KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:48 2014 Check: 00 .. Name: ENSP00000358217/1-707 Len: 779 Check: 3795 Weight: 1.00 Name: ENSBTAP00000008009/1-707 Len: 779 Check: 2462 Weight: 1.00 Name: ENSTTRP00000004428/1-718 Len: 779 Check: 4250 Weight: 1.00 Name: bmy_18229T0/1-766 Len: 779 Check: 2670 Weight: 1.00 Name: BACU002822/1-288 Len: 779 Check: 7997 Weight: 1.00 // 1 50 ENSP00000358217/1-707 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000008009/1-707 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000004428/1-718 ---------- ---------- ---------- ---------- ---------M bmy_18229T0/1-766 AVHARPRHSE GGEHTSGRGS PASVRLRLCR SRPAEDPVRP SACLAAAAAM BACU002822/1-288 ---------- ---------- ---------- ---------- ---------M 51 100 ENSP00000358217/1-707 HGAARAPATS VSADCCIPAG LRLGPVPGTF KLGKYLSDRR EPGPKKK--- ENSBTAP00000008009/1-707 HGAARAPATS VSADCCIPAG LRLGPVPGTF KLGKYLSDRR EPGPKKK--- ENSTTRP00000004428/1-718 HGAARAPATS VSADCCIPAG LRLGPVPGTF KLGKYLSDRR EPGPKKKVLA bmy_18229T0/1-766 HGAARAPATS VSADCCIPAG LRLGPVPGTF KLGKYLSDRR EPGPKKK--- BACU002822/1-288 HGAARATATS VSADCCIPAG LRLGPVPGTF KLGKYLSDRR EPGPKKK--- 101 150 ENSP00000358217/1-707 -------VRM VRGELVDESG GSPLEWIGLI RAARNSQEQT LEAIADLPGG ENSBTAP00000008009/1-707 -------VRM VRGELVDESG GSPLEWIGLI RAARNPQEQT LEAIADLPGG ENSTTRP00000004428/1-718 IPTSAPQVRM VRGELVDESG GSPLEWIGLI RAARNPQEQT LEAIADLPGG bmy_18229T0/1-766 -------VRM VRGELVDESG GSPLEWIGLI RAARNPQEQT LEAIADLPGG BACU002822/1-288 -------VRM VRGELVDESG GSPLEWIGLI RAARNPQEQT LEAIADLPGG 151 200 ENSP00000358217/1-707 QIFYRALRDV QPGEELTVWY SNSLAQWFDI PTTATPTHDE KGEERYICWY ENSBTAP00000008009/1-707 QIFYRALRDV QPGEELTVWY SNSLAQWFDI PIIATPTHDE KGEERYICWY ENSTTRP00000004428/1-718 QIFYRALRDV QPGEELTVWY SNSLAQWFDI PTTATPTHDE KGEERYICWY bmy_18229T0/1-766 QIFYRALRDV QPGEELTVWY SNSLAQWFDI PTIATPTHDE KGEERYICWY BACU002822/1-288 QIFYRALRDV QPGEELTVWY SNSLAQWFDI PTIATPTHDE KGTA------ 201 250 ENSP00000358217/1-707 CWRTFRYPNS LKAHLRFHCV FSGGGGGAFL HHEHAARQGA VPAADGLGLS ENSBTAP00000008009/1-707 CWRTFRYPNS LKAHLRFHCV LSSGGGRAYL HHEHAARQGA APAADGLRLS ENSTTRP00000004428/1-718 CWRTFRYPNS LKAHLRFHCV LSSGGGRAYL HHEHTARQGA APAADGLRLS bmy_18229T0/1-766 CWRTFRYPNS LKAHLRFHCV LSSGGGRAYL HHEHTARQGA APAADGLRLS BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000358217/1-707 PKPPAPDFAA PSQAGTLRPH PLGPPPVQAC GAREGIKREA SSAPSATSPT ENSBTAP00000008009/1-707 PKPPASDFAA AAPASTLRPH PQVPPAPQAC GARESIKREA SSAPSATSPT ENSTTRP00000004428/1-718 PKPPAPDFAA AAPAGTLRAH PQVPPALQAC GARESIKREA SSAPSATSPP bmy_18229T0/1-766 PKPPAPDFAA AAPAGTLRAH PQVPPALQAC GARESIKREA SSVPSATSPP BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000358217/1-707 PGKWGQPKKG KEQLDRALDM SGAARGQGHF LGIVGGSSAG VGSLAFYPGV ENSBTAP00000008009/1-707 LAKWGPSKKG KEQPDRALDM SGPARGHGHF LGIVGGSPAG GGGLAFYPGV ENSTTRP00000004428/1-718 LAKWGPSKKG KEQPERILDM SGAARGHGHF LGIVGGSPAG GGGLAFYPGV bmy_18229T0/1-766 LAKWGPSKKG KEQPERILDM SGAARGHGHF LGIVGGSPAG GGGLAFYPGV BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000358217/1-707 RSAFKPAGLA RAAAAAHGDP YREESSSKQG AGLALGRLLG GGRACGRPGS ENSBTAP00000008009/1-707 RSAFKPTGLA RAAAAAHGDP YRDEGGGKPG AGLALSRLLG GGRAGGHPRS ENSTTRP00000004428/1-718 RSAFKPAGLA RAAAAAHCDP YREEGGGKPG ASLALSRLLG GGRVGGRPGS bmy_18229T0/1-766 RSAFKPAGLA RAAADAHCDP YREEGGGKPG ASLALSRLLG GGRPGGRPGS BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000358217/1-707 GENSAAGGAG HHHHHHA--H HHHHPKCLLA GDPPPPPPPG LPCSGALRGF ENSBTAP00000008009/1-707 GENPAAGGAG HHHHHHA--H HHHHPKCLLA GD--PPPPPG LPCSGALRGF ENSTTRP00000004428/1-718 GENPAAGEAG HHHHHHAHHH HHHHPKCLLA GD--PPPPPG LPCSGALRGF bmy_18229T0/1-766 GENAAAGEAG HHHHHHAHHH HHHHPKCLLA GD--PPPPPG LPCSGALRGF BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000358217/1-707 PLLSVPPEEA SAFKHVERAP PAAAALPGAR YAQLPPAPGL PLERCALPPL ENSBTAP00000008009/1-707 PLLSGPPEEA SAFKHVERAP PAAADVPGVR YAQLPPAAGL PLERCSLPPL ENSTTRP00000004428/1-718 PLLPGPPEEA SAFKHVERAP PAAAELPGAR YAQLPPAAGL PLERCVLPAL bmy_18229T0/1-766 PLLPRPPEEA SAFKHVERAP PAAAELPGAR YAQLPPAAGL PLERCVLPAL BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000358217/1-707 DPGGLKAYPG GECSHLPAVM PAFTVYNGEL LYGSPATTAY YPLKLHFGGL ENSBTAP00000008009/1-707 DAGGLKGYPG GECSHLPAVM PAFTVYNGEL LYGSPAAAAY YPLKLHFGGL ENSTTRP00000004428/1-718 DAGGLKGYPG GECSHLPAVM PAFTVYNGEL LYGSPAAATY YPLKLHFGGL bmy_18229T0/1-766 DAGGLKGYPG GECSHLPAVM PAFTVYNGEL LYGSPAAATY YPLKLHFGGL BACU002822/1-288 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000358217/1-707 LKYPESISYF SGPAAA---- -----ALSPA ELGSLASIDR EIAMHNQQLS ENSBTAP00000008009/1-707 LKYPESISYF SGPAAAA--- -----ALSPA ELGSLASIDR EIAMHTQQLS ENSTTRP00000004428/1-718 LKYPESLSYF SGPAAA---- -----ALSPA ELGSLATIDR EIAMHTQQLS bmy_18229T0/1-766 LKYPESLSYF SGPAAAAAAA AAAATALSPA ELSSLASIDR EIAMHTQQLS BACU002822/1-288 ---------- ---------- ---------- ---------- ---------S 601 650 ENSP00000358217/1-707 EMAAGKGRGR LDSGTLPPAV AAAGGTGGGG SGGS-GAGKP KTGHLCLYCG ENSBTAP00000008009/1-707 EMAAGKGRSR LDAGTLPPAV VAAGGAGGGG SGGGSGAGKP KTGHLCLYCG ENSTTRP00000004428/1-718 EMAAGKGRGR LDAGTLPAAV VAAGGAGGCS SGGG-GAGKP KTGHLCLYCG bmy_18229T0/1-766 EMAAGKGRGR LDAGTLPAAV VAAGGAGGCG SGGG-GAGKP KTGHLCLYCG BACU002822/1-288 EKAVG----- ---------- ---------- -GGG-GAGKP KTGHLCLYCG 651 700 ENSP00000358217/1-707 KLYSRKYGLK IHMRTHTGYK PLKCKVCLRP FGDPSNLNKH IRLHAEGNTP ENSBTAP00000008009/1-707 KLYSRKYGLK IHMRTHTGYK PLKCKVCLRP FGDPSNLNKH IRLHAEGNTP ENSTTRP00000004428/1-718 KLYSRKYGLK IHMRTHTGYK PLKCKVCLRP FGDPSNLNKH IRLHAEGNTP bmy_18229T0/1-766 KLYSRKYGLK IHMRTHTGYK PLKCKVCLRP FGDPSNLNKH IRLHAEGNTP BACU002822/1-288 KLYSRKYGLK IHMRTHTGYK PLKCKVCLRP FGDPSNLNKH IRLHAEGNTP 701 750 ENSP00000358217/1-707 YRCEFCGKVL VRRRDLERHV KSRHPGQSLL AKAGDGPGAE PGYPPEPGDP ENSBTAP00000008009/1-707 YRCEFCGKVL VRRRDLERHV KSRHPGQNLL PKASDGPGAE PHYPPEPGEP ENSTTRP00000004428/1-718 YRCEFCGKVL VRRRDLERHV KSRHPGQNLL AKAADGPGAE PDYPQEPGEP bmy_18229T0/1-766 YRCEFCGKVL VRRRDLERHV KSRHPGQNLL AKAADGPGAE PDYPPEPGEP BACU002822/1-288 YRCEFCGKVL VRRRDLERHV KSRHPGQNLL AKAADGPGVE PDYPPEPGEP 751 800 ENSP00000358217/1-707 KSD-DSDVDV CFTDDQSDPE VGGGGERDL ENSBTAP00000008009/1-707 KSDNDSDVDV CFTDDQSDPE AGGGGERD- ENSTTRP00000004428/1-718 KSDNDSDVDV CFTDDQSDPE AGGGGERDS bmy_18229T0/1-766 KSENDSDVDV CFTDDQSDPE AGGGGERDS BACU002822/1-288 KSDNDSDVDV CFTDDQSDPE AGGGGERDS