KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:15 2014 Check: 00 .. Name: ENSTTRP00000008290/1-751 Len: 849 Check: 5460 Weight: 1.00 Name: bmy_17146T0/1-517 Len: 849 Check: 1614 Weight: 1.00 Name: BACU007743/1-503 Len: 849 Check: 5228 Weight: 1.00 Name: ENSP00000265361/1-751 Len: 849 Check: 7356 Weight: 1.00 Name: ENSBTAP00000008076/1-751 Len: 849 Check: 7478 Weight: 1.00 // 1 50 ENSTTRP00000008290/1-751 ---------- ---------- ---------- ------MAFQ AIWVLVGV-- bmy_17146T0/1-517 MWSIQKMRVQ PFDRVLYSKS PTYEPSSFEL SKMRMCVCMS SHCALFPPKD BACU007743/1-503 ---------- ---------- ---------- ------MAFQ AIWVLVGV-- ENSP00000265361/1-751 ---------- ---------- ---------- ------MAFR TICVLVGV-- ENSBTAP00000008076/1-751 ---------- ---------- ---------- ------MAFQ AVCILVGV-- 51 100 ENSTTRP00000008290/1-751 FVCSTCVKGS ---------- SQPQARVYL- ---------- ---------- bmy_17146T0/1-517 FTCTLKIKET ALANAYLMEA TSPKAVTWLN RNWHEGSENF MGVRWDKRPH BACU007743/1-503 FVCSTCVKGS ---------- SQPQARVYL- ---------- ---------- ENSP00000265361/1-751 FICSICVKGS ---------- SQPQARVYL- ---------- ---------- ENSBTAP00000008076/1-751 FVCSTYVKGS ---------- PQPQARVYL- ---------- ---------- 101 150 ENSTTRP00000008290/1-751 TFDXXXXXXX XEYFSLSHHP LDYRILLMDE DQDRIYVGSK DHILSLNINN bmy_17146T0/1-517 SAQELRETKT SEYFSLSHHP LDYRILLMDE DQDRIYVGSK DHILSLNINN BACU007743/1-503 TFDELRETKT SEYFSLSHHP LDYRILLMDE DQDRLYVGSK DHILSLNINN ENSP00000265361/1-751 TFDELRETKT SEYFSLSHHP LDYRILLMDE DQDRIYVGSK DHILSLNINN ENSBTAP00000008076/1-751 TFDELRETKT SEYFSLSQYP LDYRILLMDE DQDRMYVGSK DHILSLNINN 151 200 ENSTTRP00000008290/1-751 ISQEPLSVFW PASAIKVEEC KMAGKDPTHG CGNFVRVIQA FNRTHLYVCG bmy_17146T0/1-517 ISQEPLSVFW PASTIKVEEC KMAGKDPT-- ---------- ---------- BACU007743/1-503 ISQEPLSVFW PASTIKVEEC KMAGKDPTHG CGNFVRVIQA FNRTHLYVCG ENSP00000265361/1-751 ISQEALSVFW PASTIKVEEC KMAGKDPTHG CGNFVRVIQT FNRTHLYVCG ENSBTAP00000008076/1-751 ISQEPLSVFW PASAIKVEEC KMAGKDPTHG CGNFVRVIQA FNRTHLYVCG 201 250 ENSTTRP00000008290/1-751 SGAFSPVCTY LNRGRRSEDQ VFMIDSKCES GKGRCSFNPN VNTVSVMINE bmy_17146T0/1-517 ---------- --------DQ VFVIDSKCES GKGRCSFNPN VNTVSVMINE BACU007743/1-503 SGAFSPVCTY LNRGRRSEDQ VFMIDSRCES GKGRCSFNPN VNTVSVMINE ENSP00000265361/1-751 SGAFSPVCTY LNRGRRSEDQ VFMIDSKCES GKGRCSFNPN VNTVSVMINE ENSBTAP00000008076/1-751 SGAFSPVCAY LNRGRRSEDQ VFMIDSKCES GKGRCSFNPN VNTVSVMINE 251 300 ENSTTRP00000008290/1-751 ELFSAMYIDF MGTDAAIFRS LTKRNAVRTD QHNSKWLSEP MFVDAHVIPD bmy_17146T0/1-517 ELFSGMYIDF MGTDAAIFRS LTKRNAVRTD QHNSKWLSEP MFVDAHVIPD BACU007743/1-503 ELFSGMYIDF MGTDAAIFRS LTKRNAVRTD QHNSKWLSEP MFVDAHVIPD ENSP00000265361/1-751 ELFSGMYIDF MGTDAAIFRS LTKRNAVRTD QHNSKWLSEP MFVDAHVIPD ENSBTAP00000008076/1-751 ELFSGMYIDF MGTDAAIFRS LTKRNAVRTD QHNSKWLSEP MFVDAHVIPD 301 350 ENSTTRP00000008290/1-751 GTDPNDAKVY FFFKEKLTDN SRSTKQIHSM IARICP---- ---------- bmy_17146T0/1-517 GTDPNDAKVY FFFKEKLTDN SRSTKQIHSM VARICPSIFK HYNIPLILEL BACU007743/1-503 GTDPNDAKVY FFFKEKLTDN SRSTKQIHSM IARICP---- ---------- ENSP00000265361/1-751 GTDPNDAKVY FFFKEKLTDN NRSTKQIHSM IARICP---- ---------- ENSBTAP00000008076/1-751 GTDPNDAKVY FFFKEKLTDN SRSTKQIHSM IARICP---- ---------- 351 400 ENSTTRP00000008290/1-751 ---------- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- bmy_17146T0/1-517 ICFSVIWNKA NDTGGLRSLV NKWTTFLKAR LVCSVTDEDG PETHFDELER BACU007743/1-503 ---------- NDTGGLRSLV NKWTTFLKAR LVCSVTDEDG PETHFDEL-- ENSP00000265361/1-751 ---------- NDTGGLRSLV NKWTTFLKAR LVCSVTDEDG PETHFDEL-- ENSBTAP00000008076/1-751 ---------- NDTGGLRSLV NKWTTFLKAR LVCSVTDEDG PETHFDEL-- 401 450 ENSTTRP00000008290/1-751 ---XDVFLLE TDNPRTTLVY GIFTTSXXXX XXXXXXXXXX XXXXXXXXXX bmy_17146T0/1-517 EEREDVFLLE TDNPRTTLVY GIFTTSSSVF KGSAVCVYHL SDIQTVFNGP BACU007743/1-503 ---EDVFLLE TDNPRTTLVY GIFTTSSSVF KGSAVCVYHL SDIQTVFNGP ENSP00000265361/1-751 ---EDVFLLE TDNPRTTLVY GIFTTSSSVF KGSAVCVYHL SDIQTVFNGP ENSBTAP00000008076/1-751 ---EDVFLLE MDNPRTTLVY GIFTTSSSVF KGSAVCVYHF SDIQTVFNGP 451 500 ENSTTRP00000008290/1-751 XXXXXXXXXX XXXXXXXXXX XXXXXCPGGA FTPNMRTTKE FPDDVVTFIR bmy_17146T0/1-517 FAHKEGPNHQ LISYQGRIPY PRPGTCPGGA FTPNMRTTKD FPDDVVTFIR BACU007743/1-503 FAHKEGPNHQ LISYQGRIPY PRPGTCPGGA FTPNMRTTKE FPDDVVTFIR ENSP00000265361/1-751 FAHKEGPNHQ LISYQGRIPY PRPGTCPGGA FTPNMRTTKE FPDDVVTFIR ENSBTAP00000008076/1-751 FAHKEGPNHQ LISYQGRIPY PRPGTCPGGA FTPNMRTTKE FPDDVVTFIR 501 550 ENSTTRP00000008290/1-751 NHPLMYNSIY PIHRRPLIVR TGTDYKYTKI AVDRVNAADG RYHVLFLGTD bmy_17146T0/1-517 NHPLMYNSIY PVHRRPLIVR TGTDYKYTKI AVDRVNAADG R--------- BACU007743/1-503 NHPLMYNSIY PIHRRPLIVR TGTDYKYTKI AVDRVNAADG RYHVLFLGTD ENSP00000265361/1-751 NHPLMYNSIY PIHKRPLIVR IGTDYKYTKI AVDRVNAADG RYHVLFLGTD ENSBTAP00000008076/1-751 NHPLMYNSIY PVHRRPLIVR IGTDYKYTKI AVDRVNAADG TYNVLFLGTD 551 600 ENSTTRP00000008290/1-751 RGTVQKVVVL PSNSSASGEL ILEELEVFKN RAPVTTMKIS SKKQQLYVSS bmy_17146T0/1-517 ---------- ---------- ---------- ---------- ---------- BACU007743/1-503 RGTVQKVVVL PSNSSASGEL ILEELKVFKE S--------- ---------- ENSP00000265361/1-751 RGTVQKVVVL PTNNSVSGEL ILEELEVFKN HAPITTMKIS SKKQQLYVSS ENSBTAP00000008076/1-751 RGTVQKVVVL PTNSSARSEL ILEELEVFKN HAPITTMKIS SKKQQLYVSS 601 650 ENSTTRP00000008290/1-751 NEGLSQVSLH RCHIYGTACA DCCLARDPYC AWDGHACSRF YPTGKRRSRR bmy_17146T0/1-517 ---------- ---------- ---------- ---------- ---------- BACU007743/1-503 ---------- ---------- ---------C SYN------- ---------- ENSP00000265361/1-751 NEGVSQVSLH RCHIYGTACA DCCLARDPYC AWDGHSCSRF YPTGKRRSRR ENSBTAP00000008076/1-751 NEGLAQVSLH RCHIYGSACA DCCLARDPYC AWDGHSCSRF YPTGKRRSRR 651 700 ENSTTRP00000008290/1-751 QDVRHGNPLT QCRGFNLKAY RNAAEIVQYG VKNNTTFLEC VPKSPQASIK bmy_17146T0/1-517 ---------- ---------- ---------S IKQQASVLI- ---------- BACU007743/1-503 ---------- ---------- ---------- --NNENFIQ- ---------- ENSP00000265361/1-751 QDVRHGNPLT QCRGFNLKAY RNAAEIVQYG VKNNTTFLEC APKSPQASIK ENSBTAP00000008076/1-751 QDVRHGNPLT QCRGFNLKAY RNAAEIVQYG VKNNTTFLEC APKSPQASIK 701 750 ENSTTRP00000008290/1-751 WLLQKDEDRR KEVKLNERII ATSQGLLIRS VQNSDQGLYH CIATENSFKQ bmy_17146T0/1-517 ---------- ---------- ---------- ------GL-- ---------- BACU007743/1-503 ---------- ---------- ---------- ---------- --------KA ENSP00000265361/1-751 WLLQKDKDRR KEVKLNERII ATSQGLLIRS VQGSDQGLYH CIATENSFKQ ENSBTAP00000008076/1-751 WLLQKDKDRR KEVKLNERII ATSQGLLIRS VQDSDQGLYH CIATENSFKQ 751 800 ENSTTRP00000008290/1-751 TIAKINFKVL DSEMVAVVTD KWSPWTWASS VRALPFHPKD IMGAFSHSEM bmy_17146T0/1-517 ---------- ---------- ---------- --TFPF---- ---------- BACU007743/1-503 TVV------- ---------- ---------- ---------- -------CEL ENSP00000265361/1-751 TIAKINFKVL DSEMVAVVTD KWSPWTWASS VRALPFHPKD IMGAFSHSEM ENSBTAP00000008076/1-751 TIAKINFKVL DSEMVAVVTD KWSPWTWASS VRALPFHPKD IMGAFSHSEM 801 850 ENSTTRP00000008290/1-751 QMINQYCKDT RQQHQHGEES QKMRGDYGKL KALINSRKSR NRRNQLPES bmy_17146T0/1-517 ---------- ---------- ---------- ---------- --------- BACU007743/1-503 Q--------- ---------- ---------- ---------- --------- ENSP00000265361/1-751 QMINQYCKDT RQQHQQGDES QKMRGDYGKL KALINSRKSR NRRNQLPES ENSBTAP00000008076/1-751 QMINQYCKDT RQQHQQGEES QKMRGDYGKL KALINSRKSR NRRNQLPES