KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:16 2014 Check: 00 .. Name: ENSP00000252826/1-1214 Len: 1314 Check: 8587 Weight: 1.00 Name: ENSBTAP00000008077/1-1207 Len: 1314 Check: 4120 Weight: 1.00 Name: ENSTTRP00000016205/1-1227 Len: 1314 Check: 5034 Weight: 1.00 Name: bmy_06393T0/1-1178 Len: 1314 Check: 4317 Weight: 1.00 Name: BACU002206/1-1206 Len: 1314 Check: 3548 Weight: 1.00 // 1 50 ENSP00000252826/1-1214 ---------- ---------- ---------- -----MVVPE KEQSWIPKIF ENSBTAP00000008077/1-1207 ---------- ---------- ---------- -----MVGAE KEQSWIPKIF ENSTTRP00000016205/1-1227 AHLEPGLVDR MPGVG----- --------GF GGCGSMVGAE KEQSWIPKIF bmy_06393T0/1-1178 GWAGKWRIRF VQGASRTWVG GGNAGSRIGC GGCGSMVGAE KEQSWIPKIF BACU002206/1-1206 ---------- ---------- ---------- -----MVGAE KEQSWIPKIF 51 100 ENSP00000252826/1-1214 KKKTCTTFIV DSTDPGGTLC QCGRPRTAHP AVAMEDAFGA AVVTVWDSDA ENSBTAP00000008077/1-1207 KKKTCTTFVA DPTDSGGSLC QCGHPRGAHP SVAVEDAFGA AVVTVWDSDL ENSTTRP00000016205/1-1227 KKKTCTTFIV DPTDAGXXLC QCGQPRCAHP SVAVEDAFGA AVVTVWDSDL bmy_06393T0/1-1178 KKKKCTTFIV DPTDAGGTLC QCGQPRCAHP SVAVEDAFGA AMVTVWDSDL BACU002206/1-1206 KKKTCTTFIV DPTDAGGTLC QCGQPRCAHP SVAVEDAFGA AVVTVWDSDL 101 150 ENSP00000252826/1-1214 HTTEKPTDAY GELDFTGAGR KHSNFLRLSD RTDPAAVYSL VTRTWGFRAP ENSBTAP00000008077/1-1207 HTTEKPTDAF GDLDFLGAGR KISNFLRLSD RTDPATVYTL VTKVWGFRAP ENSTTRP00000016205/1-1227 HTTEKPTDAF GDLDFLGAGR KASNFLRLSD RTDPATVYNL VTNIWGFQAP bmy_06393T0/1-1178 HTTEKPTDAF GDLDFLGAGR KASNFLRLSD RTDPATVYNL VTNIWGFQAP BACU002206/1-1206 HTTEKPTDAF GDLDFLGAGR KASNFLRLSD RTDPATVYNL VTNIWGFQAP 151 200 ENSP00000252826/1-1214 NLVVSVLGGS GGPVLQTWLQ DLLRRGLVRA AQSTGAWIVT GGLHTGIGRH ENSBTAP00000008077/1-1207 NLVVSVLGGS GGPILQTWLQ DLLRRGLVRA AQSTGAWIVT GGLHKGIGRH ENSTTRP00000016205/1-1227 NLVVSVLGGS GGPTLQTWLQ DLLRRGLVRA AQNTGAWIVT GGLHKGIGRH bmy_06393T0/1-1178 NLVVSVLGGS RGPTLQTWLQ DLLRRGLVRA AQNTGAWIVT GGLHKGIGRH BACU002206/1-1206 NLVVSVLGGS GDPTLQTWLQ DLLRRGLVRA AQNTGAWIVT GGLHKGIGRH 201 250 ENSP00000252826/1-1214 VGVAVRDHQM ASTGGTKVVA MGVAPWGVVR NRDTLINPKG SFPARYRWRG ENSBTAP00000008077/1-1207 VGAAVRDHQT ASTGGSKVVA MGVAPWGVVR NRDTLTNPKG SFPARYRWRG ENSTTRP00000016205/1-1227 VGVAVRDHQT ARTGGXXXXX XXXXXXXXXX XXXXXXXXXG SFPARYRWRG bmy_06393T0/1-1178 VGVAVRDHQM ARTGGNKVVA MGVAPWGVVR NRHTLINPKG SFPARYRWRG BACU002206/1-1206 VGVAVRDHQT ARTGGNKVVA MGVAPWGVVR NRHTLINPKG SFPARYRWHG 251 300 ENSP00000252826/1-1214 DPEDGVQFPL DYNYSAFFLV DDGTHGCLGG ENRFRLRLES YISQQKTGVG ENSBTAP00000008077/1-1207 DPEDGVQFPL DYNYSAFFLV DDGTHGRLGG ENRFRLGFES YLAQQKTGVG ENSTTRP00000016205/1-1227 DPEDGVQFAL DYNYSAFLLV DDGTHGRLGG ENRFRLGFES YLAQQKTGV- bmy_06393T0/1-1178 DPEDGVQFPL DYNYSAFLLV DDGTHSRLGG ENRFRLGFES YLAQQKTGVG BACU002206/1-1206 DPEDGVHFPL DYNYSAFLLV DDGTHSRLGG ENRFRLGFES YLARQKTGVG 301 350 ENSP00000252826/1-1214 GTGIDIPVLL LLIDGDEKML TRIENATQAQ LPCLLVAGSG GAADCLAETL ENSBTAP00000008077/1-1207 GTGIDIPVLL LLIDGDEKML KQIEDATQAQ LPCLLVAGSG GAADCLAEIL ENSTTRP00000016205/1-1227 GTGIDIPVLL LLIDGDEKML KRIEKATQAQ LPCLLVAGSG GAADCLAEI- bmy_06393T0/1-1178 GTGIDIPVLL LLIDGDEKML KRIEDATQAQ LPCLLVAGSG GAADCLAEI- BACU002206/1-1206 GTGIDIPVLL LLIDGDEKML KQIENATQAQ LPCLLVAGSG GAADCLAEI- 351 400 ENSP00000252826/1-1214 EDTLAPGSGG ARQGEARDRI RRFFPKGDLE VLQAQVERIM TRKELLTVYS ENSBTAP00000008077/1-1207 EDTLAPGSGG GRRREPRDLI KRFFPKGDPE VLQAQVERIM TRKELLTVYS ENSTTRP00000016205/1-1227 -YTLAPGTGG GRRCEAQDLI KRFFPKGDPE VLQAQVERIM SRKELLTVYS bmy_06393T0/1-1178 -HTLAPGSGG GRRCDAQDLI KRFFPKGDPE ILQAQVERIM TRKELLTVYS BACU002206/1-1206 -HTLAPGSGG GRRCEAQDLI KRFFPEGDPE ILQAQVERIM TRKELLTVYS 401 450 ENSP00000252826/1-1214 SEDGSEEFET IVLKALVKAC GSSEASAYLD ELRLAVAWNR VDIAQSELFR ENSBTAP00000008077/1-1207 TDDGPEEFET IVLRALVKAC GSSEASAYLD ELRLAVAWNR VDIAQSELFR ENSTTRP00000016205/1-1227 TDDGPEEFET IVLKALVKAC GTSEASAYLD ELRLAVAWNR VDIAQSELFR bmy_06393T0/1-1178 ADDGPEEFET IVLKALVKAC GSSEASAYLD ELRLAVAWNR VDIAQSELFR BACU002206/1-1206 ANDGPEEFET IVLKALVKAC GSSEASAYLD ELRLAVAWNR VDIAQSELFR 451 500 ENSP00000252826/1-1214 GDIQWRSFHL EASLMDALLN DRPEFVRLLI SHGLSLGHFL TPMRLAQLYS ENSBTAP00000008077/1-1207 GDIQWRSFHL EASLMDALLN DRPEFVRLLI SHGLSLGHFL TPVRLAQLYN ENSTTRP00000016205/1-1227 GDIQWRSFHL EASLMDALLN DRPEFVRLLI SHGLSLGHFL TPTRLAQLYN bmy_06393T0/1-1178 GDIRWRSFHL EASLMDALLN DQPEFVRLLI SHGLSLGCFL TPTRLAQLYN BACU002206/1-1206 GDIRWRSFHL EASLMDALLN DRPEFVRLLI SHGLSLDRFL TPTRLAQLYN 501 550 ENSP00000252826/1-1214 AAPSNSLIRN LLDQASHSAG TKAPALKGGA AELRPPDVGH VLRMLLGKMC ENSBTAP00000008077/1-1207 AAPPNSLIHN LLDQVSHGAS TKAPALK-PS EEPQFPKVGQ VLRMLLGKTC ENSTTRP00000016205/1-1227 AAPPNSLIHS LLDQVSHSTG NKGPVSE-PS VEPQPPKVGQ VLRMLLGKSC bmy_06393T0/1-1178 AAPPNSLIHS LLDQVSHGTG NKGPVSK-PS SEPQPPKVGQ VLRMLLGKTC BACU002206/1-1206 AVPPNSLIHS LLDQASHGTG NKSPVSK-PS SEPQPPKVGQ VLRMLLGKTC 551 600 ENSP00000252826/1-1214 APRYPSGGAW DPHPGQGFGE SMYLLSDKAT SPLSLDAGLG QAPWSDLLLW ENSBTAP00000008077/1-1207 APTFPAGGT- --RRSDNSRE NSFMLSDKAA SGL-MEAVPG QAPWSDLLLW ENSTTRP00000016205/1-1227 APTFPAGGT- --HLGDGSME NSFLPWDKAT SEFLLEAVPE QAPWSDLLLW bmy_06393T0/1-1178 APTFPAGGT- --HQGDGSKE D--------- ---------- ---------- BACU002206/1-1206 APTFPAGGT- --QQGDGSKE DSYLMWDKAT SELVLEAIPG QAPWIDLLLW 601 650 ENSP00000252826/1-1214 ALLLNRAQMA MYFWEM---G SNAVSSALGA CLLLRVMARL EPDAEEAARR ENSBTAP00000008077/1-1207 ALLLNRAQMA LYFWEM---G SNSVASALGA SLLLRVLGRL ETEAEEAARR ENSTTRP00000016205/1-1227 ALLLNRAQMA VYFWEMXXXX XXSVASALGA CLLLRVLGRL EAETEEAARR bmy_06393T0/1-1178 ---------- ---------G SNSVALALGA CLLLRVLGRL ETEAEEAARR BACU002206/1-1206 ALLLNRAQMA VYFWEM---G SNSVASALGA CLLLRVLGRL ETEAEEAARR 651 700 ENSP00000252826/1-1214 KDLAFKFEGM GVDLFGECYR SSEVRAARLL LRRCPLWGDA TCLQLAMQAD ENSBTAP00000008077/1-1207 KELAAKFEGL GVDLFGECYR SSEERSARLL LRRCPLWGDA TCLQLATQAD ENSTTRP00000016205/1-1227 KDLAAKFEGL GVDLFGKCYR SSEERAAHLL LWRCPLWGDA TCLHLAMQAD bmy_06393T0/1-1178 KDLAAKFEGL AVDLFGECYR SSEERAAHLL LWRCPLWGDA TCLHLAMQAD BACU002206/1-1206 KDLAAKFEGL GVDLFGECYR SSEERAAHLL LWRCPLWGDA TCLHLAMQAD 701 750 ENSP00000252826/1-1214 ARAFFAQDGV QSLLTQKWWG DMASTTPIWA LVLAFFCPPL IYTRLITFRK ENSBTAP00000008077/1-1207 ARAFFAQDGV QSLLTQKWWG EMDSTTPIWA LVLAFFCPPL IYTDLITFRK ENSTTRP00000016205/1-1227 ARAFFAQDGV QSLLTQKWWG EMDSTTPIWA LVLAFFCPPL IYTNLITFRK bmy_06393T0/1-1178 ARAFFAQDGV QSLLTQKWWG EMDSTTPIWA LVLTFFCPPL IYTNLITFRK BACU002206/1-1206 ARSFFAQDGV QSLLTQKWWG EMDSTTPIWA LVLTFFCPPL IYTNLITFRK 751 800 ENSP00000252826/1-1214 SEEEPTREEL EFDMDSVING EGPVGTADPA EKTPLGVPRQ SGRPGCCGGR ENSBTAP00000008077/1-1207 SDEEPTQKDP MLDVDGDING EGPVEATEPP EKMPLGVLRP PRHRDCCGG- ENSTTRP00000016205/1-1227 PDEEPMQKDL AFDMDRDISG EGPGEPTDPN EKMPLRVLGR P-RRSCCGG- bmy_06393T0/1-1178 PDEEPTQKNL VVDTNRDVIG EGPGKTTDHP GKRMLS---- --RRSCCGG- BACU002206/1-1206 PDEEPTQKDL AFDMDRDVSG EGPGETTDPP EKTPLGVLRP PSRRSCCGG- 801 850 ENSP00000252826/1-1214 CGGRRCLRRW FHFWGAPVTI FMGNVVSYLL FLLLFSRVLL VDFQPAPPGS ENSBTAP00000008077/1-1207 CLPR--LRRW PQFWGAPVTA FMGNVVSYLL FLLLFARVLL IDFEPERPSV ENSTTRP00000016205/1-1227 C--R--LRRW PQFWGAPVTS FMGNVVSYLL FLLLFTHVLL IDFQPEKPSA bmy_06393T0/1-1178 FPQR--LRRW PQFWGAPVTS FMGNVVSYLL FLLLFAHVLL IDFQPETPSA BACU002206/1-1206 CPQR--LRRW PQFWGAPVTS FMGNVVSYLL FLLLFAHVLL IDFQPETPSA 851 900 ENSP00000252826/1-1214 LELLLYFWAF TLLCEELRQG LSGGGGSLAS GGPGPG--HA SLSQRLRLYL ENSBTAP00000008077/1-1207 LELLLYFWAF TLLCEEFRQG LGSGLGSLAM GGPGTDSHRA PLRRRLQLYL ENSTTRP00000016205/1-1227 LELLLYFWAF TLLCEELRQG LGDSLGSLAM GAPRTDSHQA PLRRRLHLYL bmy_06393T0/1-1178 LELLLYFWAF TLLCEEFRQG LGSGLGSLAM GAPRTDSHQD PLRRRLHLYL BACU002206/1-1206 LELLLYFWAF TLLCEEFRQG LGGGLGSLAM GAPRTDSHQA PLRRRLHLYL 901 950 ENSP00000252826/1-1214 ADSWNQCDLV ALTCFLLGVG CRLTPGLYHL GRTVLCIDFM VFTVRLLHIF ENSBTAP00000008077/1-1207 SDAWNQCDLV ALACFVLGVG CRLTPGLYDL GRTVLCLDFM IFTLRLLHIF ENSTTRP00000016205/1-1227 SDAWNQCDMV ALTCFLMGVG CRLTAGLYDL GRTVLCLDFM IFTLRLLHIF bmy_06393T0/1-1178 SDAWNQCDLV ALTCFLLGVG CRLTAELYDL GRTVLCLDFM IFTLRLLHIF BACU002206/1-1206 SDAWNQCDLV ALTCFLLGVG CRLTAGLYDL GRTVLCLDFM IFTVRLLHIF 951 1000 ENSP00000252826/1-1214 TVNKQLGPKI VIVSKM---- ---------- ---------- ---------- ENSBTAP00000008077/1-1207 TVNKQLGPKI VIVSKM---- ---------- ---------- ---------- ENSTTRP00000016205/1-1227 TVNKHLGPKI VIVNKM---- ---------- ---------- ---------- bmy_06393T0/1-1178 TVNKQLGPKI VMVNKMVRGW GRACVGGARG GKGRSQGRCR GLWNAMSRKE BACU002206/1-1206 TVNKQLGPKI VMVNKM---- ---------- ---------- ---------- 1001 1050 ENSP00000252826/1-1214 ---------- ---------- ------MKDV FFFLFFLGVW LVAYGVATEG ENSBTAP00000008077/1-1207 ---------- ---------- ------VKDV FFFLFFLGVW LVAYGVATEG ENSTTRP00000016205/1-1227 ---------- ---------- ------MKDV FFFLFFLGVW LVAYGVATEG bmy_06393T0/1-1178 AGLWMQGRGQ SREGQGPDWS HLPLLQMKDV FFFLFFLGVW LVAYGVATEG BACU002206/1-1206 ---------- ---------- ------MKDV FFFLFFLGVW LIAYGVATEG 1051 1100 ENSP00000252826/1-1214 LLRPRDSDFP SILRRVFYRP YLQIFGQIPQ EDMDVALMEH SNCSSEPGFW ENSBTAP00000008077/1-1207 LLRPQDRSLP NILRRVFYRP YLQIFGQIPQ GEMDVALMEH GNCSLGQGSW ENSTTRP00000016205/1-1227 LLRPQDRNLS NILRRVFYRP YLQIFGQIPQ EDIDASLMKP DNCSSEKGIW bmy_06393T0/1-1178 LLRPQDRNLS NILRRVFYRP YLQIFGQIPQ EDIDAGLMKP GNCSSEKGLW BACU002206/1-1206 LLRPQDRNLA NILRRVFYRP YLQIFGQIPQ EDIDAGLMKP DNCSSEKGLW 1101 1150 ENSP00000252826/1-1214 AHPPGAQAGT CVSQYANWLV VLLLVIFLLV ANILLVNLLI AMFSYTFGKV ENSBTAP00000008077/1-1207 GHPEGNLSGK CVSLYANWLV VLLLVVFLLV ANILLLNLLI AMFSHTFGKV ENSTTRP00000016205/1-1227 ARPSGTQAGS CVSIYANWLV VVLLIIFLLV ANILLVNLLI AMFSYTFGKV bmy_06393T0/1-1178 ARPLRTQAGS CVSLYANWLV LVLLIIFLLV ANILLVNLLI AMFSYTFGKV BACU002206/1-1206 ARPSRTQAGS CVSLYANWLV LVLLVIFLLV ANILLVNLLI AMFSYTFGKV 1151 1200 ENSP00000252826/1-1214 QGNSDLYWKA QRYRLIREFH SRPALAPPFI VISHLRLLLR QLCRRPRSPQ ENSBTAP00000008077/1-1207 QGNSDLYWKA QRYSLIREFH SRPALAPPLI FISHVRSLIH RF-RRRRARL ENSTTRP00000016205/1-1227 QGNSDLYWK- QRYSLIREFH SRXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06393T0/1-1178 QGNSDLYWKA QRYRLIREFH SRPALAPPLI VISHVLSLIR RL-RRRRASL BACU002206/1-1206 QGNSDLYWKA QRYSLIREFH SRPALAPPLI VISHVLSLIR RL-RRRRASL 1201 1250 ENSP00000252826/1-1214 PSSPALEHFR VYLSKEAERK LLTWESVHKE NFLLARARDK RESDSERLKR ENSBTAP00000008077/1-1207 PPSPDVEHFR VHLSKEAERR LLTWESVQKE NFLLARARDK RESNSERLKR ENSTTRP00000016205/1-1227 XXXXXXXXXX VHLSKEAERK LLTWESVQKE SFLLERARDK RESDSESLKR bmy_06393T0/1-1178 PRSAVVEHFR -------ERP --AW------ -------RKR EKPRGRNLER BACU002206/1-1206 TPKAVVEHFR VHLSKEAERR LLTWESVQKE NFLLEQARDK RESDSESLKR 1251 1300 ENSP00000252826/1-1214 TSQKVDLALK QLGHIREYEQ RLKVLEREVQ QCSRVLGWVA EALSRSALLP ENSBTAP00000008077/1-1207 TSQKVDTALK QLTQIREYEQ RLKGLELEVQ HCTRVLGWVA EALSRSALLP ENSTTRP00000016205/1-1227 TSQKVDTALQ QLRQIREHEQ RLKGLEQEVQ YCSRVLGWVA EALSRSALLP bmy_06393T0/1-1178 ---------- --------KK SMYRLEEDAQ E--------- ---------- BACU002206/1-1206 TSQKVDTALQ QLRQIREYEQ RLKGLEQEVQ YCSRVLGWVA EALSRSALLP 1301 1350 ENSP00000252826/1-1214 PGGPPPPDLP GSKD ENSBTAP00000008077/1-1207 PGGPPPPIPP GPKD ENSTTRP00000016205/1-1227 PGGPPPPASP GPKD bmy_06393T0/1-1178 ---------- ---H BACU002206/1-1206 PGGPLPPASP GPKD