KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:47 2014 Check: 00 .. Name: ENSP00000299886/1-980 Len: 1004 Check: 403 Weight: 1.00 Name: ENSBTAP00000007999/1-979 Len: 1004 Check: 1304 Weight: 1.00 Name: ENSTTRP00000004916/1-875 Len: 1004 Check: 5474 Weight: 1.00 Name: bmy_10998T0/1-947 Len: 1004 Check: 3974 Weight: 1.00 Name: BACU011475/1-953 Len: 1004 Check: 3444 Weight: 1.00 // 1 50 ENSP00000299886/1-980 ---------- ---------- MATAATSPAL KRLDLRDPAA LFETHGAEEI ENSBTAP00000007999/1-979 ---------- ---------- MAAAAASSAL KRLDLRDPAA LFETHGAEEI ENSTTRP00000004916/1-875 ---------- ---------- ---------- ---------- ---------- bmy_10998T0/1-947 MAAGRYRRAE VPRGAADGSI MAATAASTAL KRLDLRDPAA LFESHGAEEI BACU011475/1-953 ---------- ---------- MAATAASTAL KRLDLRDPAA LFESHGAEEI 51 100 ENSP00000299886/1-980 RGLERQVRAE IEHKKEELRQ MVGERYRDLI EAADTIGQMR RCAVGLVDAV ENSBTAP00000007999/1-979 RGLERQVRAE IEHKKEELRQ MVGERYRDLI EAADTIGQMR RCAAGLVDAV ENSTTRP00000004916/1-875 ---------- ---------- ---------- ---------- ---------- bmy_10998T0/1-947 RGLERQVRAE IEHKKEELRQ MVGERYRDLI EAADTIGQMR RCAEGLVGAV BACU011475/1-953 RGLERQVRAE IEHKKEELRQ MVGERYRDLI EAVDTIGQMR RCAEGL---- 101 150 ENSP00000299886/1-980 KATDQYCARL RQAGSAAPRP PRAQQPQQPS QEKFYSMAAQ IKLLLEIPEK ENSBTAP00000007999/1-979 RATDQYCARL RQAGSAAPRP PRDPQPQQPS QEKFYSMAAQ IKLLLEIPEK ENSTTRP00000004916/1-875 ---------- ---------- -----PQQPS QEKFYSMAAQ IKLLLEIPEK bmy_10998T0/1-947 KATDQYCARL RQAGSAAPRP PRDPQPQQPY QEKFYSMAAQ IKLLLEIPEK BACU011475/1-953 ---------- ---------- -----PQQPS QEKFYSMAAQ IKLLLEIPEK 151 200 ENSP00000299886/1-980 IWSSMEASQC LHATQLYLLC CHLHSLLQLD SSSSRYSPVL SRFPILIRQV ENSBTAP00000007999/1-979 IWSSMEASRY LHATQLYLLC CYLHKLLQLE SSSSRHSPVL SRFPILIRQV ENSTTRP00000004916/1-875 IWSSMEASEY LHATQLYLLC CHLHKLLQLD PSTSRYSP-L SRFPILSQQL bmy_10998T0/1-947 IWSSMEASQY LHATQLYLLC CHLHKLLQLD SSSSRYSPVL SRFPILIQQL BACU011475/1-953 IWSSMEASQY LHATQLYLLC CHLHKLLQLD SSSSRYSPVL SRFPILIQQL 201 250 ENSP00000299886/1-980 AAASHFRSTI LHESKMLLKC QGVSDQAVAE ALCSIMLLEE SSPRQALTDF ENSBTAP00000007999/1-979 AAASHFRSTI LHESKMLLKC QAVSDQAVAE ALCSIMLLEE SSPRQALTDF ENSTTRP00000004916/1-875 AAASHFRXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10998T0/1-947 AAASHFRSAI LHESKMLLTC QAVSDQAVAE ALCSVMLLEE SSPRQALADF BACU011475/1-953 AAASHFRSAI LHESKMLLTC QAVSDQAVAE ALCSVMLLED SSPRQALADF 251 300 ENSP00000299886/1-980 LLARKATIQK LLNQPHHGAG IKAQICSLVE LLATTLKQAH ALFYTLPEGL ENSBTAP00000007999/1-979 LLARKAAIQK LLNQPHHGAG IKAQICSLVE LLATTLNQAH ALFYTLPEGL ENSTTRP00000004916/1-875 XXXXXXXXXK LLNQQHHGAG VKSQICSLVE LLATTLNQAH ALFYTLPEGL bmy_10998T0/1-947 LLARKAAIQK LLNQQHH--- ---------- ---------- ---------- BACU011475/1-953 LLARKAAIQK LLNQQHHGAG VKSQICSLVE LLATTLNQAH ALFYTLPEGL 301 350 ENSP00000299886/1-980 LPDPALPCGL LFSTLETITG QHPAGKGTGV LQEEMKLCSW FKHLPASIVE ENSBTAP00000007999/1-979 LPDPLLPCGL LFSTLDSITS QHPSGKGVWV LQDEMKLCSW FKHLPASVVE ENSTTRP00000004916/1-875 LPDPSLPCGM LLSTLDNITG QHPTGKGIGV LQEGMKLCSW FKHLPASVVE bmy_10998T0/1-947 ---------- ---------- ----GKGIGV LQEDMKLCSW FKHLPASVVE BACU011475/1-953 LPDPSLPCGM LLSTLDNVTG QHPTGKGIGV LQEDMKLCSW FKHLPASVVE 351 400 ENSP00000299886/1-980 FQPTLRTLAH PISQEYLKDT LQKWIHMCNE DIKNGITNLL MYVKSMKGLA ENSBTAP00000007999/1-979 FQPALRTLAH PISQEYLKDT LQKWIHVCNE DIRNGISSLL MYVTSTKGLA ENSTTRP00000004916/1-875 FQPALRTLAR PISQEYLKDT LQKWIHMCNE DIKNGISNLL MYVTSMKGLA bmy_10998T0/1-947 FQPALRTLAR PISQEYLKDT LQKWIHMCNE DIKNGISDLL MYVTNMKGLA BACU011475/1-953 FQPALRTLAH PISQEYLKDT LQKWIHMCNE DIKNGISNLL MYVTSMKGLA 401 450 ENSP00000299886/1-980 GIRDAMWELL TNESTNHSWD VLCRRLLEKP LLFWEDMMQQ LFLDRLQTLT ENSBTAP00000007999/1-979 GIRDAVWGLL ANESIHHSWD VVCRRLLDKP LLFWEDLMQQ LFLDRLQTLT ENSTTRP00000004916/1-875 AIRDATWELL ANESIHHSWD VICRRLLDRP LLFWEDLMQQ LFLDRLQTLT bmy_10998T0/1-947 AIRDAMWELL ANESIHHSWD VICRRLLDRP LLFWEDLMQQ LFLDRLQTLT BACU011475/1-953 AIRDAMWELL ANESIHHSWD VICRRLLDRP LLFWEDLMQQ LFLDRLQTLT 451 500 ENSP00000299886/1-980 KEGFDSISSS SKELLVSALQ ELESSTSNSP SNKHIHFEYN MSLFLWSESP ENSBTAP00000007999/1-979 KEGFDSISSS STELLTSALQ ELES--SSSA SSKHLHFEHN MAVFLWSESP ENSTTRP00000004916/1-875 KEGFDSISSS SKELLISALR ELESSASSST SN-HIHFEHN MALFLWSESP bmy_10998T0/1-947 KEGFDSISSS SKELLISALR ELESSTSSST SNKHIHFEHN MSLFLWSESP BACU011475/1-953 KEGFDSISSS SKELLISALR ELESSTSSST SNKHIHFEHN MSLFLWSESP 501 550 ENSP00000299886/1-980 NDLPSDAAWV SVANRGQFAS SGLSMKAQAI SPCVQNFCSA LDSKLKVKLD ENSBTAP00000007999/1-979 SDLPSDAAWV SVSSRAPFQG SGLSMKAQAI SPCVQSFCSA LDSKLKVKLE ENSTTRP00000004916/1-875 SDLPPDAAWV SVSNRAQFPG SGLSMKAQAV SPCVQSFCSA LDSKLKVKLE bmy_10998T0/1-947 SDLPPDAAWV SVSNRAQFPG SGLSMKAKAV SPCVQSFCSA LDSKLKVKLE BACU011475/1-953 SDLPPDAAWV SVSNRAQFPG SGLSMKAKAI SPCVQSFCSA LDSKLKVKLE 551 600 ENSP00000299886/1-980 DLLAYLPSDD SSLPKDVSPT QAKSSAFDRY ADAGTVQEML RTQSVACIKH ENSBTAP00000007999/1-979 DLLAYLPSGD PLPRQDTSPA AAESCAFDRF ADAETVQETL RTHSTACIRD ENSTTRP00000004916/1-875 DLLAYLPSGD PSPPKEVSPA QARNCAFDRY ADAGTVQEML QMHSTACVRH bmy_10998T0/1-947 DLLAYLPSGD PSPPKDVSPA RARHCAFDRY ADAGTVQEML QMHSAACVRR BACU011475/1-953 DLLAYLPSGD PSPLKDVSPA QARHCAFDRY ADAGTVQEML QMHSAACVGH 601 650 ENSP00000299886/1-980 IVDCIRAELQ SIEEGVQGQQ DALNSAKLHS VLFMARLCQS LGELCPHLKQ ENSBTAP00000007999/1-979 ITDCIQAELQ SIEQAIQGQQ DVLDGAKLHS ALFMARLCQS LGELCPHLKQ ENSTTRP00000004916/1-875 ITDCVQAELQ RIQQAIQGQQ DALDGVKLHS VLFMARLCQS LGELCPHLKQ bmy_10998T0/1-947 ITDCVRAELQ SAQQAIQGQQ DALDGVQLHS VLFMARLCQS LGELCPHLKQ BACU011475/1-953 ITDCVQAELQ SIQQAVQGQQ DALDGVQLHS VLFMARLCQS LGELCPHLKH 651 700 ENSP00000299886/1-980 CILGKSESSE KPAREFRALR KQGKVKTQEI IPTQAKWQEV KEVLLQQSVM ENSBTAP00000007999/1-979 CILGRSGSPE KPAQDSRALK KQGKGKAQEV LPTQARWQDV KELLLQRSVT ENSTTRP00000004916/1-875 CILGKSGSTE KPARDSRALK KQGKGKTQEI VPMQAKWQEV KELLLQQSVM bmy_10998T0/1-947 CILGKSGSTE KPARDSRALK KQGKGKTQEI IPMQAKWQEV KELLLQQSVM BACU011475/1-953 CILGKSGSTE KPARDSRALK KQGKGKTQEI IPMQAKWQEV KELLLQQSVM 701 750 ENSP00000299886/1-980 GYQVWSSAVV KVLIHGFTQS LLLDDAGSVL ATATSWDELE IQEEAESGSS ENSBTAP00000007999/1-979 GYRVWGSAVV RVLAHGFAQS LLVDDAGSIL ATATSWDELE IQEEAESGSS ENSTTRP00000004916/1-875 GYRVWSSAVV KVLAHGFTQS LLLDDAGSVL ATATSWDELE IQEEAESGSS bmy_10998T0/1-947 GYRVWSSAVV KVLAHGFTQS LLLDDAGSVL ATATSWDEVE IQEEAESGSS BACU011475/1-953 GYRVWSSAVV KVLAHGFTQS LLLDDAGSVL ATATSWDEVE IQEEAESGSS 751 800 ENSP00000299886/1-980 VTSKIRLPAQ PSWYVQSFLF SLCQEINRVG GHALPKVTLQ EMLKSCMVQV ENSBTAP00000007999/1-979 ITSKIRLPVQ PSWYVQSFLF SLCQEINRVG GHALPKVTLQ EMLKSCLGRV ENSTTRP00000004916/1-875 VTSKIRLPVQ PSWYVQSFLL SLCQEINRVG GHALPKVTLQ EMKAXXXXXX bmy_10998T0/1-947 VTSKIRLPVQ PSWYVQSFLL SLCQEINRVG GHALPKVTLQ EMLKSCLVQV BACU011475/1-953 VTSKIRLPVQ PSWYVQSFLL SLCQEINRVG GHALPKVTLQ EMLKSCVVQV 801 850 ENSP00000299886/1-980 VAAYEKLSEE KQIKKEGAFP VTQNRALQLL YDLRYLNIVL TAKGDEVKSG ENSBTAP00000007999/1-979 AAAYERLSEA KQLKKEGAFP MTQNRALQLL YDLRYLSVVL TAKGEEMKSG ENSTTRP00000004916/1-875 XXXXXXXXXX XXXXKEGAFP MTQNRALQLL YDLRYLNIVL TTKGEELKSG bmy_10998T0/1-947 VAAYEKLSEE KQVKKEGAFP MTQNRALQLL YDLRYLHIVL TTKGEEVKSG BACU011475/1-953 VAAYEKLSEE KQVKKEGAFP MTQNRALQLL YDLRYLHIVL TTKGEEVKSG 851 900 ENSP00000299886/1-980 RSKPDSRIEK VTDHLEALID PFDLDVFTPH LNSNLHRLVQ RTSVLFGLVT ENSBTAP00000007999/1-979 RCRQDSRVEK VADYLETLID PFDLDVFTPH LHSNLNRLVQ RTSVLFGLVT ENSTTRP00000004916/1-875 RSKQDPRVEK VADYLEALID PFDLDVFTPH LHGNLNRLVQ RTSVLFGLVT bmy_10998T0/1-947 RSKQDPRVEK VADYLEALID PFDLDVFTPH LHGNLNRLVQ RTSVLFGLLT BACU011475/1-953 RSKQDPRVEK VADYLEARID PFDLDVFTPH LHGNLNRLVQ RTSVLFGLLT 901 950 ENSP00000299886/1-980 GTENQLAPRS STFNSQEPHN ILPLASSQIR FGLLPLSMTS TRKAKST-RN ENSBTAP00000007999/1-979 GPENQFTPRS STFNSQEAHN ILPLASSQIR FGLLPLSMTS TRKAKSAGGS ENSTTRP00000004916/1-875 ATENHFTPRS STFSSQEAHN VLPLASSQIR FGLLPLSMTS PRKAKSAGRS bmy_10998T0/1-947 GTENQFTPRS STFNSQEAHN ILPLASSQIR FGLLPLSMTS TRKAKSAGRS BACU011475/1-953 GTENQFTPRS STFNSQEAHN ILPLASSQIR FGLLPLSMTS TRKAKSAGRS 951 1000 ENSP00000299886/1-980 IETKA---QV VPPARSTAGD PTVPGSLFRQ LVSEEDNTSA PSLFKLGWLS ENSBTAP00000007999/1-979 MDTKA---QA APPALSRADD PRQAGSLFRQ LVADEEDSAA PSLFKLGWLS ENSTTRP00000004916/1-875 IETRA--QAA VPPALSRADD LTHAGSLFRQ LVAEEEDSSA PSLFKLGWLS bmy_10998T0/1-947 VETRAQRQAA VPPALSRADD PTHAGSLFRQ LVTEEEDSSA PSLFKLGWLS BACU011475/1-953 IETRA--QAA VPPALSRADD PTHAGSLFRQ LVAEEEDSSA PSLFKLGWLS 1001 1050 ENSP00000299886/1-980 SMTK ENSBTAP00000007999/1-979 SMTK ENSTTRP00000004916/1-875 SMTK bmy_10998T0/1-947 SMTK BACU011475/1-953 SMTK