KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:40 2014 Check: 00 .. Name: ENSP00000254336/1-637 Len: 696 Check: 2191 Weight: 1.00 Name: ENSBTAP00000007968/1-572 Len: 696 Check: 2383 Weight: 1.00 Name: ENSTTRP00000007923/1-622 Len: 696 Check: 2716 Weight: 1.00 Name: bmy_04842T0/1-672 Len: 696 Check: 6295 Weight: 1.00 Name: BACU009396/1-656 Len: 696 Check: 9470 Weight: 1.00 // 1 50 ENSP00000254336/1-637 MTKRKKLRTS G-EGLCPPKP LKNPRLGDFY G-DPQSSMLG CLHHPEEPEG ENSBTAP00000007968/1-572 MSKRKKLRTS GREGLHLPKL PKNPRIEDSD GATSQSSLLD SWHHPEESEG ENSTTRP00000007923/1-622 MSKRKKLRTS GGEGIRPPKL PKNPRLGDSD G-DPQSSKLG HWHHPEETES bmy_04842T0/1-672 MSKRKKLRTS GGEGIRPPKL PKNPRLGDSG G-DPQSSKLG HWHHPEETES BACU009396/1-656 MSKRKKLRTS GGKGIHPPKL PKNPRLGDSD G-DPQSSKLG HWHHPEETES 51 100 ENSP00000254336/1-637 KLGPVPSTQQ HGEEPGKAVS SSPDEETGSP CRLLRQPEKE PAPLPPSQNS ENSBTAP00000007968/1-572 GSGLTPSAEQ SREEPGQAAS SSPDNEADAP SGLLGQPERE PVPLPPSQNS ENSTTRP00000007923/1-622 RSGPAPSAEQ SPEAPGQAAS SSPYEEVGAP SRLLGQPEKE PVRLPPSQNS bmy_04842T0/1-672 RSGPAPSAEQ SREEPGQAAS SSPYEEAGAP SRLLREPEKE PVHLPPSQNS BACU009396/1-656 RSGPAPSAEQ NREEPGQAAS SSPYEEAGAP SRLLGEPEKE PIRLPPSQNS 101 150 ENSP00000254336/1-637 FGRFVPQFAK SRKTVTRKEE MKDEDRGSGA FSLETIAESS AQSPGCQLLV ENSBTAP00000007968/1-572 VGKFVPQFAK PRKTVTRQAE RREEGLRMGV FSSGTLPEPS AQQTSSQPQK ENSTTRP00000007923/1-622 AGRFVPQFTK PRKTVTGRAE KREEDPRSGA FSLETLPEPS AQRPE-QPRE bmy_04842T0/1-672 VRRFVPQFAK PRKTVTGRAE RREEDPRSGA FSLETLPEPS AQQARSQPQE BACU009396/1-656 VGRFVPQFAK PRKTVTGRAE RREEDPRTGA FSLETLPEPS AQQARSQPQE 151 200 ENSP00000254336/1-637 ETLGVPLQEA TELGDPTQAD SARPEQSSQS PVQAVPGSGD SQP----DDP ENSBTAP00000007968/1-572 ESPGLALLEA RDPGHQTQAD GTCTEPSGLS PMTPGPSDAD PQPSFSTNAS ENSTTRP00000007923/1-622 ESPGLALQET RDPGDQTQAD SACPEPSGQN PVTPVPGDGD PQPLASSTAS bmy_04842T0/1-672 ESPGLALQET RDPGDQTQAD SACPEPSGQN PVMPVPGDGD PQPLASSIAS BACU009396/1-656 ESPGLALQET RDPGDQTQAD SACPEPSGQN PVTPVPGDGD PQPLASSIAS 201 250 ENSP00000254336/1-637 PDRGTGLSAS QRASQDHLSE QGA---DDSK PETDRVPGDG GQKEHLPSID ENSBTAP00000007968/1-572 PESGTVPSAS ERAGQDYLSE PGTNVPKSGS TEEGWAPGNQ GQKGPLPGSD ENSTTRP00000007923/1-622 LEWGTVPSAS ERASQDHLSK HGTNVPDGGS TEEGWLPGDH GQKGHLPGSD bmy_04842T0/1-672 LEWGTVPSAS EGASQDHLSK HGTNVPDGGS TEEGWVPGDH GQKGHLPGSD BACU009396/1-656 LEWGTVLSAS ERASQDHLSK HGTNVPDGGS MEEGWVPGDH GQKGHLPGTD 251 300 ENSP00000254336/1-637 SEGEKPDRGA PQEGGAQRTA GAGLPGGPQE EGDGVPCTPA SAPTSGPAPG ENSBTAP00000007968/1-572 SGEMGPERGA PQQGGAQGLA GADQLEGLRE EGGSL----- ---------- ENSTTRP00000007923/1-622 AEEE-PDQGA PQEGGARGEA GAELPEECQE EEDGI----- ---------- bmy_04842T0/1-672 AEEE-PDQGA PQEGGARGEA GVELPEERQE EEDGI----- ---------- BACU009396/1-656 PEEE-PDQGA PQEGGARGEA GAELPEERQE EEDSI----- ---------- 301 350 ENSP00000254336/1-637 LGPASWCLEP GSVAQGSPDP QQTPSRMGRE GEGTHSSLGC SSLGMVVIAD ENSBTAP00000007968/1-572 LGP-----EP PSAALGPPLP LQTL---GRE AEWSWSGPRC PPLGAIVIAD ENSTTRP00000007923/1-622 LGP-----EP RSAAQGPSGP LQTPSWTGGG AEGSYSSPRC SRLGAVVIAG bmy_04842T0/1-672 LGP-----EP RSAAQGPPDA LQTPSWTGGG AEWSYSSPRC SRLGAVVIAG BACU009396/1-656 LGP-----EP RSAAQGPPDA LQTPSWTGGG AEWSYSSPRC SRLGAVVIAG 351 400 ENSP00000254336/1-637 LSTDPTELEE RALEVAGPDG QASAISPASP RRKAADGGHR RALPGCTSLT ENSBTAP00000007968/1-572 VNTDPAEPEH RALRVAGPDR EVSTRVPASP SGKAPDAGCS GALLSCTPLT ENSTTRP00000007923/1-622 VSTDATEPEQ RALGVAGPGG TVNARVTASP SGKAPDGGHS RALLGCMPLN bmy_04842T0/1-672 VSTDPTEPEQ RALGVAGPDG MVNARVTASP SRKAPDGGHS RALLGCMPLT BACU009396/1-656 VSTDPTEPQQ RALGVAGPDG TVNARVTASR SGKASDGGRS RALLGCMPLT 401 450 ENSP00000254336/1-637 GETTGESGEA GQDGKPPGDV LVGPTASLAL APGSGESMMG AGDSGHASPD ENSBTAP00000007968/1-572 GVTSGSRGEA QWEDEPPGDI LGCFAASLPL PHETQEPTLG AGDPSPSALE ENSTTRP00000007923/1-622 GETTGGREEA RRADKPPDDV PGGLAASLAP AHESQEPTIG AGDSSPLALQ bmy_04842T0/1-672 GETTGGREEA RQEDKPPDDV PGGLAASPDL AHEIQEPTIG VGDSSPLALE BACU009396/1-656 GETAGGREEA RREDKPPDDV PGGLAASLAL AHEIQEPTIG VGDSSPLALE 451 500 ENSP00000254336/1-637 TGPCVNQKQE PGPAQEE--- ---------- -----AELGG QNLERDLEGF ENSBTAP00000007968/1-572 TGPDVGQTQV PGPAEKA--- ---------- -----AELGS PSRKQDLQGL ENSTTRP00000007923/1-622 MGPGVGQTQV PGPDQEG--- ---------- -----AELGS QSHEQDLKGR bmy_04842T0/1-672 MGPTVGQTQV PGPDQEGLGG MCLLPLLSQP VGKKAAELGS HSHKQDLKGL BACU009396/1-656 MGPGVGQTQV PGPDQEGLG- ---------- -----AELGS HSHKQDLKGL 501 550 ENSP00000254336/1-637 RVSPQASVVL EHREIADDPL QEPGAQQGIP DTTSELAGQR DHLPHSADQG ENSBTAP00000007968/1-572 GLSLRASAIL MYQEAVGGPP QDAGAGQSSP DTPTGPVGQP WRPADSSKQA ENSTTRP00000007923/1-622 SLSLGACAPP AYREAVDGPP QDAGARQGSP EAHTSPAGQP EHPADSSEQA bmy_04842T0/1-672 SLPLGACAPP VYREAVDGPP QDAGARQGSP DARTSPAGQP EHPADSSEQA BACU009396/1-656 SLPLGACAPP VYREAVDGPP QDAGARQGSP DARTSPAGQP EHPADSSEQA 551 600 ENSP00000254336/1-637 TWADSLAVEL DFLLDSQIQD ALDASDFEAP PEQLFPSGNK PGPCWPGPSS ENSBTAP00000007968/1-572 IWEGSPALEL DFLPDSEIQD ALEAPGFEAP PEQLFPAGGE LDPCQPGTGP ENSTTRP00000007923/1-622 VWEGSSAMEL YFLPDSQTQD ALEAPGFEAP PEQLSPAGSG LDPCWPGTSP bmy_04842T0/1-672 VWEGSPAMEL YFLPDSQTQD ALEAPGFEAP PEQLSPAGSG LDPCWPGTSP BACU009396/1-656 VWEGSPAMEL YFLPDSQTQD ALEAPGFEAP PEQLSPAGSG LDPCWPGTSP 601 650 ENSP00000254336/1-637 HANGDPVAVA KAQP------ ---------- ---------- -----SRLIM ENSBTAP00000007968/1-572 CADRGP--RA EAQPR----- ---------- ---------- ---------- ENSTTRP00000007923/1-622 RADGGS--LA EAQP------ ---------- ---------- -----SRLIM bmy_04842T0/1-672 RADGGS--LA EAQPRTQMGI KTCEAARMED ATDTVRGLVI ELSNLNRLIM BACU009396/1-656 RADGGS--LA EAQPRTRVGI KTCEAARMED ATDTVRGLVI ELSNLNRLIM 651 700 ENSP00000254336/1-637 GTHRDLEAFK RLN-YRKTKL GGKAPLPYPS KGPGNIPRGD PPWREL ENSBTAP00000007968/1-572 ---------- ---------- ---------- ---------- ------ ENSTTRP00000007923/1-622 SAHRDLEAFK RLNYYQKAKP AGKAPAAYTP KGAGNLPRGE QSWRDS bmy_04842T0/1-672 SAHRDLEAFK RLNYYQKAKP AGKAPAPYTP KGAGNLPRGE QSWRDS BACU009396/1-656 SAHRDLEAFK RLNYYQKAKP AGKAPAPYTP KGAGNLPRGE QSWRDS