KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:41 2014 Check: 00 .. Name: ENSTTRP00000007929/1-943 Len: 1135 Check: 1235 Weight: 1.00 Name: ENSP00000313601/1-951 Len: 1135 Check: 4498 Weight: 1.00 Name: ENSBTAP00000007973/1-951 Len: 1135 Check: 5074 Weight: 1.00 Name: bmy_04841T0/1-941 Len: 1135 Check: 3929 Weight: 1.00 Name: BACU009395/1-999 Len: 1135 Check: 790 Weight: 1.00 // 1 50 ENSTTRP00000007929/1-943 ---------- ------MHKR KGP------- SGTPGR---- ---------- ENSP00000313601/1-951 ---------- ------MHKR KGP------- PGPPGR---- ---------- ENSBTAP00000007973/1-951 ---------- ------MHKK KGP------- PGPPGR---- ---------- bmy_04841T0/1-941 CSFSAAGPAS PVAALGFRGA QGPRRKWVGQ PGGRGREVGG RGAPTRGVGL BACU009395/1-999 ---------- ------MHKR KGP------- PGPPGR---- ---------- 51 100 ENSTTRP00000007929/1-943 ---------- GAATAR---- ---------- ---------- ------QLGL ENSP00000313601/1-951 ---------- GAAAAR---- ---------- ---------- ------QLGL ENSBTAP00000007973/1-951 ---------- GAATAR---- ---------- ---------- ------QLGL bmy_04841T0/1-941 RKGACAAIGP GGGQARGPVV RVSSLEDAQE EGTLPTLGLT EPPLFPQLGL BACU009395/1-999 ---------- GAATAR---- ---------- ---------- ------QLGL 101 150 ENSTTRP00000007929/1-943 LVDLSPDSLM IPEDGVNDQE LEAEFLALVG GQPQALEKLK GKXXXXMEAI ENSP00000313601/1-951 LVDLSPDGLM IPEDGANDEE LEAEFLALVG GQPPALEKLK GKGPLPMEAI ENSBTAP00000007973/1-951 LVDLSPDGLM IPEDGVNDEE LEAEFLALVG GQPQALEKLK GKGPLPMEAI bmy_04841T0/1-941 LVDLSPDGLM IPEDGVNDQE LEAEFLALVG GRPQALEKLK GKGPLPMEAI BACU009395/1-999 LVDLSPDGLM IPEDGVNDQE LEAEFLALVG GRPQALEKLK GKGPLPMEAI 151 200 ENSTTRP00000007929/1-943 ERMASLCMRD PDKDEEEGTD EEDVEADDD- LAELNEVLGE EQKALESHPP ENSP00000313601/1-951 EKMASLCMRD PDEDEEEGTD EDDLEADDDL LAELNEVLGE EQKASETPPP ENSBTAP00000007973/1-951 EKMASLCMRD PDEDEEEGTD EEDVEADDDL LAELNEVLGE EQKASESHPP bmy_04841T0/1-941 EKMASLCMRD PDKEEEEGTD EEDVEADDDL L--------- ---------- BACU009395/1-999 EKMASLCMRD PDKEEEEGTD EEDVEADDDL LAELNEVLGE EQKALESHPP 201 250 ENSTTRP00000007929/1-943 VAQPKATTPS PGLEATLQER LALYQTAIES ARQAGDGAKM RRYDRGLKTL ENSP00000313601/1-951 VAQPKPEAPH PGLETTLQER LALYQTAIES ARQAGDSAKM RRYDRGLKTL ENSBTAP00000007973/1-951 VAQPKATTPS PGLEATLQER LALYQTAIES ARQAGDSAKM RRYDRGLKTL bmy_04841T0/1-941 ---PKATTPS PGLEATLQER LALYQTAIES ARQAGDGAKM RRYDRGLKTL BACU009395/1-999 VAQPKATTPS PGLEATLQER LALYQTAIES ARQAGDGAKM RRYDRGLKTL 251 300 ENSTTRP00000007929/1-943 ENLLASVQKG KAIDEGDIPP PVAVGKGPVA TPSHIPAPTQ PVPTNPPAPD ENSP00000313601/1-951 ENLLASIRKG NAIDEADIPP PVAIGKGPAS TPTYSPAPTQ PAPRIASAPE ENSBTAP00000007973/1-951 ENLLASVRKG KAIDEGDIPP PVAVGKGPVA TPSHTPAPTQ PAPLNPLAPD bmy_04841T0/1-941 ENLLASVQKG KAIDEGDIPP PVAVGKGPVA TPSHTPAPSQ PVPTNPPAPD BACU009395/1-999 ENLLASVQKG KAIDEGDIPP PVAVGKGPVA TPSHTPAPSQ PVPTNPPAPD 301 350 ENSTTRP00000007929/1-943 PRVIVEGPPS TAPASSLVSA KPQLPSGPCS PGPPRSLAQL QSRQREYRLA ENSP00000313601/1-951 PRVTLEGPSA TAPASSPGLA KPQMPPGPCS PGP---LAQL QSRQRDYKLA ENSBTAP00000007973/1-951 PRVIVESPPS AAPSSSLASA KPQLPPGPCS PGP---LAQL QSRQREYKLA bmy_04841T0/1-941 SRVIVEGPPS TAPASSLVSA KPQLPSG--S PNT------- ---------- BACU009395/1-999 SRVIVEGPPS TAPASTLVSA KPQLPSGPCS PGP---LAQL QSRQREYKLA 351 400 ENSTTRP00000007929/1-943 ALRAKQQGDT ATAARHFRVA KSFDAVLEAL SRGEPVDLSR LPPPPDQLPP ENSP00000313601/1-951 ALHAKQQGDT TAAARHFRVA KSFDAVLEAL SRGEPVDLSC LPPPPDQLPP ENSBTAP00000007973/1-951 ALHAKQQGDT AAAAKHFRVA KSFDAVLEAL SRGEPVDLSR LPPPPDQLPQ bmy_04841T0/1-941 ---------- ---------- ---------- --CVPCSNTK MPSEPTRLAE BACU009395/1-999 ALRAKQQGDT ATAARHFRVA KSFDAVLEAL GRGEPVDLSR LPPPPDQLPP 401 450 ENSTTRP00000007929/1-943 DPPSLPPQPP TPAVVPSMPE VPAPPRTLLE ALEQRMERYC VAAAQAKTKG ENSP00000313601/1-951 DPPSPPSQPP TPATAPSTTE VPPPPRTLLE ALEQRMERYQ VAAAQAKSKG ENSBTAP00000007973/1-951 GPPSPPVQPP TPAVVPSTPE APPPPKTLLE ALEQRMERYH VAAAQAKTKG bmy_04841T0/1-941 ---------- -PWMWPS--- ---------- ---------C LC-------- BACU009395/1-999 DPPSLPPQPP TPAVVPSMPE VPAPPRTLLE ALEQRMERYC VAAAQAKTKG 451 500 ENSTTRP00000007929/1-943 DQRKARMHER IVKQYQDAIR AHKAGRAVDV AELPVPPGFP PIQGLEATEP ENSP00000313601/1-951 DQRKARMHER IVKQYQDAIR AHKAGRAVDV AELPVPPGFP PIQGLEATKP ENSBTAP00000007973/1-951 DQRKARMHER IVKQYQDAIR AHKAGRAVDV AELPVPPGFP PIQGLEATEP bmy_04841T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU009395/1-999 DQRKARMHER IVKQYQDTIR AHKAGRAVDV AELPLPPGFP PIQGLEATEP 501 550 ENSTTRP00000007929/1-943 TQQSLVGVLE TAVKLANQDE GPEDEDDEEP KK-LNSPAAP TAQPKAPPSK ENSP00000313601/1-951 TQQSLVGVLE TAMKLANQDE GPEDEEDEVP KK-QNSPVAP TAQPKAPPSR ENSBTAP00000007973/1-951 TQQSLVGVLE TAMKLANQDE GPEDEEDEEP KK-LSSPAAP TAQPKAPPSK bmy_04841T0/1-941 ---------- ---------- ---------P QQ-LNSPAAP TAQPKAPPSK BACU009395/1-999 TQQSLVGVLE TAMKLANQDE GPEDEEDEEP KKQLNSPAAP TAQPKAPPSK 551 600 ENSTTRP00000007929/1-943 APQSGSAPAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000313601/1-951 TPQSGSAPTA KAPPKATSTR AQQQLAFLEG RKKQLLQAAL RAKQKNDVEG ENSBTAP00000007973/1-951 APPSGSAPIA KAAPKGTSTR AQQQLAFLEG RKKQLLQAAL RAKQKNDVEG bmy_04841T0/1-941 APQSGSAPAA KAAPKGTSTR AQQQLAFLEG RRKQLLQAAL RAKQKNDMEG BACU009395/1-999 APQSGSAPAA KAAPKGTSTR AQQQLAFLEG RRKQLLQAAL RAKQKNDMEG 601 650 ENSTTRP00000007929/1-943 XXXXXXXXXX XXXXXXXXXN GLPVDITKVP PAPVNKDDFA LVQRPGPGLS ENSP00000313601/1-951 AKMHLRQAKG LEPMLEASRN GLPVDITKVP PAPVNKDDFA LVQRPGPGLS ENSBTAP00000007973/1-951 AKMHLRQAKG LEPMLEASRN GLPVDITKVP PAPVNKDDFA LVQRPGPGLS bmy_04841T0/1-941 AKMHLRQAKG LEPMLEASRN GLPVDIVKVP PAPVNKDDFA LVQRPGPGLS BACU009395/1-999 AKMYLRQAKG LEPMLEASRN GLPVDIAKVP PAPVNKDDFA LVQRPGPGLS 651 700 ENSTTRP00000007929/1-943 QESVRRYGEL TKLIRQQHEM CLNHSNQFTH LGNIAETSKF EKLAEDCKRS ENSP00000313601/1-951 QEAARRYGEL TKLIRQQHEM CLNHSNQFTQ LGNITETTKF EKLAEDCKRS ENSBTAP00000007973/1-951 QESARRYGEL TKLIRQQHEM CLNHSNQFTQ LGNIAETSKF EKLAEDCKRS bmy_04841T0/1-941 QESVRRYGEL TKLIRQQHEM CLNHSNQFTH LGNIAETSKF EKLAEDCKRS BACU009395/1-999 QESVRRYGEL TKLIRQQHEM CLNHSNQFTH LGNIAETSKF EKLADDCKRS 701 750 ENSTTRP00000007929/1-943 METLKQAFAR GLPTPTARFE QRTFSVIKIF PDLSSNDMLL FIVKGINLPT ENSP00000313601/1-951 MDILKQAFVR GLPTPTARFE QRTFSVIKIF PDLSSNDMLL FIVKGINLPT ENSBTAP00000007973/1-951 MEILKQAFAR GLPTPTARFE QRTFSVIKIF PDLSSNDMLL FIVKGISLPT bmy_04841T0/1-941 METLKQAFAR GLPTPTARFE QRTFSVIKIF PDLSSNDMLL FIVKGINLPT BACU009395/1-999 METLKQAFAR GLPTPTARFE QRTFSVIKIF PDLSSNDMLL FIVKGINLPT 751 800 ENSTTRP00000007929/1-943 PP-------- ---------- -------GLS PGDLDVFVRF DFPYPNVEEA ENSP00000313601/1-951 PP-------- ---------- -------GLS PGDLDVFVRF DFPYPNVEEA ENSBTAP00000007973/1-951 PP-------- ---------- -------GLS PGDLDVFVRF DFPYPNVEEA bmy_04841T0/1-941 PPGEGASGRG GAVGSTPLPS SDPHLPTGLS PGDLDVFVRF DFPYPNVEEA BACU009395/1-999 PP-------- ---------- -------GLS PGDLDVFVRF DFPYPNVEEA 801 850 ENSTTRP00000007929/1-943 QKDKTSVIKN TDSPEFKEQF KLCINRSHRG FRRAIQTKGI KFEVVHKGGL ENSP00000313601/1-951 QKDKTSVIKN TDSPEFKEQF KLCINRSHRG FRRAIQTKGI KFEVVHKGGL ENSBTAP00000007973/1-951 QKDKTSVIKN TDSPEFKEQF KLCINRSHRG FRRAIQTKGI KFEVVHKGGL bmy_04841T0/1-941 QKDKTSVIKN TDSPEFKEQF KLCINRGHRG FRRAIQTKGI KFEVVHKGGL BACU009395/1-999 QKDKTSVIKN TDSPEFKEQF KLCINRGHRG FRRAIQTKGI KFEVVHKGGL 851 900 ENSTTRP00000007929/1-943 FKTDRVLGTA QLKLDALETA CEVREILE-- ---------- ---------V ENSP00000313601/1-951 FKTDRVLGTA QLKLDALEIA CEVREILE-- ---------- ---------V ENSBTAP00000007973/1-951 FKTDRVLGTA QLKLDALETA CEVREVLE-- ---------- ---------V bmy_04841T0/1-941 FKTDRVLGTA QLKLDALETA CEVREILEVR GGRSSERSGM AVPLMNITQV BACU009395/1-999 FKTDRVLGTA QLKLDALETA CEVREILEVR GGHSSERSGM AVPLMNITQV 901 950 ENSTTRP00000007929/1-943 LDGRRPTGGR LEVMVRIREP LTAQQLETTT ERWLVIDPVP AAVPT----- ENSP00000313601/1-951 LDGRRPTGGR LEVMVRIREP LTAQQLETTT ERWLVIDPVP AAVPT----- ENSBTAP00000007973/1-951 LDGRRPTGGR LEVMVRIREP LTAQQLETTT ERWLVIDPVP ASVPT----- bmy_04841T0/1-941 LDGRRPTGGR LEVMVRIREP LTAQQLEXTT ERWLVIDPVP AAVPTVRPVP BACU009395/1-999 LDGRRPTGGR LEVMVRIREP LTAQQLETTT ERWLVIDPVP AAAPT----- 951 1000 ENSTTRP00000007929/1-943 ---------- ---------- -----QVAGP KAKAPPVPAP MREPGNRSAR ENSP00000313601/1-951 ---------- ---------- -----QVAGP KGKAPPVPAP ARESGNRSAR ENSBTAP00000007973/1-951 ---------- ---------- -----QVVGP KGKAPPIPAP TREPGNRSAR bmy_04841T0/1-941 SAAPGKEGGL VQGGQGSQDW FCPLKQVAGP KGKAPPVPAP VREPGNRSAR BACU009395/1-999 ---------- ---------- ------VAGP KGKAPPVPAP VREPGNRSAR 1001 1050 ENSTTRP00000007929/1-943 PLHSLSVLAF DLERLERKIL AFRQARRPVP PEMAQQYQDI IQRSQWQRAQ ENSP00000313601/1-951 PLHSLSVLAF DQERLERKIL ALRQARRPVP PEVAQQYQDI MQRSQWQRAQ ENSBTAP00000007973/1-951 PLHSLSVLAF DQERLERKIL GLRQARRPVP PEVAQQYQDI MQRSQWQRAQ bmy_04841T0/1-941 PLHSLSVLAF DQERLERKIL AFRQARRPVP PEVAQQYQDI IQRSQWQRAQ BACU009395/1-999 PLHSLSVLAF DQERLERKIL AFRQARRPVP PEVAQQYQDI IQRSQWQRAQ 1051 1100 ENSTTRP00000007929/1-943 ---------- QYVAQLERQL QFYTEAARRL GNDGSREAAK EALYRRNLVE ENSP00000313601/1-951 LEQGGVGIRR EYAAQLERQL QFYTEAARRL GNDGSRDAAK EALYRRNLVE ENSBTAP00000007973/1-951 LEQGGPGMRR EYMAQLERQL QFYTEAARRL GNDGSREAAK EALYRRNLVE bmy_04841T0/1-941 LEQGGPGIRR EYVAHLERQL QFYTEAARRL GNDGSREAAK EALYRRNLVE BACU009395/1-999 LEQGGPGIRR EYMAHLERQL QFYTEAARRL GSDGSREASK EALYRRNLVE 1101 1150 ENSTTRP00000007929/1-943 SE-------- ---------- ---------L QQLRR ENSP00000313601/1-951 SE-------- ---------- ---------L QRLRR ENSBTAP00000007973/1-951 SE-------- ---------- ---------L QRLRR bmy_04841T0/1-941 SEVRGLGIGD GVGSCGHVPN PDPGGLSPQL QRLRR BACU009395/1-999 SEVRGLGIGD GVGSCGHVPN PDPGGLSPQL QRLRR