KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:17 2014 Check: 00 .. Name: ENSBTAP00000008080/1-681 Len: 709 Check: 6531 Weight: 1.00 Name: ENSP00000268130/1-686 Len: 709 Check: 9464 Weight: 1.00 Name: ENSTTRP00000014720/1-687 Len: 709 Check: 1870 Weight: 1.00 Name: bmy_15715T0/1-631 Len: 709 Check: 6083 Weight: 1.00 Name: BACU016084/1-530 Len: 709 Check: 1788 Weight: 1.00 // 1 50 ENSBTAP00000008080/1-681 --------MA SPKGSRSQKM KLPIFTRKGT LEVPSPTEKD WSKDDEDDWV ENSP00000268130/1-686 --------MS FPRGSQTQKI KHPIGTRKGP LEVPPPTEKD WPKDDEQDHV ENSTTRP00000014720/1-687 --------MT SPKGSRAQKL KLPTLTRKGT LEVPSPTEKD WSKDDEEDWV bmy_15715T0/1-631 MFPAPPSVMT SPKGSRAQKL KLPTITRKGT LEVPSPTEKD WSKDDEEDWV BACU016084/1-530 --------MT SPKGSQAQKL KLPTITRKGT LEVPSPTEED WSKDDEEDWV 51 100 ENSBTAP00000008080/1-681 FKDPDQEQDS LPQPYRMINK MVNSLFDRSW EMIEARDTSK KAELRRTLPT ENSP00000268130/1-686 LVDPDEELDS LPQPYRMINK LVNLLFDQSW EIIEERNALR EAESSQIQPT ENSTTRP00000014720/1-687 FKGPDQEQDS LPQPYRMINK LVNFLFDHSW EIIEERDAS- EAELSCIXXX bmy_15715T0/1-631 FKGPDQEQDS LPQPYRMINK LVNFLFDHSW EIIEEREASR KAELSRIQPT BACU016084/1-530 FKGPDQEQDS LPQPYRMINK LVNFLFDHSW EIIEEREASR KAELSRIQPT 101 150 ENSBTAP00000008080/1-681 IYHPLRESKL NTMPNCMDVS QDYVFIGGSK GFSIYNLHNA KQLYVWEKLK ENSP00000268130/1-686 VYPPLGEIQL NKMPNCMAVS QDYVFIGGAK GFSIYNLYSA KQIYAWEKLK ENSTTRP00000014720/1-687 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15715T0/1-631 IYPPLLESKL NKMPNCMAIS QDYVFIGGTK GFSIYNLYNA KRIYVWEKLK BACU016084/1-530 IYPPLLESKL NKMPNCMAIS QDYVFIGGTK GFSIYNLYNA KRIYVWEKLK 151 200 ENSBTAP00000008080/1-681 VDVISIWATD LGSEILIAPV DEMGIVRLFY FYKDGLYLIK AINELEDASK ENSP00000268130/1-686 VDVTSIWATD LGNEILIAPV DEMGIIRLFY FYKEGLYLVK AINEVDDTSK ENSTTRP00000014720/1-687 XXXXXXXXXX XXXXXXXXXX XXXXIIRLFY FYKDGLYLIK AINEADDTSK bmy_15715T0/1-631 VDVTSIWATD LGSEILIASV DEMGIIRLFY FYKDGLYLIK AINEVDDTSK BACU016084/1-530 VDVTSIWATD LGSEILIASV DEMGIIRLFY FYKDGLYLIK AINEADDTSK 201 250 ENSBTAP00000008080/1-681 QTTCIKMEIS KGGNFAALLL QGAGDIWLDV YKLPKESWIK EVQYPQLAVN ENSP00000268130/1-686 QTTCIKMEIS QGGDFAAFLL QGAGDIWLDV YKLPKETWLK KLEHPQLTSN ENSTTRP00000014720/1-687 QTTCIKMEIS EGGDFAAFLL QGAGDIWLDV YKLPKESWLK EVEHPQLTIN bmy_15715T0/1-631 QTICIKMEIS EGGDFAAFLL QGAGDIWLDV YKLPKESWLK EVEHPQLTIN BACU016084/1-530 QTTCIKMEIS EGGDFAAFLL QGT------- ---------- ---------- 251 300 ENSBTAP00000008080/1-681 TKKKIRQQLQ LNTPDSVTAD SLDTDMNISF RGDVKLSLPV QIMKIKPPKP ENSP00000268130/1-686 PKKKVR-QPQ LNSLGPISAD PLEMDANVSF KGDIKLSLPV YIMKIKPPKP ENSTTRP00000014720/1-687 PKKKVR-QLQ LNTLDPMTAD NLEMDINIYF RGDAKLSVPV YIMKIKPPKP bmy_15715T0/1-631 PKKKVR-QLQ LNTLDPMTAD NLET------ ---------- ---------- BACU016084/1-530 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000008080/1-681 ITG-TYKSMN TVFPSISDLQ VIGSGTKVSF LTLMIWDHIS RTASYCFRKY ENSP00000268130/1-686 VTGTTFKSPL EVFAKIKDCY GLGSGQN-HF IKDSQWEQQA EIFNASYKKY ENSTTRP00000014720/1-687 VAGTTFKSPL EVFAKIEDCC GLGSGQN-HF IKDSQWERQA AIFNDTFRKY bmy_15715T0/1-631 ---------- -----IEDCC GLGSGQN-HF IKDSQWEQQA AIFNATFKKY BACU016084/1-530 ----TFKSPL EVFAKIEDCC GLGSGQN-HF IKDSQWEQQA AIFNATFKKY 351 400 ENSBTAP00000008080/1-681 IQIQSFLSIS FPITFHFLLS HLLLS--PQW RNPSNIVLAQ GIHTERALSP ENSP00000268130/1-686 LDREWEEEPL STATFYFLLP SCLFAMPPEV KGPSGMACVL GIHWTRSHNF ENSTTRP00000014720/1-687 LDGEWEEELL SMATFHFLLP SCIIAMPVEV KSPPGVACVI GVHWTGSHNF bmy_15715T0/1-631 LDGEWEEEPL SMATFHFLLP SCIIAMPVEV KSPPGVACVI GVHWTGSHNF BACU016084/1-530 LDGEWEEEPL SMATFHFLLP SCIIAMPVEV KSPPGVACVI GVHWTGSHNF 401 450 ENSBTAP00000008080/1-681 WTSSLRNTTV QR-HSLGVTP QLASHPLCLH SSGPLKATQL SVTCS----- ENSP00000268130/1-686 FLYSLNRTLK DKADPEGVWP ---------- CAAPIAVSQL SCSSSYLVLA ENSTTRP00000014720/1-687 FLYSLNRTLK DKVDPEGVWP ---------- CAAPIAVSQL SCCCSYLVLA bmy_15715T0/1-631 FLYSLNRTLK DKADPEGVWP ---------- CAAPIAVSQL SGCYSYLVLA BACU016084/1-530 FLYSLNRTLK DKADPEGVWP ---------- CAAPIAVSQL SGCYSYLVLA 451 500 ENSBTAP00000008080/1-681 --------WQ QKSGSSLAGC VHT--ILCGS SHPEDGASVH H-QGIWSQGS ENSP00000268130/1-686 CEDGVLTLWD LAKGFPLGVA ALPQGCFCQS IHFLKYFSVH KGQNMYPEG- ENSTTRP00000014720/1-687 CEDGVLTLWD LAKGLSLGVI ALPERCFCQS IHFLKYFLVH EGQNMYPEG- bmy_15715T0/1-631 CEDGVLTLWD LAEGLSLGVI ALPERCLCQS IHFLKYFLVH EGQNMYPEG- BACU016084/1-530 CEDGVLTLWD LAEGLSLGVI ALPERCLCQS IHFLKYFLVH KGQNMYPEG- 501 550 ENSBTAP00000008080/1-681 QVQLETVKLQ LATHFPPHSL PAEHTCGDIY SKVVDRPVKY LDEAICAVAP ENSP00000268130/1-686 QVKSQMKCVV LCTDASLHLV EASGTQGPTI SVLVERPVKH LDKTICAVAP ENSTTRP00000014720/1-687 PVKSQMKCVV LCTDASLQLV AATGTQGPTL SVLVERPVKH LDEAICAVAP bmy_15715T0/1-631 PVKSQMKCVV LCTDASLHLV AATGTQRPTL SVL------- ---------- BACU016084/1-530 PVKSRMKCVV LCTDASLHLV AATGTQRPTL SVLVERPVKH LDEAICAVAP 551 600 ENSBTAP00000008080/1-681 VQALPGMVLT FSRDGSVFLM DVAKSQIICS FALPRSYSLA APWNPVFVVS ENSP00000268130/1-686 VPALPGMVLI FSKNGSVCLM DVAKREIICA FAPPGAFPLE VPWKPVFAVS ENSTTRP00000014720/1-687 VQALPGMVLT FSSNGSVHLM DVAKPQIVCA FAPPRSYHLA VPWKPVFVVS bmy_15715T0/1-631 -------VLI FSSNGSVHLM DVAKPQIVCA FAPPRSYHLA VPWKPVFGVS BACU016084/1-530 VQALPGMVLI FSSNGSVHLM DVAKPQIVCA FAPPRSYHLV VPWKPVFGVS 601 650 ENSBTAP00000008080/1-681 LHHPCFLLRG DHPDEIGSAS KAEDIPNSIF YFNFEDYPLL KNFSRNCTIP ENSP00000268130/1-686 PDHPCFLLRG DYSHETASTD DA-GIQYSVF YFNFEACPLL ENISKNCTIP ENSTTRP00000014720/1-687 LYHACFLLRG DHPDEIGSAS QAKDIPNSIF YFNFEAYPLL EQISRNCTIP bmy_15715T0/1-631 LHHPCFLLRG DHPDEIGSAS QAEDIPNSIF YFNFEAYPLL EQISRNCTIP BACU016084/1-530 LHHPCFLLRG ESDE------ ---------- ---------- ---------- 651 700 ENSBTAP00000008080/1-681 QASILAHPTF AQALPLEERC EKFFQKSIQN LAKYKVKEEE HWTRLRRYSL ENSP00000268130/1-686 QRD-LDNMAF PQALPLEKRC ERFLQKSYRK LEKNPEKEEE HWARLQRYSL ENSTTRP00000014720/1-687 QANVLDDTTF PQVLPLEERC ENFFQKRFQK LVKNKVKEEE YWTRLRRYSS bmy_15715T0/1-631 QANVLDDTTF PQVLPLEERC ENFFQKRFQK PVKNKVKEQE HWTRLQRYSL BACU016084/1-530 ---------- ---------- --------RE VETAQVEAPA AWAQT----- 701 750 ENSBTAP00000008080/1-681 LLQKEDLKK ENSP00000268130/1-686 SLQRENFKK ENSTTRP00000014720/1-687 LLQRENLNK bmy_15715T0/1-631 LLQRENLKK BACU016084/1-530 ---------