KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:39 2014 Check: 00 .. Name: bmy_18953T0/1-325 Len: 548 Check: 4562 Weight: 1.00 Name: ENSTTRP00000005930/1-496 Len: 548 Check: 1362 Weight: 1.00 Name: BACU008409/1-506 Len: 548 Check: 9768 Weight: 1.00 Name: ENSP00000468424/1-496 Len: 548 Check: 1926 Weight: 1.00 Name: ENSBTAP00000007950/1-496 Len: 548 Check: 1899 Weight: 1.00 // 1 50 bmy_18953T0/1-325 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005930/1-496 MADESDTAVK PPVPPLPQMM EGNGNGHEHC SDCENEEDNS YNRGXXXXXX BACU008409/1-506 MADESDTAVK PPVPPLPQMM EGNGNGHEHC SDCENEEDNS YNRGGLSPAN ENSP00000468424/1-496 MADESETAVK PPAPPLPQMM EGNGNGHEHC SDCENEEDNS YNRGGLSPAN ENSBTAP00000007950/1-496 MADESDTAVK PPAPPLPQMM EGNGNGHEHC SDCENEEDNS YNRGGLSPAN 51 100 bmy_18953T0/1-325 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005930/1-496 XXXXXXXXXX XXXXXXXXXE TDSAQDQPVK MNSLPAERIQ EIQKAIELFS BACU008409/1-506 DTGAKKKKKK QKKKKEKGSE TDSAQDQPVK MNSLPAERIQ EIQKAIELFS ENSP00000468424/1-496 DTGAKKKKKK QKKKKEKGSE TDSAQDQPVK MNSLPAERIQ EIQKAIELFS ENSBTAP00000007950/1-496 DTGAKKKKKK QKKKKEKGSE TDSAQDQPVK MNSLPAERIQ EIQKAIELFS 101 150 bmy_18953T0/1-325 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005930/1-496 VGQGPAKTME EASKRSYQFW DTQPVPKLGE VVNTHGPVEP DKDSIRQEPY BACU008409/1-506 VGQGPAKTME EASKRSYQFW DTQPVPKLGE VVNTHGPVEP DKDNIRQEPY ENSP00000468424/1-496 VGQGPAKTME EASKRSYQFW DTQPVPKLGE VVNTHGPVEP DKDNIRQEPY ENSBTAP00000007950/1-496 VGQGPAKTME EASKRSYQFW DTQPVPKLGE VVNTHGPVEP DKDNIRQEPY 151 200 bmy_18953T0/1-325 ---------- ---------- ---------- ------MFRF DYSPEFLLWA ENSTTRP00000005930/1-496 TLPQDFAWDA LDLGDRGVLK ELYTLLNENY VEDDDNMFRF DYSPEFLLWA BACU008409/1-506 TLPQDFTWDA LDLGDRGVLK ELYTLLNENY VEDDDNMFRF DYSPEFLLWA ENSP00000468424/1-496 TLPQGFTWDA LDLGDRGVLK ELYTLLNENY VEDDDNMFRF DYSPEFLLWA ENSBTAP00000007950/1-496 TLPQGFTWDA LDLGDRGVLK ELYTLLNENY VEDDDNMFRF DYSPEFLLWA 201 250 bmy_18953T0/1-325 LWPPGWLPQW HCGVLVVSTQ KLVGLIIAIP ANIHIYDTEK KMVEINFLCV ENSTTRP00000005930/1-496 LRPPGWLPQW HCGVRVVSSR KLVGFISAIP ANIHIYDTEK KMVEINFLCV BACU008409/1-506 LRPPGWLPQW HCGVRVVSSR KLVGFISAIP ANIHIYDTEK KMVEINFLCV ENSP00000468424/1-496 LRPPGWLPQW HCGVRVVSSR KLVGFISAIP ANIHIYDTEK KMVEINFLCV ENSBTAP00000007950/1-496 LRPPGWLPQW HCGVRVVSSR KLVGFISAIP ANIHIYDTEK KMVEINFLCV 251 300 bmy_18953T0/1-325 HKKLHSKRVA PVLICEITQR VHLEGIFQAV YTAGMVLPKP VGTC------ ENSTTRP00000005930/1-496 HKKLRSKRVA PVLIREITRR VHLEGIFQAV YTAGVVLPKP VGTCRYWHRS BACU008409/1-506 HKKLRSKRVA PVLIREITRR VHLEGIFQAV YTAGVVLPKP VGTCRYWHRS ENSP00000468424/1-496 HKKLRSKRVA PVLIREITRR VHLEGIFQAV YTAGVVLPKP VGTCRYWHRS ENSBTAP00000007950/1-496 HKKLRSKRVA PVLIREITRR VHLEGIFQAV YTAGVVLPKP VGTCRYWHRS 301 350 bmy_18953T0/1-325 ---------- -----RNMTM QCTMKFYQLP E--------- ---IPKTAGP ENSTTRP00000005930/1-496 LNPRKLIEVK FSHLSRNMTM QRTMKLYRLP E--------- ---TPKTAGL BACU008409/1-506 LNPRKLIEVK FSHLSRNMTM QRTMKLYRLP EATRLMLSGS FFQTPKTAGL ENSP00000468424/1-496 LNPRKLIEVK FSHLSRNMTM QRTMKLYRLP E--------- ---TPKTAGL ENSBTAP00000007950/1-496 LNPRKLIEVK FSHLSRNMTM QRTMKLYRLP E--------- ---TPKTAGL 351 400 bmy_18953T0/1-325 QPMGXKDIPI VHQLLTWYLK QFHLMPVRSQ EEVNI----G EYITDTSVVE ENSTTRP00000005930/1-496 RPMEKKDIAV VHKLLTQYLK QFHLTPVMSQ EEVEHWFYPQ ENIIDTFVVE BACU008409/1-506 RPMEKKDIAV VHQLLTQYLK QFHLTPVMSQ EEVEHWFYPQ ENIIDTFVVE ENSP00000468424/1-496 RPMETKDIPV VHQLLTRYLK QFHLTPVMSQ EEVEHWFYPQ ENIIDTFVVE ENSBTAP00000007950/1-496 RPMEKKDIPV VHQLLSRYLK QFHLTPVMSQ EEVEHWFYPQ ENIIDTFVVE 401 450 bmy_18953T0/1-325 NANGEVTDVL SFYTXLSPII NHPTHKSLKA AYSFYNIHTQ TPLLDLMSNA ENSTTRP00000005930/1-496 NANGEVTDFL SFYTLPSTIM NHPTHKSLKA AYSFYNVHTQ TPLLDLMSDA BACU008409/1-506 NANGEVTDFL SFYTLPSTIM NHPTHKSLKA AYSFYNVHTQ TPLLDLMSDA ENSP00000468424/1-496 NANGEVTDFL SFYTLPSTIM NHPTHKSLKA AYSFYNVHTQ TPLLDLMSDA ENSBTAP00000007950/1-496 NANGEVTDFL SFYTLPSTIM NHPTHKSLKA AYSFYNVHTQ TPLLDLMSDA 451 500 bmy_18953T0/1-325 LVLTKMKGFD MFNAVDLMEN KTFLKKLKFS IGDSNLQYYL NNWKCPAWGQ ENSTTRP00000005930/1-496 LVLAKMKGFD VFNALDLMEN KTFLEKLKFG IGDGNLQYYL YNWKCPSMGA BACU008409/1-506 LVLAKMKGFD VFNALDLMEN KTFLEKLKFG IGDGNLQYYL YNWKCPSMGA ENSP00000468424/1-496 LVLAKMKGFD VFNALDLMEN KTFLEKLKFG IGDGNLQYYL YNWKCPSMGA ENSBTAP00000007950/1-496 LVLAKMKGFD VFNALDLMEN KTFLEKLKFG IGDGNLQYYL YNWKCPSMGA 501 550 bmy_18953T0/1-325 RRLGWCYSNQ LPVRFWIKPL RIQTRKWSPT TCWSNFHKRE NLWHGEQN ENSTTRP00000005930/1-496 EKVGLVLQ-- ---------- ---------- ---------- -------- BACU008409/1-506 EKVRTC---- ---------- ---------- ---------- -------- ENSP00000468424/1-496 EKVGLVLQ-- ---------- ---------- ---------- -------- ENSBTAP00000007950/1-496 EKVGLVLQ-- ---------- ---------- ---------- --------