KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:18 2014 Check: 00 .. Name: ENSP00000374390/1-731 Len: 749 Check: 7037 Weight: 1.00 Name: ENSBTAP00000008088/1-746 Len: 749 Check: 1239 Weight: 1.00 Name: ENSTTRP00000016007/1-734 Len: 749 Check: 3712 Weight: 1.00 Name: bmy_11853T0/1-558 Len: 749 Check: 4408 Weight: 1.00 Name: BACU020503/1-747 Len: 749 Check: 2380 Weight: 1.00 // 1 50 ENSP00000374390/1-731 MSLFLSNLST NDSSLWKENH NSTDLLNPPG TLNIYLFCLT CLMTFAALVG ENSBTAP00000008088/1-746 MSVFLSNLST NDSNLWKGNH NSTDPLNPPG TVNIYLFCLT CLMTLAALAG ENSTTRP00000016007/1-734 MSVFLSNLST NDSSLWKENH NSTDLLNPPG TVNIYLFCLT CLMTLAALAG bmy_11853T0/1-558 MSVFLSNLST NDSSLWKENH NSTDLLNPPG TVNIYLFCLT CLMTVAALAG BACU020503/1-747 MSVFLSNLST NDSSLWKENH NSTDLLNPPG TVNIYLFCLT CLMTVAALAG 51 100 ENSP00000374390/1-731 SIYSLISLLK MQNRTVVSML VASWSVDDLM SVLSVTIFMF LQWPNEVPGY ENSBTAP00000008088/1-746 SIYSLVSLLK MRNRTVVSML VASWSGDDLM SVLSVTIFMY LQWPNGVSDY ENSTTRP00000016007/1-734 SIYSLVSLMK TRNRTVVSML VASWSGDDLM SVLSVTIFXX XXXXXXXSDY bmy_11853T0/1-558 SIYSLVSLMK TRNRTVVSML VASWSGDDLM SVLSVTIFMF LQWPNEVSDY BACU020503/1-747 SIYSLVSLMK TRNRTVVSML VASWSGDDLM SVLSVTIFMF LQWPNEVSDY 101 150 ENSP00000374390/1-731 FQFLCTTSAL MYLCQGLSSN LKATLLVSYN FYTMHRGVGS QTASRRSGQV ENSBTAP00000008088/1-746 FQSLCTISAL LYLCQGLSSN LKATLLVSYN FYTMHRAVGS QATSRRSGQV ENSTTRP00000016007/1-734 FQSLCTTSAL LYLCQGLSSN LKATLLVSYN FYTMHRAVGS QAASRRSGQV bmy_11853T0/1-558 FQALCTTSAL LYLCQGLSSN LKATLLVSYN FYTMRRAVGS QAASRRSGQV BACU020503/1-747 FQSLCTTSAL LYLCQGLSSN LKATLLVSYN FYMMRRAVGR QAASRRSGQV 151 200 ENSP00000374390/1-731 LGVVLTVWAA SLLLSALPLC GWGAFVRTPW GCLVDCSSSY VLFLSIVYAL ENSBTAP00000008088/1-746 LGVALTVWAA SLLLSALPLC GWGAFVRTPW GCLADCSSSY VLLLFAVYTS ENSTTRP00000016007/1-734 LGVALTVWAA SLLLSALPLC GWGAFVRTPW GCLADCSSSY VLLLFAVYTS bmy_11853T0/1-558 LGVALTVWTA SLLLSALPLC GWGAFVRTPW GCLADCSSSY VLLLFAVYTS BACU020503/1-747 LGVALTVWAA SLLLSALPLC GWGAFVRTPW GCLADCSSSY VLLLFAVYTS 201 250 ENSP00000374390/1-731 AFGLLVGLSV PLTHRLLCSE EPPRLHSNYQ EISRGASIPG TPPTA-GRVV ENSBTAP00000008088/1-746 AFGILAGLSV PLTHQLLCSE QPPRLHANYQ EISRGTSTPG TPATG-GRVL ENSTTRP00000016007/1-734 AFGLLAGLSV PLTHQLLCSE EPPRLHANYQ EISRGASTPG TPSTR-GRVL bmy_11853T0/1-558 AFGLLAGLSV PLTHQLLCSE EPPRLHANYQ EISRGASTPG TPSTG-GRVL BACU020503/1-747 AFGLLAGLSV PLTHQLLCSE EPPRLHANYQ EISRGASTPG TPSTGVGRVL 251 300 ENSP00000374390/1-731 SLSPEDAPGP SLRRSGGCSP SSDTVFGPGA P--------- -----AAAGA ENSBTAP00000008088/1-746 SLSPDEAPGP APRYSGGCSP SSDTVFGPGP PARSS-GPGQ EPGHGAAAVA ENSTTRP00000016007/1-734 SPSPDDAPGP ALRCSGGCSP SSDTVFGPGL P--------- -----ATAVA bmy_11853T0/1-558 SLSPDDAPGP ALRCSGGCSP SSDTVFGPGL PAREGLGLGQ GPGRGATAVA BACU020503/1-747 SLSPDDAPGP ALRCSGGCSP SSDAVIGPGL PARA--GLGQ GPGRAAAAVA 301 350 ENSP00000374390/1-731 EACRRENRGT LYGTRSFTVS VAQKRFALIL ALTKVVLWLP MMMHMVVQNV ENSBTAP00000008088/1-746 GDCRRKNRGT LFGTRSFTVS VAQKRFSLIL ALIKVTLWLP MMIHMAVQHI ENSTTRP00000016007/1-734 GACRREDRGT LYGTRSFTVS VAQKRFSLIL AMTKVTLWLP MMIHMVVQHV bmy_11853T0/1-558 GACRREDRGT LYGTRSFTVS VAQKRFSLIL AMTKVTLWLP MMIHMVVQHI BACU020503/1-747 GACRREDRGT LYGTRSFTVS VAQKRFSLIL AMTKVTLWLP MMIHMVVQHV 351 400 ENSP00000374390/1-731 VGFQSLPLET FSFLLTLLAT TVTPVFVLSK RWTHLPCGCI INCRQNAYAV ENSBTAP00000008088/1-746 LGFKSLPFEM LSFMLTLLAT TVTPVFVLSK HWTHLPCGCI INCKQNTYAV ENSTTRP00000016007/1-734 VGFQSLPFET LSFLLTLLAT AVTPVFVLSK HWTHLPCGCI INCKQNTYAV bmy_11853T0/1-558 VGSQSLPFET LSFLLTLLAT TVTPVFVLSK HWTHLPCGCI INCKQNTYAV BACU020503/1-747 VGSPSLPFET LSFLLTLLAT TVTPVFVLSK HWTHLPCGCI INCKQNTYAV 401 450 ENSP00000374390/1-731 ASDGKKIKRK GFEFNLSFQK SYGIYKIAHE DYYDDDENSI FYHNLMNSEC ENSBTAP00000008088/1-746 TSDGKKPKRR CFEFNLSFQQ SYGIYKIAHE DYYDDDENST ACHNLMNYEC ENSTTRP00000016007/1-734 TSDGKKPKRR CFEFNLSFQR SYGIYKIAHE DYYDDDENST SYHNPMNYEC bmy_11853T0/1-558 TSDGKKPKRR CFEFNLSFQR SYGIYKIAHE DYYDDDENSI SYHNLMNYEC BACU020503/1-747 TSDGKKPKRR CFEFNLSFQR SYGIYKIAHE DYYDDDENSI SYHNLMNYEC 451 500 ENSP00000374390/1-731 ETTKDPQRDN RNIFNAIKVE ISTTPSLDSS TQRGINKCTN TDITEAKQDS ENSBTAP00000008088/1-746 TTTKDSQRDT H-IFSAIKVE ISTTPSLDSS TLTGINKCTN TDIIEAEEES ENSTTRP00000016007/1-734 KTTKDSQRDS HNVFNAIKVE ISTTPSLDSS TLKGINKCTN TDIIDAKQDS bmy_11853T0/1-558 KTTKNSQRDS HNIFNAIKVE ISTTPSLDSS TLKGINKCTN TDIIDAKQDS BACU020503/1-747 KTTKNSQRDS HNIFNAIKVE ISTTPSLDSS TLKGINKCTN TDIIDAKQDS 501 550 ENSP00000374390/1-731 NNKKDA---F SDKTGGDINY EETTFSEGPE RRLSHEESQK PDLSDWEWCR ENSBTAP00000008088/1-746 HNERGVDPLL SEKAEGDIKY DETTFLEGPE RRLSHEESQK PDLSDWEWCR ENSTTRP00000016007/1-734 HNEKDVDPLL SEKKEGDIKY DETTLLEGPE RRLSHEESQK PDLSDWEWCR bmy_11853T0/1-558 HNEKGVDPLL SEKTEGDIKY DETTLLEGPE RRLSHEESQK PDLSDWEWCR BACU020503/1-747 HNEKGVDPLL SEKTEGDIKY DESILLEGPE RRLSHEESQK PDLSDWEWCR 551 600 ENSP00000374390/1-731 SKSERTPRQR SGYALAIPLC AFQGTVSLHA PTGKTLSLST YEVSAEGQKI ENSBTAP00000008088/1-746 SKSERTPRQR SGGALAIPLC AFQGTVSLQA PTGKTLSLST YEVSAEGQKI ENSTTRP00000016007/1-734 SKSERTPRQR SGGALAIPLC AFQGTVSLQA PTGKTLSLST YEVSTEGQKI bmy_11853T0/1-558 SKSERTPRQ- ---------- ---------- ---------- ---------- BACU020503/1-747 SKSERTPRQR SGGALAIPLC AFQGTVSLQA PTGKTLSLST YEVSTEGQKI 601 650 ENSP00000374390/1-731 TPASKKIEVY RSKSVGHEPN SEDSSSTFVD TSVKIHLEVL EICDNEEALD ENSBTAP00000008088/1-746 TPASKKIEVY RSKSVGHEPN SEDSASTIAD TSVKIHLEVL EICDNEEALD ENSTTRP00000016007/1-734 TPASKKIEVY RSKSVGHEPN SEDSPSTFAD TSVKIHLEVL EICDNEEALD bmy_11853T0/1-558 ---------- ---------- ---------- ---------- ---------- BACU020503/1-747 TPASKKIEVY RSKSVGHEPN SEDSPSTFAD TSVKIHLEVL EICDNEEALD 651 700 ENSP00000374390/1-731 TVSIISNISQ SSTQVRSPSL RYSRKENRFV SCDLGETASY SLFLPTSNPD ENSBTAP00000008088/1-746 TVSIISNISQ SSTQVRSPSL RYSRKENRFV SCDLGETASY SLFLPTTNPD ENSTTRP00000016007/1-734 TVSIISNISQ SSTQIRSPSL RYSRKENRFV SCDLGETASY SLFLPTSNPD bmy_11853T0/1-558 ---------- ---------- ---------- ---------- ---------- BACU020503/1-747 TVSIISNISQ SSTQVRSPSL RYSRKENRFV SCDLGETASY SLFLPTSNPD 701 750 ENSP00000374390/1-731 GDINISIPDT VEAHRQNSKR QHQERDGYQE EIQLLNKAYR KREEESKGS ENSBTAP00000008088/1-746 GDINISIPDT VEAHRQNSKR QSQETVGYQE EIQLLNKAYR KREEESKGD ENSTTRP00000016007/1-734 GDINISIPDT VEAHRQNSKR QSQERDGYQE EIQLLNKAYR RREEESKDN bmy_11853T0/1-558 ---------- ---------- ---------- ---------- --------- BACU020503/1-747 GDINISIPDT VEAHRQNSKR QSQERDGYQE EIQLLNKAYR KREEESKDN