KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:54 2014 Check: 00 .. Name: ENSP00000399938/1-715 Len: 732 Check: 6944 Weight: 1.00 Name: ENSBTAP00000008039/1-672 Len: 732 Check: 4340 Weight: 1.00 Name: ENSTTRP00000015741/1-716 Len: 732 Check: 3603 Weight: 1.00 Name: bmy_02740T0/1-680 Len: 732 Check: 5758 Weight: 1.00 Name: BACU009188/1-720 Len: 732 Check: 5202 Weight: 1.00 // 1 50 ENSP00000399938/1-715 MPLPEPSEQE GESVKAGQEP S---PKPGTD VIPAAPRKPR EFSKLVLLTA ENSBTAP00000008039/1-672 MPLPEPSEQE GESVKAGQEP SPEPPEPGTD VVLEAPTKPM EFSELVLLAA ENSTTRP00000015741/1-716 MPLPEPSEQE GESVKAGQEP SPESPEPGTD VVPAAPTKPT EFSELVLLTA bmy_02740T0/1-680 MPLPAPSEQE GESVKAGQEP SPESPEPGTD VVPAAPTKPT EFSELVLLTA BACU009188/1-720 MPLPEPSEQE GESVKAGQEP SPESPEPGTD VVPAAPRKPT EFSELVLLTA 51 100 ENSP00000399938/1-715 SDQDEDGVGS KPQEVHCVLS LEMAGPATLA STLQILPVEE QGGVVQPALE ENSBTAP00000008039/1-672 STESGDGMDT QPEEVHCVLT LEMADPDTLA GTPQILPVEE QCGVVQPRPQ ENSTTRP00000015741/1-716 STENGDGVDS QPKAVHCVLS LEMSGPDTLA GTPQILPVEE QQGAVQPSPQ bmy_02740T0/1-680 STENGDGVDS QPKAVHCVLS LEMSGPDTLA GSPQILPVEE QQGAVQPSPQ BACU009188/1-720 STENGDGVDS QPKAVHCVLS LEMSGPDTLA GSPQILPVEE QQGAVQPSPQ 101 150 ENSP00000399938/1-715 MPEQKCSKLD -AAPQSLEFL RTPFGGRLLV LESFLYKQEK AVGDKVYWKC ENSBTAP00000008039/1-672 TQALK----- -PITQPLEFL RTPFGGRLLV LESFLYKQEK AVGDKVYWKC ENSTTRP00000015741/1-716 AQELKHSKPD TAAPQPLEFL RTPFGGRLLV LESFLYKQEK AVGDKVYWKC bmy_02740T0/1-680 AQELKHSKPD TAAPQPLEFL RTPFGGRLLV LESFLYKQEK AVGDKAYWKC BACU009188/1-720 AQELKHSKPD TAAPQPLEFL RTPFGGRLLV LESFLYKQEK AVGDKVYWKC 151 200 ENSP00000399938/1-715 RQHAELGCRG RAITRGLRAT VMRGHCHAPD EQGLEARRQR EKLPSLALPE ENSBTAP00000008039/1-672 REHTELGCRG RAITRGPRAT IMRGHCHPPD EEGLAARRQR QKRLGPALPE ENSTTRP00000015741/1-716 REHTELGCRG RAITRGLRAT VMRGHCHPPD EEGLEARRQR QKLPSPALPE bmy_02740T0/1-680 REHTELGCRG RAITRGLRAT VMRGHCHPPD EEGLEARRQR QKLPSPALPE BACU009188/1-720 REHTELGCRG RAITRGLRAT VMRGHCHPPD EEGLEARRQR QKLPSPALPE 201 250 ENSP00000399938/1-715 GLGEPQGPEG PGGRVEEPLE GVGPWQCPEE PEPTPGLVLS KPALEEEEAP ENSBTAP00000008039/1-672 GLA---GSQG PSSLVEEPLE GAGPWLCPVE PDPTPGPMLS YLVPEEDEGL ENSTTRP00000015741/1-716 GLG---DPQG PGGRVEEPLE GVGPWLCPEE PEPAPGPVLS KPAPEEDEGL bmy_02740T0/1-680 GLG---DPQS PGGRVEEPLE GVGPWLCPEE PEPAPGPVLS KPAPEEDEGL BACU009188/1-720 GLG---DPQG PGGRVEEPLE GVGPWLCPEE PEPAPGPVLS KPAPEEDEGL 251 300 ENSP00000399938/1-715 RALSLLSLPP KKRSILGLGQ ARPLEFLRTC YGGSFLVHES FLYKREKAVG ENSBTAP00000008039/1-672 RALALLRLPP KKRSTLGSRG PPPLEFLRTC YGGSFLVHQS FLYKREKAVG ENSTTRP00000015741/1-716 RALSLLSLPP KKRPTLGTGG PPPLEFLRTC YGGSFLVHES FLYKREKAVG bmy_02740T0/1-680 RALSLLSLPP KKRPTLGTGG PPPLEFLRTC YGGSFLVHES FLYKREKAVG BACU009188/1-720 RTLSLLSLPP KKRPTLGTGG PPPLEFLRTC YGGSFLVHES FLYKREKAVG 301 350 ENSP00000399938/1-715 DKVYWTCRDH ALHGCRSRAI TQGQRVTVMR GHCHQPDMEG LEARRQQEKA ENSBTAP00000008039/1-672 DKVYWTCRDH TQHGCRSRAI TQGRRVTVMR GHCHAPDLEG LKARRQQERA ENSTTRP00000015741/1-716 DKVYWTCRDH TLHGCRSRAI TQGQRVTVMR GHCHPPDVEG LEARRQQEKA bmy_02740T0/1-680 DKVYWTCRDH ALHGCRSRAI TQGQRVTVMR GHCHPPDVEG LEARRQQEKA BACU009188/1-720 DKVYWTCRDH ALHGCRSRAI TQGQRVTVMR GHCHPPDVEG LEARRQQEKA 351 400 ENSP00000399938/1-715 VETLQAGQDG PGSQVDTLLR GVDSLLYRRG PGPLTLTRPR PRKRAKVEDQ ENSBTAP00000008039/1-672 MAALRAQPGG PGGPEDKPLQ GVDSLLYRRG PGPLTLTRPR PRKRLMANDE ENSTTRP00000015741/1-716 MELLRARPGG LGGQVDKLLQ GVDSLFYRRG PGPLTLTRPR PRKRSKAKDQ bmy_02740T0/1-680 VESLRARPGG PGGQADKLLQ GVDSLFYRRG PGPLTLTRPR PRKRSKAKDQ BACU009188/1-720 VESLRARPGG PGGQADKLLQ GVDSLFYRRG PGPLTLTRPR PRKRSKAKDQ 401 450 ENSP00000399938/1-715 ELPTQPEAPD EHQDMDADPG GPEFLKTPLG GSFLVYESFL YRREKAAGEK ENSBTAP00000008039/1-672 ELPAEPQGEE ---DKDEDPG GPEFLRTPLG GSFLVYESFL YRREKAAGEK ENSTTRP00000015741/1-716 DLLAQPK-EE ---DQDEDLG GPEFLRTPLG GSFLVYESFL YRREKAAGEK bmy_02740T0/1-680 DLLAQPQGEE ---DQDEDLG GPEFLRTPLG GSFLVYESFL YRREKAAGEK BACU009188/1-720 DLLAQPQGEE ---DQDEDLG GPEFLRTPLG GSFLVYESFL YRREKAAGEK 451 500 ENSP00000399938/1-715 VYWTCRDQAR MGCRSRAITQ GRRVTVMRGH CHPPDLGGLE ALRQREKRPN ENSBTAP00000008039/1-672 VYWTCRDQAR MGCRSRAITQ GRRVTVMRGH CHPPDLGGLE ALRQREKRPG ENSTTRP00000015741/1-716 VYWTCRDQAR MGCRSRAITQ GKRVTVMRGH CHPPDLGGLE ALRQREKRPG bmy_02740T0/1-680 VYWTCRDQAR MGCRSRAITQ GKRVTVMRGH CHPPDLGGLE ALRQREKRPG BACU009188/1-720 VYWTCRDQAR MGCRSRAITQ GKRVTVMRGH CHPPDLGGLE ALRQREKRPG 501 550 ENSP00000399938/1-715 TAQRGSPGGP EFLKTPLGGS FLVYESFLYR REKAAGEKVY WTCRDQARMG ENSBTAP00000008039/1-672 TAQRGSTGGP EFLRTPLGGS FLVYESFLYR REKAAGEKVY WTCRDQARMG ENSTTRP00000015741/1-716 TAQRGSSGGP EFLRTPLGGS FLVYESFLYR REKAAGEKVY WTCRDQARMR bmy_02740T0/1-680 TAQRGSSGGP EFLRTPLGGS FLVYESFLYR REKAAGEKVY WTCRDQARMG BACU009188/1-720 TAQRGSSGGP EFLRTPLGGS FLVYESFLYR REKAAGEKVY WTCRDQARMG 551 600 ENSP00000399938/1-715 CRSRAITQGR RVMVMRRHCH PPDLGGLEAL RQREHFPNLA QWDSPDPLRP ENSBTAP00000008039/1-672 CRSRAITQGP RVMVMRRHCH PPDLGGLEAL RQREQLPSPA QREGSETPQP ENSTTRP00000015741/1-716 CRSRAITQGQ RVMVMRRHCH PPDLGGLEAL RQREQLPSPA QREGSETLQP bmy_02740T0/1-680 CRSRAITQGQ RVMVMRRHCH PPDLGGLEAL RQREQLPSPA QREGSETLQP BACU009188/1-720 CRSRAITQGQ RVMVMRRHCH PPDLGGLEAL RQREQLPSPA QREGSETLQP 601 650 ENSP00000399938/1-715 LEFLRTSLGG RFLVHESFLY RKEKAAGEKV YWMCRDQARL GCRSRAITQG ENSBTAP00000008039/1-672 LEFLRTSLGG RFLVYESFLY RKEKAAGEKV YWMCRDQARK GCRSRAITQG ENSTTRP00000015741/1-716 LEFLRTSLGG RFLVYESFLY RKEKAAGEKV YWMCRDQARL GCRSRAITQG bmy_02740T0/1-680 LEFLRTSLGG RFLVYESFLY RKEKAAGEKV YWMCRDQARM GCRSRAITQG BACU009188/1-720 LEFLRTSLGG RFLVYESFLY RKEKAAGEKV YWMCRDQARM GCRSRAITQG 651 700 ENSP00000399938/1-715 HRIMVMRSHC HQPDLAGLEA LRQRERLPTT AQQEDPEKI- ---QVQLCFK ENSBTAP00000008039/1-672 PRVTVMRGHC HPPDLAGLEA LRRREQLPSL AQQE------ ---------- ENSTTRP00000015741/1-716 QRVTVMRSHC HLPDLAGLEA LRQRERLPST AQQEDPEKTK LLPEVQLCFE bmy_02740T0/1-680 QRVTVMRSHC HLPDLAGLEA LRQRERLPST AQQEDP---- ---------- BACU009188/1-720 QRVTVMRSHC PRPDLAGLEA LRQRERLPST AQQEDPAST- -----AFTFP 701 750 ENSP00000399938/1-715 TCSPESQQIY GDIKDVRLDG ESQ------- -- ENSBTAP00000008039/1-672 ---------- ---------- ---------- -- ENSTTRP00000015741/1-716 TCAPESQQSY GKVEDTHLDS ESQ------- -- bmy_02740T0/1-680 ---------- ---------- ---------- -- BACU009188/1-720 QEASQEERFD GVSLPTKKSP RSWWPAAVYD VE