KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:14 2014 Check: 00 .. Name: ENSP00000262585/1-1198 Len: 1308 Check: 1375 Weight: 1.00 Name: ENSTTRP00000007126/1-1194 Len: 1308 Check: 3314 Weight: 1.00 Name: ENSBTAP00000008069/1-1203 Len: 1308 Check: 7757 Weight: 1.00 Name: bmy_21547T0/1-1148 Len: 1308 Check: 3444 Weight: 1.00 Name: BACU001513/1-781 Len: 1308 Check: 672 Weight: 1.00 // 1 50 ENSP00000262585/1-1198 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007126/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000008069/1-1203 ---------- ---------- ---------- ---------- ---------- bmy_21547T0/1-1148 MAEAAPQYLA LPSGLLELCA LLGAPRDSLR GPEQVAQKKG VKSLSSLDPE BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000262585/1-1198 ---------- ---------- ---------M RSLRKKREKP RPEQWKGLPG ENSTTRP00000007126/1-1194 ---------- ---------- ---------R RSFRKKRERP KAEPSKGHPG ENSBTAP00000008069/1-1203 ---------- ---------- ---------K RSFRKKRERP RVELGKGVPG bmy_21547T0/1-1148 VLSVFVPPFV TKEDSQXAGV SCVTLGKSKR RSFRKKRERP KAEPSKGHPG BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000262585/1-1198 PPRAPEPEDV AVPGGVDLLT LPQLCFPGGV CVATEPKEDC VHFLVLTDVC ENSTTRP00000007126/1-1194 GPRGQDPEDV GIPNGVDLLA LPQLCFPXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008069/1-1203 GPRGPDPEDV NIPNGVDLLA LPQLCFPGGL CVASEPREDC VHFLVLTDIC bmy_21547T0/1-1148 GPRGQDPEDV GIPNGVDLLA LPQLCFPGGV CVASEPKEDC VHFLVLTDVC BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000262585/1-1198 GNRTYGVVAQ YYRPLHDEYC FYNGKTHRE- ------CPGC FVPFAVCVVS ENSTTRP00000007126/1-1194 XXXXXXXXXX XXXXXXDEYC FYNGKMRWE- ------RPGC FVPFAVCVVS ENSBTAP00000008069/1-1203 GNRTYGVVAQ YYRPLHDEYC FYNGRTHWEA LGPGGSAAGC FVPFAVCVVS bmy_21547T0/1-1148 GNRTYGVVAQ YYRPLHDEYC FYNGKMRWEA SGLGRSAAGC FVPFAVCVVS BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000262585/1-1198 RFPYYNSLKD CLSCLLALLK PCKDFEVDSH IKDFAAKLSL IPSPPPGPLH ENSTTRP00000007126/1-1194 RFPYYNALKD CLSCLLTHLK ICKDFEVDNH IKDFAAKLSL IPSPPPGPLH ENSBTAP00000008069/1-1203 RFPYYNALKD CLSCLLTHLK FCKDFEVDNH IKDFAAKLSL IPSPPPGPLH bmy_21547T0/1-1148 RFPYYNALKD CLSCLLTHLK ICKDFEVDNH IKDFAAKLSL IPSPPPGPLH BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000262585/1-1198 LVFNMKSLQI VLPARADPES PILDLDLHLP LLCFRPEKVL QILTCILTEQ ENSTTRP00000007126/1-1194 LVLNMKPLQI VFPSRADPES PLIDLDLHLP LLCFRPEKVL QXXXXXXXXX ENSBTAP00000008069/1-1203 LIFNMKPLQI VFPSRADPES PLIDLDLHLP LLCFRPEKVL QILSCLLTEQ bmy_21547T0/1-1148 LILNMKPLQI VFPSRADPES PLIDLDLHLP LLRFRPEKVL QILTCLLTEQ BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000262585/1-1198 RIVFFSSDWA LLTLVTECFM AYLYPLQWQH PFVPILSDQM LDFVMAPTSF ENSTTRP00000007126/1-1194 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVMAPTSF ENSBTAP00000008069/1-1203 RVVFFSSSWA LLTLVAECFM AYLHPLQWQH TFVPILSGQM LDFLMAPTSF bmy_21547T0/1-1148 HVVFFSSSWA LLTLVAECFM AYLHPLQWQH TFVPILSRHM LDFVMAPTSF BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000262585/1-1198 LMGCHLDHFE EVSKEADGLV LINIDHGSIT YSKSTDDNVD IPDVPLLAAQ ENSTTRP00000007126/1-1194 -MGC-VDHFE EVSKEADGLI LINIDTGSIT FSN--DEDVD VPDIPLLAAQ ENSBTAP00000008069/1-1203 LMGCHLDHFE EVSKEADGLI LINIDSGNIT YSN--DEEVD VPDIPLLAAQ bmy_21547T0/1-1148 LMGCHLDHFE EVSKEADGLI LINIDAGSIT YSN--DEDMD VPDIPLLAAQ BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000262585/1-1198 TFIQRVQSLQ LHHELHAAHL LSSTDLKEGR AHRRSWQQKL NCQIQQTTLQ ENSTTRP00000007126/1-1194 TFIQRVQSLQ MHRELDLAHL CASTDLNEGR ACQRAWQQRL NCQIQQITLQ ENSBTAP00000008069/1-1203 TFIQRVQSLQ LHHELDLAHL CASTDVNEGR ASRRAWQQQL NCQIQQMTLQ bmy_21547T0/1-1148 TFIQRVQGLH MHHDLDLAHL CASTDLNEGR ACRRAWQQRL NCQIQQITLQ BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000262585/1-1198 LLVSIFRDVK NHLNYEHRVF NSEEFLKTRA PGDHQFYKQV LDTYMFHSFL ENSTTRP00000007126/1-1194 LLVCIFRGVK NHLNYEHRVF NSEEFLKTRA PGDQQFYKQV LDTYMFHAFL ENSBTAP00000008069/1-1203 LLVSIFREVK NHLNYEHRVF NSEEFLKTRA LGDQQFYKQV LDTYMFHAFL bmy_21547T0/1-1148 LLVCIFREVK NHLNYEHRVF NSEEFLKTRA PGDQQFYKQV LDTYMFHAFL BACU001513/1-781 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000262585/1-1198 KARLNRRMDA FAQMDLDTQS EEDRINGMLL SPRRPTVEKR ASRKSSHLHV ENSTTRP00000007126/1-1194 KARLSRRMDA FAQMDLCTQS EEDRIDGMLL SPRRPTVEKM ASRKPSAPHG ENSBTAP00000008069/1-1203 KARLSRRMDA FAQMDLHTQS EEDRINGMLL SPRRPTIEKM ASRKSSVSHT bmy_21547T0/1-1148 KARLSRRMDA FAQMDLHTQS EEDRIDGMLL SPRRPTIEKM ASRKSSAPHG BACU001513/1-781 ---------- ---------- -------MLL SPRRPTIEKM ASRKSSAPHG 551 600 ENSP00000262585/1-1198 THRRMVVSMP NLQDIAMPEL APRNSSLRLT DTAGCRGSSA VLNVTPKSPY ENSTTRP00000007126/1-1194 AHRRMVVSMP NLQDIAVPEL PPRNSSLRKM RTEDCGGSHT VLDVPPKLTY ENSBTAP00000008069/1-1203 AHRRMVVSMP NLQDITVPEL PPRNSSLRKI QTTEYGSSHT VLDVPPKSTH bmy_21547T0/1-1148 AHRRMVVSMP NLQDIMVPEL PPRNSSLRKI HTEDCGSSRT VLDMPSKLTY BACU001513/1-781 AHRRMVVSMP NLQDIVVPEL PPRNSSLRKI HTEDCGSSRT VLDVPSKLTY 601 650 ENSP00000262585/1-1198 TFKIPEIHFP LESKCVQAYH AHFVSMLSEA MCFLAPDNSL LLARYLYLRG ENSTTRP00000007126/1-1194 TFKIPEIHFP LVGQCVQAFH ADCVAQLSKA MDSLAPENSV LLARYFYLRG ENSBTAP00000008069/1-1203 TFKIPEIHFP LVAQCVQAFY ADCVAQLSKA MGSLAPENSV LLARYFYLRG bmy_21547T0/1-1148 TFKIPEIHFP LVGQCVQAFH ADCVAQLSKA MDSLAPENSV LLARYFYLRG BACU001513/1-781 TFKIPEIHFP LVGQCVQAFH ADCVAQLSKA MDSLAPENSV LLARYFYLRG 651 700 ENSP00000262585/1-1198 LVYLMQGQLL NALLDFQNLY KTDIRIFPTD LVKRTVESMS APEWEGAEQA ENSTTRP00000007126/1-1194 LVQLMQGQLL GALLDFQSLY KTDVRIFPAD LVQRTVKSLS APERAQAERT ENSBTAP00000008069/1-1203 LVQLMQGQLL DALLDFQSLY KTDVRVFPTD LVQTTVESLS APERTQAERM bmy_21547T0/1-1148 LVQLMQGQLL GALLDFQSLY KTDVRIFPAD LVQRTVESLS APERAQAERT BACU001513/1-781 LVQLMQGQLL GALLDFQSLY KTDVRIFPAD LVQRTVESLS APERAQAERT 701 750 ENSP00000262585/1-1198 PELMRLISEI LDKPHEASKL DDHVKKFKLP KKHMQLGDFM KRVQESGIVK ENSTTRP00000007126/1-1194 PELRRLISEV VDKPEDAPKA DDRVKNFELP KKHMQLDDFV KRVQESGIVK ENSBTAP00000008069/1-1203 PELRRLISEV MDRPADVPKA DDRVKNFELP KKHMQLDDFV KRVQESGIVK bmy_21547T0/1-1148 PELRRLISEV MDKPEDAPKA DDRVKNFELP KKHMQLDDFV KRVQESGIVK BACU001513/1-781 PELRRLISEV MDKPEDAPKA DDRVKNFELP KKHMQLDDFV KRVQESGIVK 751 800 ENSP00000262585/1-1198 DASIIHRLFE ALTV------ ---------- --------GQ EKQIDPETFK ENSTTRP00000007126/1-1194 DAGIIHRLFE ALTV------ ---------- --------GH QKQIDPETFK ENSBTAP00000008069/1-1203 DTVIIHRLFE ALTV------ ---------- --------GH EKQIDPETFK bmy_21547T0/1-1148 DAGIIHRLFE ALT------- ---------- ---------- ---------- BACU001513/1-781 DAGIIHRLFE ALTVGRISFR VLCGSPCALW KGRALLVTGH QKQIDPETFK 801 850 ENSP00000262585/1-1198 DFYNCWKETE AEAQEVSLPW LVMEHLDKNE CVCKLSSSVK TNLGVGKIAM ENSTTRP00000007126/1-1194 DFYNCWKEAE AEAQGVNLPF SVTEQLDKNE CVYKLSSSVK TNRGVGKIAM ENSBTAP00000008069/1-1203 DFYNCWKEAE AEAQEVSLPL SVMEQLDKSE CVYKLSRSVK TNRGVGKIAM bmy_21547T0/1-1148 ---------- ---------- ---------- ---------- ---------- BACU001513/1-781 DFYNCWKEAE AEAQEVNLPF SVMEQLDKNE CVYKLSSSVK TNRGVGKIAM 851 900 ENSP00000262585/1-1198 TQKRLFLLTE GRPGYLEIST FRNIEEVRRT TTTFLLRRIP TLKIRVASKK ENSTTRP00000007126/1-1194 TQKRLFLLTE GRPGYVEIST FRNIEEVRNT TVAFLLLRIP TLKIKVLSKK ENSBTAP00000008069/1-1203 TQKRLFLLTE GRPGYVEIST FRNIEDVRST MATFLLLRIP TLKIKTTSKK bmy_21547T0/1-1148 ---------- ---------- -----EVRST TVAFLLLRIP TLKIKMVSKK BACU001513/1-781 TQKRLFLLTE GRPGYVEIST FRNIEEVRST TVAFLLLRIP TLKIKMVSKK 901 950 ENSP00000262585/1-1198 EVFEANLKTE CDLWHLMVKE MWAGKKLADD HKDPHYVQQA LTNVLLMDAV ENSTTRP00000007126/1-1194 EVFEANLKTE CDLWHLMVKE MWAGKKLADD HKDPQYVQQA LTHVLLMDAV ENSBTAP00000008069/1-1203 EVFEANLKTE CDLWHLMVKE MWAGRKLADD HKDPQYVQQA LTHILLMDAV bmy_21547T0/1-1148 EVFEANLKTE CDLWHLMVKE MWAGKKLADD HKDPQYVQQA LTHVLLMDAV BACU001513/1-781 EVFEANLKTE CDLWHLMVKE MWAGKKLADD HKDPQYVQQA LTHALLMDAV 951 1000 ENSP00000262585/1-1198 VGTLQSPGAI YAASKLSYFD KMSNEMPMTL PETTLETLKH KINPSAGEAF ENSTTRP00000007126/1-1194 VGALQSPGAI YAASKLSYFD KMKNEMPMAV PKTTSETLKH KINPSAGETL ENSBTAP00000008069/1-1203 VGTLQSPGAI YAASKLSYFD RMKNEMPMAI PKTTSETLKH KINPSEGETT bmy_21547T0/1-1148 VGALQSPGAI YAASKLSYFD KMKNER---- ---------- ---------- BACU001513/1-781 VGALQSPGAI YAASKLSYFD KMKNEMPMAV PKTTSETLKH KINPSAGETF 1001 1050 ENSP00000262585/1-1198 PQAVDVLLYT PGHLDPAEKV EDAHPKLWCA LSEGKVTVFN ASSWTIHQHS ENSTTRP00000007126/1-1194 PRAIDVLLYT PGHLDPAEKV EDAHPKLWCA LNEGKVVVFD ASSWTVHQHC ENSBTAP00000008069/1-1203 PRAVDVLLYT PGHLDPAEKV EDAHPKLWCA LNEGKVIVFD ASSWTIHQHC bmy_21547T0/1-1148 ---------- --HLDPAEKV EDAHPKLWCA LNEGKVVVFD ASSWTVHQHC BACU001513/1-781 PRAIDVLLYT PGHLDPAEKV EDAHPKLWCA LNEGKVVVFD ASSWTVHQHC 1051 1100 ENSP00000262585/1-1198 FKVGTAKVNC MVMADQNQVW VGSEDSVIYI INVHSMSCNK QLTAHCSSVT ENSTTRP00000007126/1-1194 FKVGTSKLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008069/1-1203 FRVGTSKLNC MVMAEQSQVW VGSEDSVIYI INVHSMSCNK QLTDHRSSVT bmy_21547T0/1-1148 FKVGTSKL-- --------VW VGSEDSVIYI INVHSMSCNK QLTDHRSSVT BACU001513/1-781 FKVGTSKLNC MVMAEQSQVW VGSEDSVIYI INVHSMSCNK QLTDHRSSVT 1101 1150 ENSP00000262585/1-1198 DLIVQDGQEA PSNVYSCSMD GMVLVWNVST LQVTSRFQLP RGGLTSIRLH ENSTTRP00000007126/1-1194 XXXXXXXXXX XXTVYSCSVD GTVLAWNASS LQVTSRFQLP GDGLLAIRLH ENSBTAP00000008069/1-1203 GLAVQDGEQA PSTVYSCSAD GTVLAWNASS LRVTGRFQVP GGGLSAIRLH bmy_21547T0/1-1148 GLVVQDRTQA PSTVYSCSAD GTVLAWNASS LRVTSRFQLP GDGLSAIRLH BACU001513/1-781 GLVVQDRAQA PSTVYSCSAD GTVLAWNASS LRVTSRFQLP GDGLSAIRLH 1151 1200 ENSP00000262585/1-1198 GGRLWCCTGN SIMVMKMNGS LHQELKIEEN FKDTSTSFLA FQLLPEEEQL ENSTTRP00000007126/1-1194 GGRLWCCTGN SIVVVTTAGF LHQELKIGEN FKEISTSFLG FQLMPEQEQL ENSBTAP00000008069/1-1203 GGRLWCCTGD SILMVNMNGS SCQKLKITGS FKETGTSFLG FQLMPEQEQL bmy_21547T0/1-1148 GGRLWCCTGN SIVVVTTAGF LHQELKIGEN FKEISTSFLG FQLVPEQEQL BACU001513/1-781 GGRLWCCTGN SIVVVTTAGF LHQELKIGEN FKEISTSFLG FQLVPEQEQL 1201 1250 ENSP00000262585/1-1198 WAACAGRSEV YIWSLKDLAQ PPQRVPLEDC SEINCMIRVK KQVWVGSRGL ENSTTRP00000007126/1-1194 WAACAGYDDI YVWSLQDLAQ PPQRIHLQDC SRIHCMIQVK KQIWVGGTGL ENSBTAP00000008069/1-1203 WAACAGYPDV YVWSLQDPAQ PPQRIHLQDC SEINCMIRVK KQIWVGTTGL bmy_21547T0/1-1148 WAACAGYDDI YVWSLQDLAQ PPQRIHLQDC SKINCMIRVK KQIWVGGTGL BACU001513/1-781 WAACAGYDDI YIWSLQDLAQ PPQRIHLQDC SKINCMIRVK KQIWVGGTGL 1251 1300 ENSP00000262585/1-1198 GQGTPKGKIY VIDAERKTVE KELVAHMDTV RTLCSAEDRY VLSGSGREEG ENSTTRP00000007126/1-1194 SQGRSKGKIY VIDAERKTVE KELVAHMDTV NTLCSAEDRY VLSGSGRDEG ENSBTAP00000008069/1-1203 SQGQLKGKIY VMDAERRTVE KELVAHADTV KTLCSAEDRY VLSGAGPEEG bmy_21547T0/1-1148 SQGRSKGKIY VIDAERKTVE KELVAHTDTV KTLCSAEDRY VLSGSGREEG BACU001513/1-781 SQGRSKGKIY VIDAERKTVE KELVAHTDTV KTLCSAEDRY VLSGSGREEG 1301 1350 ENSP00000262585/1-1198 KVAIWKGE ENSTTRP00000007126/1-1194 KIAIWKVE ENSBTAP00000008069/1-1203 KIAIWKVE bmy_21547T0/1-1148 KIAIWKVE BACU001513/1-781 KIAIWKVE