KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:33:47 2014 Check: 00 .. Name: ENSP00000351937/1-609 Len: 616 Check: 5089 Weight: 1.00 Name: ENSBTAP00000008001/1-568 Len: 616 Check: 9547 Weight: 1.00 Name: bmy_11000T0/1-510 Len: 616 Check: 6726 Weight: 1.00 Name: ENSTTRP00000004933/1-593 Len: 616 Check: 135 Weight: 1.00 // 1 50 ENSP00000351937/1-609 MSDNPPRMEV CPYCKKPFKR LKSHLPYCKM IGPTIPTDQK VYQSKPATLP ENSBTAP00000008001/1-568 KSAVPPRMEL CPYCKKPFKR LKSHLPHCKM LGATMPADQE IHQCEPATLA bmy_11000T0/1-510 -------MEV CPYCKKPFKR LKSHLPYCKM IGQAVPA--- VCQSKPATLP ENSTTRP00000004933/1-593 -RAIPPRMEV CPYCKKPFKR LKSHLPYCKM IGPAVPA--- VCQSKPATLA 51 100 ENSP00000351937/1-609 RAKKMKGPIK DLIKAKGKEL ETENEERNSK LVVDKPE-QT VKTFPLPAVG ENSBTAP00000008001/1-568 RGKKIKAPIR DSIKAKEKEL GTDSKKRNPE LKGNNSE-RT VKSSSALAVG bmy_11000T0/1-510 RAKKIKGPIR DSVKAKEKGL GTDSKKRNPE LKEDRSEQQT VKSSSRLAVG ENSTTRP00000004933/1-593 RAKKIKGPIR DSVKAKEKGL GTDSKKRNPE LKGDRSEQQT VKSSPRLSVG 101 150 ENSP00000351937/1-609 LERAATTKAD KDIKNPIQPS FKMLKNTKPM TTFQEETKAQ FYASEKTSPK ENSBTAP00000008001/1-568 LEKASHKKAD ENVKSQVKPS LKMLKDTKPK VASRGETTTQ FSASENTSST bmy_11000T0/1-510 LXKTGNTKAD KDFKNQIQPS LKMLKNTEPK ITFQGETTAQ FSASENTTPK ENSTTRP00000004933/1-593 LEKTSNTKAD KDFKNQIQPS LKMLKNTEQK ITSQGETTAQ FSASENTTPK 151 200 ENSP00000351937/1-609 RELAKDLPKS GESRCNPSEA GASLLVGSIE PSLSNQDRKY SSTLPNDVQT ENSBTAP00000008001/1-568 KELAKALPQL GESRANPSEI EAPLPPGPVA PSRSNHDRKY SLAFLNDVQA bmy_11000T0/1-510 KELAEDLSKS GESRNNPSET EASLALGPME PSLSNQDRKY SSAFPNDVQA ENSTTRP00000004933/1-593 KELAEDLSKS GESRNNPSET EASLALGPME PSLSNQDRKY SSAFPNDVQA 201 250 ENSP00000351937/1-609 TSGDLKLDKI DPQRQELLVK LLDVPTGDCH ISPKNVSDGV KRVRTLLSN- ENSBTAP00000008001/1-568 TSADLRLDRV DASRQNLLVK LFNTSLGDGH SSPVNCSHRV QRGNMSSSGR bmy_11000T0/1-510 ISADLRLDRV DAPRQNLLIK LPDMPLGDYH SSPTNLNYEV KRVSTSSSS- ENSTTRP00000004933/1-593 ASADLRLDRV DAPRQNLLIK LLDMPLGDYH SSPTNLNYGV ERVSTSSSS- 251 300 ENSP00000351937/1-609 ERDSKGRDHL SGVPTDVTVT ETPEKNTESL ILSLKMSSLG KIQVMEKQEK ENSBTAP00000008001/1-568 ERDSKAEDHL LGVSTDRN-F RTLAKNAESQ IAALKLNPLG KSQGRENQGK bmy_11000T0/1-510 ERDSKAGDHL LGVST-RD-S GTWEKNTESQ IAAFKVSPLG KIQVKENQGK ENSTTRP00000004933/1-593 ERDSKAGDHL LGVST-RD-S GTWEKNTESQ IAAFKVSPLG KVQVKENQGK 301 350 ENSP00000351937/1-609 GLTLGVETCG SKGNAEKSMS ATEKQERTVM SHGCENFNTR DSVTGKESQG ENSBTAP00000008001/1-568 ALHLGAETYG SQGGVEKSVS VTEMQDWASL SH-------- DSVTEKKPQD bmy_11000T0/1-510 GLDLGAEACG SQGNAEKSAF ATEMQEWAAV SD-------- DSVMERKSRG ENSTTRP00000004933/1-593 GLDLGAEACG SQGNAEKSAF ATEMQEWAAV SD-------- DSVMERKSRG 351 400 ENSP00000351937/1-609 ERPHLSLFIP RETTY-QFHS VSQSSSQSLA SLATTFLQEK KAEAQNHHCV ENSBTAP00000008001/1-568 RGPGVHVFPL MGTTCPERLP LAQSRNQSPA SLAVKFLQEE KAEAGSRNRG bmy_11000T0/1-510 EG------LP TGTNCSELLS VSQSRNQSLA SLAMKFLQEE KAEACSHNQV ENSTTRP00000004933/1-593 EGPNLELLTP TGTNCSELLS LSQSRNQSLA SLAMKFLQEE KAEACSRNQV 401 450 ENSP00000351937/1-609 PDVKALMESP EGQLSLEPKS DSQFQASHTG CQSPLCSAQR HTPQSPFTNH ENSBTAP00000008001/1-568 PAVKALMAGE E-WASLTSKL GSWPPASCPQ GLQSAHSAQH HASRSPLASQ bmy_11000T0/1-510 PAMKALTKSE E-QASLTPKL GCRPPALHPR GQHSAHSTPH HASKSPFTGQ ENSTTRP00000004933/1-593 PAMKALTKSE E-QASLTPKS GRRPPASHPR GQHSAHSTHH HASKGPFTGQ 451 500 ENSP00000351937/1-609 AAAAGRKTLR SCMGLEWFPE LYPGYLGLGV LPGKPQCWNA MTQKPQL-IS ENSBTAP00000008001/1-568 -------SLS SALGLEWFPE LYPGYLGLGV LPERPQRWST LAQKPLLVIS bmy_11000T0/1-510 IGATDRKTLS SSLGLEWFPE LYPGYLGLGV LPGKPQHWGT LAQKPAL-IS ENSTTRP00000004933/1-593 IGATDRKTLS SSLGLEWFPE LYPGYLGLGV LPGKPQHWGT LAQKPAL-IN 501 550 ENSP00000351937/1-609 PQGERLSQ-- -VSLLERSST HIRSLEPPAG LTTSNFSLMR LLGAVQKGWI ENSBTAP00000008001/1-568 PQGERLSQGT LVPWLERSTT AVRSLEAPA- ----SSSLRR LLGAVHTGWI bmy_11000T0/1-510 TQGESCSQGK HAPAPVQAHP DSSVPFESVR FRTPTFSLT- ---------- ENSTTRP00000004933/1-593 TQGGSCSQ-- -VPLLERSST AVRSLEAPAR LTTSSFSLRR LLGAVQTGWI 551 600 ENSP00000351937/1-609 RCNTTIRKSG FGGITMLFTG YFVLCCSWSF RRLKKLCRPL PWKSTVPPCI ENSBTAP00000008001/1-568 RCRTSVR-SG VGGLTLLFTG CFVLCCSWSF KHLK----LQ RWRHQR---- bmy_11000T0/1-510 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004933/1-593 RCRTTVQNRG VGGIVMLFTG CFVLCCSWSF KHLK--CQAL PQMDRTPPCV 601 650 ENSP00000351937/1-609 GVAKTTGDCR SKTCLD ENSBTAP00000008001/1-568 ---------- ------ bmy_11000T0/1-510 ---------- ------ ENSTTRP00000004933/1-593 GGMKRTGDLR SEAFS-