KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:36 2014 Check: 00 .. Name: ENSP00000279907/1-1464 Len: 1498 Check: 8360 Weight: 1.00 Name: ENSBTAP00000007936/1-1494 Len: 1498 Check: 2509 Weight: 1.00 Name: ENSTTRP00000004521/1-1454 Len: 1498 Check: 4169 Weight: 1.00 Name: bmy_04777T0/1-1278 Len: 1498 Check: 7048 Weight: 1.00 Name: BACU000940/1-1463 Len: 1498 Check: 8211 Weight: 1.00 // 1 50 ENSP00000279907/1-1464 ---------- --MAGIIKKQ ILK------- --------HL SRFTKNLSPD ENSBTAP00000007936/1-1494 MNSLFEPEDD EAQSGARRQL ALRGGCLIKG GTTGVRKWYW VRFTKNLSPD ENSTTRP00000004521/1-1454 ---------- --MAGLIKKQ ILK------- --------HL SRFTKNLSPD bmy_04777T0/1-1278 ---------- --MAGLIKKQ ILK------- --------HL SRFTKNLSPD BACU000940/1-1463 ---------- --MAGLIKKQ ILK------- --------HL SRFTKNLSPD 51 100 ENSP00000279907/1-1464 KINLSTLKGE GELKNLELDE EVLQNMLDLP TWLAINKVFC NKASIRIPWT ENSBTAP00000007936/1-1494 KINLSTLKGE GELKNLELDE EVLQNMLDLP TWLAINKVFC NKASIRIPWT ENSTTRP00000004521/1-1454 KINLSTLKGE GELKNLELDE EVLQNMLDLP TWLAINKVFC NKASIRIPWT bmy_04777T0/1-1278 KINLSTLKGE GELKNLELDE EVLQNMLDLP TWLAINKVFC NKASIRIPWT BACU000940/1-1463 KINLSTLKGE GELKNLELDE EVLQNMLDLP TWLAINKVFC NKASIRIPWT 101 150 ENSP00000279907/1-1464 KLKTHPICLS LDKVIMEMST CEEPRSPNGP SPIATASGQS EYGFAEKVVE ENSBTAP00000007936/1-1494 KLKTHPICLS LDKVIMEMST CEEPRNPNGP SPIATASGQS EYGFAEKVVE ENSTTRP00000004521/1-1454 KLKTHPICLS LDKVIMEMST CEEPRTPNGP SPIATASGQS EYGFAEKVVE bmy_04777T0/1-1278 KLKTHPICLS LDKVIMEMST CEEPRNPNGP SPIATASGQS EYGFAEKVVE BACU000940/1-1463 KLKTHPICLS LDKVIMEMST CEEPRNPNGP SPIATASGQS EYGFAEKVVE 151 200 ENSP00000279907/1-1464 GISVSVNSIV IRIGAKAFNA SFELSQLRIY SVNAHWEHGD LRFTRIQDPQ ENSBTAP00000007936/1-1494 GITVSVNSIV IRIGAKAFNA SFELSQLRIY SVNANWEHGD LRFTRIQDPQ ENSTTRP00000004521/1-1454 GITVSVNSIV IRIGAKAFNA SFELSQLRIY SVNANWEHGD LRCARIQDPQ bmy_04777T0/1-1278 GITVSVNSIV IRIGAKAFNA SFELSQLRIY S--------- ---------- BACU000940/1-1463 GITVSVNSIV IRIGAKAFNA SFELSQLRIY SVNANWEHGD LRFARIQDPQ 201 250 ENSP00000279907/1-1464 RGEVLTFKEI NWQMIRIEAD ATQSSHLEIM CAPVRLITNQ SKIRVTLKRR ENSBTAP00000007936/1-1494 RGEVLTFKEI NWQMIRIEAD ATQSSHLEIM FAPVRLITNQ SKIRVTLKRR ENSTTRP00000004521/1-1454 RGEVLTFKEI NWQMIRIEAD ATQSSHLEIM CAPVRLITNQ SKIRVTLKRR bmy_04777T0/1-1278 ---VLTFKEI NWQMIRIEAD ATQSSHLEIM CAPVRLITNQ SKIRVTLKRR BACU000940/1-1463 RGEVLTFKEI NWQMIRIEAD ATQSSHLEIM CAPVRLITNQ SKIRVTLKRR 251 300 ENSP00000279907/1-1464 LKDCNVIATK LVLILDDLLW VLTDSQLKAM VQYAKSLSEA IEKSTEQRKS ENSBTAP00000007936/1-1494 LKDCNVIATK LVLILDDLLW VLTDSQLKAM VQYAKSLSEA IEKSTEQRKS ENSTTRP00000004521/1-1454 LKDCNVIATK LVLMLDDLLW VLTDSQLKAM VQYAKSLSEA IEKSTDQRKS bmy_04777T0/1-1278 LKDCNVIATK LVLMLDDLLW VLTDSQLKAM VQYAKSLSEA IEKSTEQRKS BACU000940/1-1463 LKDCNVIATK LVLMLDDLLW VLTDSQLKAM VQYAKSLSEA IEKSTEQRKS 301 350 ENSP00000279907/1-1464 MAPEPTQSST VVASAQQVKT TQTSNAPDVN DAIVKLFNDF DVKETSHHLV ENSBTAP00000007936/1-1494 MAPEPTQSSA VAPSTQHAKT PQTSNAPDLS DAIVKLFSDF DVKETSHHLV ENSTTRP00000004521/1-1454 MAPEPTQSST VAPSTQQVKT PQTSNAPDLN DASVKLFNDF DVKETSHHLV bmy_04777T0/1-1278 MAPEPTQSST VAPSTQQVKT PQTSNAPDLN DAIVKLFNDF DVKETSHHLV BACU000940/1-1463 MAPEPTQSSA VAPSTQQVKT PQTSNAPDLN DAIVKLFNDF DVKETSHHLV 351 400 ENSP00000279907/1-1464 ISHLDLHICD DIHAKEKESN RRITGGAMQL SFTQLTIDYY PYHKAGDSCN ENSBTAP00000007936/1-1494 VSHLDLHICD DIHAKEKESN RRITGGAMQL SFTQLTIDYY PYHKAGDSCN ENSTTRP00000004521/1-1454 ISHLDLHICD DIHAKEKESN RRITGGAMQL S-TQLMXVY- ------DSCN bmy_04777T0/1-1278 ISHLDLHICD DIHAKEK--- ---------- ---------- -----GDSCN BACU000940/1-1463 ISHLDLHICD DIHAKEKESN RRITGGAMQL SFTQLTIDYY PYHKAGDSCN 401 450 ENSP00000279907/1-1464 HWMYFSDATK TKNGWANELL HEFECNVEML KQAVKDHNVG SPPKSPTHAS ENSBTAP00000007936/1-1494 HWMYFSDATK TKNGWANELL HEFECNVEML KQAVKDHNVG SPPKSPTHAS ENSTTRP00000004521/1-1454 HWMYFSDATK IKNGWANELL HEFECNVEML KQAVKDHDVG SPPKSPTHAS bmy_04777T0/1-1278 HWMYFSDATK IKNGWANELL HEFECNVEML KQAVKDXDVG SPPESPTHAS BACU000940/1-1463 HWMYFSDATK IKNGWANELL HEFECNVEML KQAVKDHDVG SPPESPTHAS 451 500 ENSP00000279907/1-1464 PQHTQTEKDY PLKGTCRTPS VLSQQSKAKL MSSSVVVRLA DFNIYQVSTA ENSBTAP00000007936/1-1494 PQHTQTEKDS ALKGASKKPS ALSQQSKVKL MSSSVVVRLA DFNIYQVSTA ENSTTRP00000004521/1-1454 PQHTQTEKDS TLKGTSKTPT VLPQQSKVKL MSSSVVVRLA DFNIYQVSTA bmy_04777T0/1-1278 PQHTQTEKDS TLKGTSKTPT VLPQQSKVKL MSSSVVVRLA DFNIYQVSTA BACU000940/1-1463 PQHTQTEKDS TLKGTSKTPT VLPQQSKVKL MSSSVVVRLA DFNIYQVSTA 501 550 ENSP00000279907/1-1464 EQCRSSPKSM ICCNKKSLYL PQEMSAVYIE FTEYYYPDGK DFPIPSPNLY ENSBTAP00000007936/1-1494 EQCRSSPKSM ISCNKKSLYL PQEMSAVYIE FTEYYYPDGK DFPIPSPNLY ENSTTRP00000004521/1-1454 EQCRSSPKSM ISCNKKSLYL PQEMSAVYIE FTEYYYPDGK DFPIPSPNLY bmy_04777T0/1-1278 EQCRSSPKSM ISCNKKSLYL PQEMSAVYIE FTEYYYPDGK DFPIPSPNLY BACU000940/1-1463 EQCRSSPKSM ISCNKKSLYL PQEMSAVYIE FTEYYYPDGK DFPIPSPNLY 551 600 ENSP00000279907/1-1464 SQLNALQFTV DERSILWLNQ FLLDLKQSLN QFMAVYKLND NSKSDEHVDV ENSBTAP00000007936/1-1494 SQLNALQFTV DERSILWLNQ FVLDLKQSLN QFMAVYKLND NSKSDEHVDI ENSTTRP00000004521/1-1454 SQLNALQFTV DERSILWLNQ FLLDLKQSLN QFMAVYKLND NSKSDEHVDI bmy_04777T0/1-1278 SQLNALQFTV DERSILWLNQ FLLDLKQSLN QFMAVYKLND NSKSDEHVDI BACU000940/1-1463 SQLNALQFTV DERSILWLNQ FLLDLKQSLN QFMAVYKLND NSKSDEHVDI 601 650 ENSP00000279907/1-1464 RVDGLMLKFV IPSEVK-SEC HQDQPRAISI QSSEMIATNT RHCPNCRHSD ENSBTAP00000007936/1-1494 RVDGLMLKFV IPSEMK-SEC HQDQPRAISI QSSEMIATNT RHCPNCRHSD ENSTTRP00000004521/1-1454 RVDGLMLKFV IPSEMK-SEC HQDQPHAISI QSSEMIATNT RYCSNCRHSD bmy_04777T0/1-1278 RVDGLMLKFV IPSEMKSSEC HQDQPHAISI QSSEMIATNT RYCSNCRHSD BACU000940/1-1463 RVDGLMLKFV IPSEMKSSEC HQDQPHAISI QSSEMIATNT RYCSNCRHSD 651 700 ENSP00000279907/1-1464 LEALFQDFKD CDFFSKTYTS FPKSCDNFNL LHPIFQRHAH EQDTKMHEIY ENSBTAP00000007936/1-1494 LEALFQDFKD CDFFSKTYTS FPKSGDNFNL LHPIFQRHAH EQDTKLHEVY ENSTTRP00000004521/1-1454 LEALFQDFKD CDFFSKTYTS FPKSGDSFNL LHPIFQRHAH EQDTKLHEVY bmy_04777T0/1-1278 LEALFQDFKD CDFFSKTYTS FPKSGDNFNL LHPIFQRHAH EQDTKLHEVY BACU000940/1-1463 LEALFQDFKD CDFFSKTYTS FPKSGDNFNL LHPIFQRHAH EQDTKLHEVY 701 750 ENSP00000279907/1-1464 KGNITPQLNK NTLKTSAATD VWAVYFSQFW IDYEGMKSGK GRPISFVDSF ENSBTAP00000007936/1-1494 KGNVTPKLNK HTLKTSAATD VWAVYFSQFW IDYEGMKSGK GRPINFVDSF ENSTTRP00000004521/1-1454 KGNVTPKLNK YTLKTSAATD VWAVYFSQFW IDYEGMKSGK GRPINFVDSF bmy_04777T0/1-1278 KGNVTPKLNK YTLKTFAATD VWAVYFSQFW IDYEGMKSGK GRPINFVDSF BACU000940/1-1463 KGNVTPKLNK YTLKTSAATD VWAVYFSQFW IDYEGMKSGK GRPINFVDSF 751 800 ENSP00000279907/1-1464 PLSIWICQPT RYAESQKEPQ TCNQVSLNTS QSESSDLAGR LKRKKLLKEY ENSBTAP00000007936/1-1494 PLSIWICQPK RYAVSQKSLQ TCNQISLNTS QSESSDLTGR WKRKKLLKEY ENSTTRP00000004521/1-1454 PLSIWICQPK RYALSQKLLQ TCNQISLNTS QSESSDLTGR WKRKKLLKEY bmy_04777T0/1-1278 PLSIWICQPK RYALSQKLLQ TCNQISLNTS QSESSDVTGR WKRKKLLKEY BACU000940/1-1463 PLSIWICQPK RYALSQKLLQ TCNQISLNTS QSESSDLTGR WKRKKLLKEY 801 850 ENSP00000279907/1-1464 YSTESEPLTN GGQKPSSSDT FFRFSPSSSE ADIHLLVHVH KHVSMQINHY ENSBTAP00000007936/1-1494 YSTECDPLTS GGQKP-SSDT FLRFSSPSSD ADIHVLVHVR KHVSMQINHY ENSTTRP00000004521/1-1454 YSTESDPLTN GSQKP--SDT FLRFSSSSSD ADIHVLVHIH KHVSMQINHY bmy_04777T0/1-1278 YSTESDPLTN GSQKP--SDT FLRFSSSSSD ADIHVLVHIH KHVSMQINHY BACU000940/1-1463 YSTESDPLTN GSQKP--SDT FLRFSSSSSD ADIHVLVHIH KHVSMQINHY 851 900 ENSP00000279907/1-1464 QYLLLLFLHE SLILLSENLR KDVEAVTGSP ASQTSICIGI LLRSAELALL ENSBTAP00000007936/1-1494 QYLLLLFLHE SLILLSENLR KDVEAVTGSP ASQTSVCIGI LLKSAEVALL ENSTTRP00000004521/1-1454 QYLLLLFLHE SLILLSENLR KDVEAVTGNP ASQTSICIGI LLKSAEVALL bmy_04777T0/1-1278 QYLLLLFLHE SLILLSENLR KDVEAVTGNP ASQTSICIGI LLKSAEVALL BACU000940/1-1463 QYLLLLFLHE SLILLSENLR KDVEAVTGNP ASQTSICIGI LLKSAEVALL 901 950 ENSP00000279907/1-1464 LHPVDQANTL KSPVSESVSP VVPDYLPTEN GDFLSSKRKQ ISRDINRIRS ENSBTAP00000007936/1-1494 LHPVDQANTL KSPVSESVSP MVPDYLPAEN GEFLPSKRKH VSSGINQIRS ENSTTRP00000004521/1-1454 LHPVDKANSL KSPVSESVSP VVPDYLPTES GEFLSSKRKQ VNSGIKQIRS bmy_04777T0/1-1278 LHPVDKANSL KSPVSESVSP VVPDYLPTEN REFLSSKRKQ VNSGIKQIRS BACU000940/1-1463 LHPVDKANSL KSPVSESVSP VVPDYLPTEN GEFLSSKRKQ VNSGIKQIRS 951 1000 ENSP00000279907/1-1464 VTVNHMSDNR SMSVDLSHIP LKDPLLFKSA SDTNLQKGIS FMDYLSDKHL ENSBTAP00000007936/1-1494 VTLNHMSDNR SMSVDLSHVP VKDSLLFKSA SDTNLQKDIS SLNYLSDKNL ENSTTRP00000004521/1-1454 VTVNHMSDNR SMSIDLSHVP LKDSLLFKSA SDTNLQKGIS FVDYLSDKNL bmy_04777T0/1-1278 VTVNHMSENR SMSIDLSHVP LKDSLLFKSA SDTNLQKGIS FLDYLSDKNL BACU000940/1-1463 VTVNHMSDNR SMSIDLSHVP LKDSLLFKSA SDTNLQKGIS FLDYLSDKNL 1001 1050 ENSP00000279907/1-1464 GKISEDESSG LVYKSGSGEI GSETSDKKDS FYTDSSSILN YREDSNILSF ENSBTAP00000007936/1-1494 GKISEVESSG LVSQSGSGEI GSETSGKKVS SYTDSNSVLN YREDSSILSF ENSTTRP00000004521/1-1454 GKISEDESSG IVCKSGSGEI GSETSGKKDS SYTDSNSVLN YREDSSILSV bmy_04777T0/1-1278 GKISEDESSG IVCKSGSGEI GSETSGKKDS SYTDSNSVLN YREDSSMLSF BACU000940/1-1463 GKISEDGSSG IVCKSGSGEI GSETSGKKDS SYTDSNSVLN YREDSSMLSF 1051 1100 ENSP00000279907/1-1464 DSDGNQNILS STLTSKGNET IESIFKAEDL LPEAASLSEN LDISKEETPP ENSBTAP00000007936/1-1494 DDGGNQNILS NSLTSKRSET IESIFKAEDL LPETASLSEN VEISKEEAPT ENSTTRP00000004521/1-1454 DNGGNQNMLS NSLTSKGNET IESIFKAEDL LPETVSLSEN MEISKEEAPT bmy_04777T0/1-1278 DNGGNQNILS NSLTSKGNET IESIFKAEDL LPETVSLSEN MEISKEEAPT BACU000940/1-1463 DNGGNQNILS NSLTSKGNET IESIFKAEDL LPETVSLSEN MEISKEEAPT 1101 1150 ENSP00000279907/1-1464 VRTLKSQSSL SGKPKERCPP NLAPLCVSYK NMKRSSSQMS LDTISLDSMI ENSBTAP00000007936/1-1494 IRTLKSQSSL SGKPKERCLP TLAPVS-TYK NMRRSPSQTS LDTISLDSMI ENSTTRP00000004521/1-1454 VRTLTSQSSL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04777T0/1-1278 VRTLKSQSSL SRKPKERCPP NMAPLSVSYK NMRRSPSQTS LDTISLDSMI BACU000940/1-1463 VRTLKSQSSL SRKPKERCPP NMAPLSVSYK NMRRSPSQTS LDTISLDSMI 1151 1200 ENSP00000279907/1-1464 LEEQLLESDG SDSHMFLEKG NKKNSTTNYR GTAESVNAGA NLQNYGETSP ENSBTAP00000007936/1-1494 LEEQLLESDG SDSHIFLEKG IKKNSTTNYQ SPADQTNASA NLQNYGETSP ENSTTRP00000004521/1-1454 XXXXXXXXXX XXXXXXXXXX IKKNSTTNYQ SPADRANASE NLQNYGETSP bmy_04777T0/1-1278 LEEQLLESDG SDSHIFLEKG IKKNSTTNYQ SPADRANASA NLQNYGETSP BACU000940/1-1463 LEEQLLESDG SDSHIFLEKG IKKNSTTNYQ SPADRANASA NLQNYGETSP 1201 1250 ENSP00000279907/1-1464 DAISTNSEGA QENHDDLMSV VVFKITGVNG EIDIRGEDTE ICLQVNQVTP ENSBTAP00000007936/1-1494 DAISTNSEGA QESHDDLMSI VVFKITGVNG EIDIRGEDTE ICLQVDQVIP ENSTTRP00000004521/1-1454 DAISTNSEGA QENHDDLMSV VVFKIIGVNG EIDIRGEDME ICLQVDQVTP bmy_04777T0/1-1278 DAISTNSEGA QENHDDL--- ---------- ---------- ---------- BACU000940/1-1463 DAISTNSEGA QENHDDLMSV VVFKIIGVNG EIDIRGEDME ICLQVDQVTP 1251 1300 ENSP00000279907/1-1464 DQLGNISLRH YLCNRPVGSD QKAVIHSKSS PEISLRFESG PGAVIHSLLA ENSBTAP00000007936/1-1494 DQLGNISLRH YLSHRPVGSD HKAVIHSKSS PEITLRFESG PGAVIHSLLA ENSTTRP00000004521/1-1454 DQLGNISLRH YLCNRPVGSD HKAVIHSKSS PEITLRFESG PGAVIHSLLA bmy_04777T0/1-1278 ---------- ---------- ---------- ---------- ---------- BACU000940/1-1463 DQLGNISLRH YLCNRPVVSD HKAVIHSKSS PEITLRFESG PGAVIHSLLA 1301 1350 ENSP00000279907/1-1464 EKNGFLQCHI ENFSTEFLTS SLMNIQHFLE DETVATVMPM KIQVSNTKIN ENSBTAP00000007936/1-1494 EKNGFLQCHI ENFSTEFLVS SLMNIQHFLE DETVATVMPM KIQVSNTKIN ENSTTRP00000004521/1-1454 EKNGFLQCHI ENFSTEFLIS SLMNIQHFLE DETVATVMPM KIQVSNTKIN bmy_04777T0/1-1278 ---------- ---------- ---------- ---------- ---------- BACU000940/1-1463 EKNGFLQCHI ENFSTEFLIS SLMNIQHFLE DETVATVMPM KIQVSNTKIN 1351 1400 ENSP00000279907/1-1464 LKDDSPRSST VSLEPAPVTV HIDHLVVERS DDGSFHIRDS HMLNTGNDLK ENSBTAP00000007936/1-1494 LKDDSPRSST ISLEPAPVTV HIDHLVVERN DDGSFHIRDS QILNTRNDLE ENSTTRP00000004521/1-1454 LKDDSPRSNT VSFEPAPVTV HIDHLVVERN DDGSFHIRDS QMLNTRNDLK bmy_04777T0/1-1278 --DDSPRSST VSLEPAPVTV HIDHLVVERN DDGSFHIRDS QMLNTRNDLK BACU000940/1-1463 LKDDSPRSST VSLEPAPVTV HIDHLVVERN DDGSFRIRDS QMLNSRNDLK 1401 1450 ENSP00000279907/1-1464 ENVKSDSVLL TSGKYDLKKQ RSVTQATQTS PGVPWPSQSA NFPEFSFDFT ENSBTAP00000007936/1-1494 ENVKSDSVLH TSGTCDLKKK HSVTQATQTS PEVPWPLQSA NFPECSFDFT ENSTTRP00000004521/1-1454 EDVESDSVLL TSGKCDLKKQ HSVTQATQTS PEVPWPSQSV NFPECSFDFT bmy_04777T0/1-1278 EDVKSDSVLL TSGKCDLKKQ HSVTQATQTS PEVPWPSRSV NFPECSFDFT BACU000940/1-1463 EDVKSDSVLL TSGKCDLKKQ HGVTQATQTS PEVPWPSRSV NFPECSFDFT 1451 1500 ENSP00000279907/1-1464 REQLMEENES LKQELAKAKM ALAEAHLEKD ALLHHI---- --KKMTVE ENSBTAP00000007936/1-1494 REQLMEENES LKQELAKAKM ALAEAHLEKD ALLHQLNIRS GSQKLKL- ENSTTRP00000004521/1-1454 REQLMEENES LKQELAKAKT ALAEAHLEKD ALLHHI---- --KKMTVE bmy_04777T0/1-1278 REQLMEENES LKQELAKAKT ALAEAHLEKD ALLHHI---- --KKMTVE BACU000940/1-1463 REQLMEENES LKQELAKAKT ALAEAHLEKD ALLHHI---- --KKMTVE