KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:54 2014 Check: 00 .. Name: ENSTTRP00000009360/1-611 Len: 712 Check: 4278 Weight: 1.00 Name: BACU016631/1-704 Len: 712 Check: 8815 Weight: 1.00 Name: ENSBTAP00000008054/1-612 Len: 712 Check: 4493 Weight: 1.00 Name: bmy_02659T0/1-427 Len: 712 Check: 5915 Weight: 1.00 Name: ENSP00000376127/1-613 Len: 712 Check: 7545 Weight: 1.00 // 1 50 ENSTTRP00000009360/1-611 MAAQAAAAAA QAAAAQAAQA EAAESWYLAL LGFAEHFRTS SPPKIRLCVH BACU016631/1-704 MAAQAAAA-A QAAAAQAAQA EAAESWYLAL LGFAEHFRTS SPPKIRLCVH ENSBTAP00000008054/1-612 MAAQAAAA-A QAAAAQAAQA EAAESWYLAL LGFAEHFRTS SPPKIRLCVH bmy_02659T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000376127/1-613 MAAQAAAA-A QAAAAQAAQA EAADSWYLAL LGFAEHFRTS SPPKIRLCVH 51 100 ENSTTRP00000009360/1-611 CLQAVFPFKP PQRIEARTHL QLGSVLYHHT KNSEQARSHL EKA------- BACU016631/1-704 CLQAVFPFKP PQRIEARTHL QLGSVLYHHT KNSEQARSHL EKAQDPEDVS ENSBTAP00000008054/1-612 CLQAVFPFKP PQRIEARTHL QLGSVLYHHT KNSEQARSHL EKA------- bmy_02659T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000376127/1-613 CLQAVFPFKP PQRIEARTHL QLGSVLYHHT KNSEQARSHL EKA------- 101 150 ENSTTRP00000009360/1-611 ---------- ---------- ---------- ---------- ---------- BACU016631/1-704 LSGPEGTRPV PYLMFLVTGR GLGLRSGYSE SCLFQEQQGL QILQVCSKMS ENSBTAP00000008054/1-612 ---------- ---------- ---------- ---------- ---------- bmy_02659T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000376127/1-613 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000009360/1-611 -WLISQQIPQ FEDVKFEAAS LL-------- ---SELYCQE NSVDAAKPLL BACU016631/1-704 PFGISGDAPR SASMATHTYI LILQGPAPDT PTPTTSLHMH NSVDAAKPLL ENSBTAP00000008054/1-612 -WLISQQITQ FEDVKFEAAS LL-------- ---SELYCQE NSVDAAKPLL bmy_02659T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000376127/1-613 -WLISQQIPQ FEDVKFEAAS LL-------- ---SELYCQE NSVDAAKPLL 201 250 ENSTTRP00000009360/1-611 RKAIQISQQT PYWHCRLLFQ LAQLHTLEKD LVSACDLLGV GAEYARVVGS BACU016631/1-704 RKAIQISQQT PYWHCRLLFQ LAQLHTLEKD LVSACDLLGV GAEYARVVGS ENSBTAP00000008054/1-612 RKAIQISQQT PYWHCRLLFQ LAQLHTLEKD LVSACDLLGV GAEYARVVGS bmy_02659T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000376127/1-613 RKAIQISQQT PYWHCRLLFQ LAQLHTLEKD LVSACDLLGV GAEYARVVGS 251 300 ENSTTRP00000009360/1-611 EYTRALFLLS KGM------- ---------- ------LLLM ERKLQEVHPL BACU016631/1-704 EYTRALFLLS KGMAPRPSRM AGSHEGQARV PQLDSELLLM ERKLQEVHPL ENSBTAP00000008054/1-612 EYTRALFLLS KGM------- ---------- ------LLLM ERKLQEVHPL bmy_02659T0/1-427 ---------- --M------- ---------- ------LLLM ERKLQEVHPL ENSP00000376127/1-613 EYTRALFLLS KGM------- ---------- ------LLLM ERKLQEVHPL 301 350 ENSTTRP00000009360/1-611 LTLCGQIVEN WQGNPIQKES LRVFFLVLQV THYLDAGQVK SVKPCLKQLQ BACU016631/1-704 LTLCGQIVEN CQGNPIQKES LRVFFLVLQV THYLDAGQVK SVKPCLKQLQ ENSBTAP00000008054/1-612 LTLCGQIVEN WQGNPIQKES LRVFFLVLQV THYLDAGQVK SVKPCLKQLQ bmy_02659T0/1-427 LTLCGQIVEN WQGNPIQKES LRVFFLVLQV THYLDAGQVK SVKPCLKQLQ ENSP00000376127/1-613 LTLCGQIVEN WQGNPIQKES LRVFFLVLQV THYLDAGQVK SVKPCLKQLQ 351 400 ENSTTRP00000009360/1-611 QCIQTISTLH DDEILPSNPA DLFHWLPKEH MCVLVYLVTV MHSMQAGYLE BACU016631/1-704 QCIQTISTLH DDEILPSNPA DLFHWLPKEH MCVLVYLVTV MHSMQAGYLE ENSBTAP00000008054/1-612 QCIQTISTLH DDEILPSNPA DLFHWLPKEH MCVLVYLVTV MHSMQAGYLE bmy_02659T0/1-427 QCIQTISTLH DDEILPSNPA DLFHWLPKEH MCVLVYLVTV MHSMQAGYLE ENSP00000376127/1-613 QCIQTISTLH DDEILPSNPA DLFHWLPKEH MCVLVYLVTV MHSMQAGYLE 401 450 ENSTTRP00000009360/1-611 KAQKYTDKAL MQLEKLKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016631/1-704 KAQKYTDKAL MQLEKLKMLD CSPILSSFQV ILLEHIIMCR LVTGHKATAL ENSBTAP00000008054/1-612 KAQKYTDKAL MQLEKLKMLD CSPILSSFQV ILLEHIIMCR LVTGHKATAL bmy_02659T0/1-427 KAQKYTDKAL MQLEKLKMLD CSPILSSFQV ILLEHIIMCR LVTGHKATAL ENSP00000376127/1-613 KAQKYTDKAL MQLEKLKMLD CSPILSSFQV ILLEHIIMCR LVTGHKATAL 451 500 ENSTTRP00000009360/1-611 XXISQVCQLC QQSPRLFSNH AAQLHTLLGL YCVSVNCMDN AEAQFTTALR BACU016631/1-704 QEISQVCQLC QQSPRLFSNH AAQLHTLLGL YCVSVNCMDN AEAQFTTALR ENSBTAP00000008054/1-612 QEISQVCQLC QQSPRLFSNH AAQLHTLLGL YCVSVNCMDN AEAQFTTALR bmy_02659T0/1-427 QEISQVCQLC QQSPRLFSNH AAQLHTLLGL YCVSVNCMDN AEAQFTTALR ENSP00000376127/1-613 QEISQVCQLC QQSPRLFSNH AAQLHTLLGL YCVSVNCMDN AEAQFTTALR 501 550 ENSTTRP00000009360/1-611 LTNHQELWAF IVTNLASVYI REGNRHQEV- -----LYSLL ERINPDHSFP BACU016631/1-704 LTNHQELWAF IVTNLASVYI REGNRHQE-- -----LYSLL ERINPDHSFP ENSBTAP00000008054/1-612 LTNHQELWAF IVTNLASVYI REGNRHQE-- -----LYSLL ERINPDHSFP bmy_02659T0/1-427 LTNHQELWAF IVTNLASVYI REGNRHQEVV GDMLHLYSLL ERINPDHSFP ENSP00000376127/1-613 LTNHQELWAF IVTNLASVYI REGNRHQEV- -----LYSLL ERINPDHSFP 551 600 ENSTTRP00000009360/1-611 VSSHCLRAAA FYVRGLFSFF QGRYNEAKRF LRETLKMSNA EDLNRLTACS BACU016631/1-704 VSSHCLRAAA FYVRGLFSFF QGRYNEAKRF LRETLKMSNA EDLNRLTACS ENSBTAP00000008054/1-612 VSSHCLRAAA FYVRGLFSFF QGRYNEAKRF LRETLKMSNA EDLNRLTACS bmy_02659T0/1-427 VSSHCLRAAA FYVRGLFSFF QGRYNEAKRF LRETLKMSNA EDLNRLTACS ENSP00000376127/1-613 VSSHCLRAAA FYVRGLFSFF QGRYNEAKRF LRETLKMSNA EDLNRLTACS 601 650 ENSTTRP00000009360/1-611 LVLLGHIFYV LGNHRESNNM VVPAMQLASK IPDMSVQLWS SALLRDLNKA BACU016631/1-704 LVLLGHIFYV LGNHRESNNM VVPAMQLASK IPDMSVQLWS SALLRDLNKA ENSBTAP00000008054/1-612 LVLLGHIFYV LGNHRESNNM VVPAMQLASK IPDMSVQLWS SALLRDLNKA bmy_02659T0/1-427 LVLLGHIFYV LGNHRESNNM VVPAMQLASK IPDMSVQLWS SALLRDLNKA ENSP00000376127/1-613 LVLLGHIFYV LGNHRESNNM VVPAMQLASK IPDMSVQLWS SALLRDLNKA 651 700 ENSTTRP00000009360/1-611 CGNAMDAHEA AQMHQNFSQQ LLQDHIEACS LPEHNLITVT DD--SVQLQA BACU016631/1-704 CGNAMDAHEA AQMHQNFSQQ LLQDHIEACS LPEHNLITWT DGPPPVQFQA ENSBTAP00000008054/1-612 CGNAMDAHEA AQMHQNFSQQ LLQDHIEACS LPEHNLITWT DGPPPVQFQA bmy_02659T0/1-427 CGNAMDAHEA AQMHQNFSQQ LLQDHIEACS LPEHNLITWT DGPPPVQFQA ENSP00000376127/1-613 CGNAMDAHEA AQMHQNFSQQ LLQDHIEACS LPEHNLITWT DGPPPVQFQA 701 750 ENSTTRP00000009360/1-611 QNG-NTSLDQ LL BACU016631/1-704 QNGPNTSLAS LL ENSBTAP00000008054/1-612 QNGPNTSLAS LL bmy_02659T0/1-427 QNGPNTSLAS LL ENSP00000376127/1-613 QNGPNTSLAS LL