYRR TASPSGSLLR SYQLAGGDWT GLLNALSDMG LEEGVRLLKG bmy_15420T0/1-881 LRSLVDTYRK TASPSGSLLR SYKLAGGDLA GLLDALSDMG LEEGVRLLRG BACU012367/1-901 LRSLVDTYRK TASPSGSLLR SYKLAGGDLA GLLDALSDMG LEEGVRLLRG 851 900 ENSP00000358983/1-900 PETRDKLPST AEVKEDSAYG SQSVEQEAEK LGPPPEPPGG LCHGHPQPQV ENSTTRP00000007919/1-895 PETREKLPST AEVKEDSAYG SQSVEQEAEK LGPPPEPPGG LCHGHLQPQV ENSBTAP00000007904/1-901 PETQEKLPST AEVKEDSAYG SQSVEQETEK LGPPPEPPGG LCHGRPQPQV bmy_15420T0/1-881 PETREKLPST AEVKEDSAYG SQSVEQEAEK LGPPPEPPGG LCHGHPQPQV BACU012367/1-901 PETREKLPST AEVKEDSAYG SQSVEQEAEK LGPPPEPPGG LCHGHPQPQV 901 950 ENSP00000358983/1-900 H ENSTTRP00000007919/1-895 H ENSBTAP00000007904/1-901 H bmy_15420T0/1-881 H BACU012367/1-901 H