KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:43 2014 Check: 00 .. Name: ENSTTRP00000009494/1-396 Len: 695 Check: 2580 Weight: 1.00 Name: BACU002697/1-659 Len: 695 Check: 3913 Weight: 1.00 Name: ENSP00000308926/1-505 Len: 695 Check: 3559 Weight: 1.00 Name: bmy_18845T0/1-505 Len: 695 Check: 5896 Weight: 1.00 Name: ENSBTAP00000007990/1-505 Len: 695 Check: 4461 Weight: 1.00 // 1 50 ENSTTRP00000009494/1-396 ---------- ---------- ---------- ---------- ---------- BACU002697/1-659 MLNRVRSAVA HLVSSGGAPP PRPKSPDLPN STSAPPAAPP QAPRSHPTXX ENSP00000308926/1-505 MLNRVRSAVA HLVSSGGAPP PRPKSPDLPN AASAPPAAA- ---------- bmy_18845T0/1-505 MLNRVRSAVA HLVSSGGAPP PRPRSPDLPN STSAPPAAP- ---------- ENSBTAP00000007990/1-505 KLNRVRSAVA HLVSSGGAPP SRPKSPDLPN ATSAPPAAP- ---------- 51 100 ENSTTRP00000009494/1-396 ---------- ---------- ---------- ---------- ---------- BACU002697/1-659 XXXXAPPQAP RSPPTRDGSG TAAPAKTVEA RASFSRPTFL QLSPGGLRRA ENSP00000308926/1-505 ------PEAP RSPPAKAGSG SATPAKAVEA RASFSRPTFL QLSPGGLRRA bmy_18845T0/1-505 ------PQAP RSPPARAGSG SAAPARTVEA RASFSRPTFL QLSPGGLRRA ENSBTAP00000007990/1-505 ------PQAP RSPPARAGSG GAAPARTVEA RASFSRPTFL QLSPGGLRRA 101 150 ENSTTRP00000009494/1-396 ---------- ---------- ------VINS GKSRHNEDQA CCEVVYVEGR BACU002697/1-659 DDHAGRAVQS PPDTGRRLPW STGYAEVINA GKSRHNEDQA CCEVVYVEGR ENSP00000308926/1-505 DDHAGRAVQS PPDTGRRLPW STGYAEVINA GKSRHNEDQA CCEVVYVEGR bmy_18845T0/1-505 DDHAGRAVQS PPDTGRRLPW STGYAEVINA GKSRHNEDQA CCEVVYVEGR ENSBTAP00000007990/1-505 DDHAGRAVQS PPDTGRRLPW STGYAEVINA GKSRHNEDQA CCEVVYVEGR 151 200 ENSTTRP00000009494/1-396 RSVSGAPREP SRGQGLCFYY WGLFDGHAGG RAAEMASRLL HRHIREQLKD BACU002697/1-659 RSVSGAPREP SRGQGLCFYY WGLFDGHAGG RAAEMASRLL HRHIREQLKD ENSP00000308926/1-505 RSVTGVPREP SRGQGLCFYY WGLFDGHAGG GAAEMASRLL HRHIREQLKD bmy_18845T0/1-505 RGVSGAPREP SRGQGLCFYY WGLFDGHAGG RAAEMASRLL HRHIREQLRD ENSBTAP00000007990/1-505 RSVSGAPREP SRGQGLCFYY WGLFDGHAGG GAAEMASRLL HRHIREQLKD 201 250 ENSTTRP00000009494/1-396 LVEILQDPSP PPLCLPSTPG APGSSDSSHL VGPQSCWSSQ KEVTHESLVV BACU002697/1-659 LVEILQDPSP PPLCLPSTPG APGSSDSSHL VGPQSCWSSQ KEVTHESLVV ENSP00000308926/1-505 LVEILQDPSP PPLCLPTTPG TPDSSDPSHL LGPQSCWSSQ KEVSHESLVV bmy_18845T0/1-505 LVEILQDPSP PPLCLPSTPG APGSSDSSHL VGPQSCWSSQ KEVTHESLVV ENSBTAP00000007990/1-505 LVEILQDPLP PPLCLPSTPG APGSSDSSQL VGPQSCWSSQ KEVTHESLVV 251 300 ENSTTRP00000009494/1-396 GAIENAFQFM DEQMARERHG HQVEGGCCAL VVVYLLGKVY VANAGDSRAI BACU002697/1-659 GAIENAFQLM DEQMARERRG HQVEGGCCAL VVVYLLGKVY VANAGDSRAI ENSP00000308926/1-505 GAVENAFQLM DEQMARERRG HQVEGGCCAL VVIYLLGKVY VANAGDSRAI bmy_18845T0/1-505 GAIENAFQLM DEQMARERRG HQVEGGCCAL VVVYLLGKVY VANAGDSRAI ENSBTAP00000007990/1-505 GAIENAFQLM DEQMARERRG HQVEGGCCAL VVVYLLGKVY VANAGDSRAI 301 350 ENSTTRP00000009494/1-396 IVRNGEIIPM SREFTPETER QRLQMLXXXX XXXXXXXXXX XXXXXXXXXX BACU002697/1-659 IVRNGEIIPM SREFTPETER QRLQTLGFLK PELLGGEFTH LEFPRRVQPK ENSP00000308926/1-505 IVRNGEIIPM SREFTPETER QRLQLLGFLK PELLGSEFTH LEFPRRVLPK bmy_18845T0/1-505 IVRNGEIIPM SREFTPETER QRLQTLGFLK PELLGGEFTH LEFPRRVQPK ENSBTAP00000007990/1-505 IVRNGEIIPM SREFTPETER QRLQLLGFLK PELLGGEFTH LEFPRRVQPK 351 400 ENSTTRP00000009494/1-396 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002697/1-659 ELGQRMLYRD QNMTGWAYKK IELEDLRFPL VCGEGKK--- ---------- ENSP00000308926/1-505 ELGQRMLYRD QNMTGWAYKK IELEDLRFPL VCGEGKKARV MATIGVTRGL bmy_18845T0/1-505 ELGQRMLYRD QNMTGWAYKK IELEDLRFPL VCGEGKKARM MATIGVTRGL ENSBTAP00000007990/1-505 ELGQRMLYRD QNMTGWAYKK IELEDLRFPL VCGEGKKARV MATIGVTRGL 401 450 ENSTTRP00000009494/1-396 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU002697/1-659 ---------- ---------- ---VRVYDLT QYEHCPDDVL VLGTDGLWDV ENSP00000308926/1-505 GDHSLKVCSS TLPIKPFLSC FPEVRVYDLT QYEHCPDDVL VLGTDGLWDV bmy_18845T0/1-505 GDHNLRVCSS TLPIKPFLSS FPEVRVYDLT QYEHCPDDVL VLGTDGLWDV ENSBTAP00000007990/1-505 GDHNLRVCSS TLPIKPFLSC FPEVRVYDLT QYEHCPDDVL VLGTDGLWDV 451 500 ENSTTRP00000009494/1-396 XXXXXXXXXX XXXXXXXXXX XXXX------ ---------- ---------- BACU002697/1-659 TSDCEVAATV DRVLSAYEPN DPSRIDKSLL FWTRHWSLST PLGVQGPTVA ENSP00000308926/1-505 TTDCEVAATV DRVLSAYEPN DHSR------ ---------- ---------- bmy_18845T0/1-505 TSDCEVAATV DRVLSAYEPN DPSR------ ---------- ---------- ENSBTAP00000007990/1-505 TSDCEVAATV DRVLSAYEPN DPSR------ ---------- ---------- 501 550 ENSTTRP00000009494/1-396 --XXXXXXXX XXXXXXXXXX XXX------- XFPN------ ---------- BACU002697/1-659 PAMAAIRKKL VIVGDGACGK TCLLIVFSKD QFPEVYVPTV FENYIADIEV ENSP00000308926/1-505 --YTALAQAL VLGARGTPRD RGW------- RLPN------ ---------- bmy_18845T0/1-505 --YTALAQAL VLGARGTPRD RGW------- RLPN------ ---------- ENSBTAP00000007990/1-505 --YTALAQAL VLGARGTPRD RGW------- RLPN------ ---------- 551 600 ENSTTRP00000009494/1-396 ---------- NKLGSAD--- ---------D ISVFVIPLGG PGSYS----- BACU002697/1-659 DGKQVELALW DTAGQEDYDR LRPLSYPDTD VILMCFSIDS PDSLENIPEK ENSP00000308926/1-505 ---------- NKLGSGD--- ---------D ISVFVIPLGG PGSYS----- bmy_18845T0/1-505 ---------- NKLGSGD--- ---------D ISVFVIPLGG PGSYS----- ENSBTAP00000007990/1-505 ---------- NKLGSGD--- ---------D ISVFVIPLGG PGSYS----- 601 650 ENSTTRP00000009494/1-396 ---------- ---------- ---------- ---------- ---------- BACU002697/1-659 WTPEVKHFCP NVPIILVGNK KDLRQDEHTR RELAKMKQEP VRSEEGRDMA ENSP00000308926/1-505 ---------- ---------- ---------- ---------- ---------- bmy_18845T0/1-505 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000007990/1-505 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000009494/1-396 ---------- ---------- ---------- ---------- ----- BACU002697/1-659 NRISAFGYLE CSAKTKEGVR EVFEMATRAG LQVRKNKRRR GCPIL ENSP00000308926/1-505 ---------- ---------- ---------- ---------- ----- bmy_18845T0/1-505 ---------- ---------- ---------- ---------- ----- ENSBTAP00000007990/1-505 ---------- ---------- ---------- ---------- -----