KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:19 2014 Check: 00 .. Name: BACU008173/1-342 Len: 463 Check: 3691 Weight: 1.00 Name: ENSP00000258455/1-396 Len: 463 Check: 9896 Weight: 1.00 Name: ENSBTAP00000008093/1-396 Len: 463 Check: 9560 Weight: 1.00 Name: bmy_08576T0/1-427 Len: 463 Check: 9373 Weight: 1.00 Name: ENSTTRP00000013820/1-396 Len: 463 Check: 8224 Weight: 1.00 // 1 50 BACU008173/1-342 ---------- ---------- ---------- ---------- ---------- ENSP00000258455/1-396 MAAPCVSYGG AVSYRLLLWG RGSLARKQGL WKTAAPELQT NVRSQILRLR ENSBTAP00000008093/1-396 MAAPSVSCGA AVPYRLFLAG RVSFAREQGL WKAAASGLQT GTRCQILRLK bmy_08576T0/1-427 MAALRVSCGA AASYRLFLGG RVSFAREQGL WKAAAAKLQR SPGCQILRLR ENSTTRP00000013820/1-396 MAALRVTCGA AASYGLFLGG RVSFARGQGL WKAAAAKLQR SPGCQILRLR 51 100 BACU008173/1-342 ---------- ---------- ---------- ---------- MMGEDPETFT ENSP00000258455/1-396 HTAFVIPKKN VPTSKRETYT EDFIKKQIEE FNIGKRHLAN MMGEDPETFT ENSBTAP00000008093/1-396 HSPAVTTTKN VAALRRESYT VDFIKKQIEE FNIGKRHLAN MMGEDPETFT bmy_08576T0/1-427 HTTVVTTRKN VAALRRETYT VDFIKKQIEE FNIGKRHLAN MMGEDPETFT ENSTTRP00000013820/1-396 HTTVVTTRKN VAVLRRETYT VDFIKKQIEE FNIGKRHLAN MMGEDPETFT 101 150 BACU008173/1-342 QEDIDRAIAY LFPSGLIEKR ARPITKHPEE IFPKQTAIQW GEDGRPFHFL ENSP00000258455/1-396 QEDIDRAIAY LFPSGLFEKR ARPVMKHPEQ IFPRQRAIQW GEDGRPFHYL ENSBTAP00000008093/1-396 QEDVDRAITY LFPSGLFEKR ARPIMKHPEE IFPKQRAVQW GEDGRPFHFL bmy_08576T0/1-427 QEDIDRAIAY LFPSGLFEKR ARPVMKHPEE IFPKQRAIQW GEDGRPFHFL ENSTTRP00000013820/1-396 QEDIDRAIAY LFPSGLFEKR ARPVMKHPEE IFPKQRXXXX XXXGRPFHFL 151 200 BACU008173/1-342 FYTGKQSYYS LMRGAYGKLL DVENRQDQLR AKGLFSEKTK AKDPTGSRWL ENSP00000258455/1-396 FYTGKQSYYS LMHDVYGMLL NLEKHQSHLQ AKSLLPEKTV TRDVIGSRWL ENSBTAP00000008093/1-396 FYTGKQSYYS LMHEAYGKVL HAEERQDQLR AKGLFSEKSK SKDLIGSRWL bmy_08576T0/1-427 FYTGKQSYYS LMHGAYGKLL DVENRQDQLR AKGLFSEKTK AKEPIGSRWL ENSTTRP00000013820/1-396 FYTGKQSYYS LMHXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDPIGSRWL 201 250 BACU008173/1-342 IKEELEETLV KKLSDQDYAQ FLRLLERLLA LPCDAAEEEF VSRFRRSVTI ENSP00000258455/1-396 IKEELEEMLV EKLSDLDYMQ FIRLLEKLLT SQCGAAEEEF VQRFRRSVTL ENSBTAP00000008093/1-396 IKEELEEMLV EKLSDQDYAQ FIRLLERLSA LPCDAAEEEF VGRFRRTVTV bmy_08576T0/1-427 IKEELEEMLV EKLSDQDYAQ FIRLLERLSA LPCDAAEEEF VGRFRRSVTI ENSTTRP00000013820/1-396 IKEELEEMLV EKLSDQDYAQ FIRLLERLSA LPCDAAEEEF VGRFRRSVTI 251 300 BACU008173/1-342 QSKKQLIDPL QYDEKGMAFS TVQGNRKTAE AEVAVYDCGS GRIEVNGVDY ENSP00000258455/1-396 ESKKQLIEPV QYDEQGMAFS KSEGKRKTAK AEAIVYKHGS GRIKVNGIDY ENSBTAP00000008093/1-396 QSKKHLIEPL QYDEQGMAFS TGQGKRKTAN AEAVVYGHGS GKIEINGVDY bmy_08576T0/1-427 QSKKQLIEPV QYDEKGMAFS TGRGNRKTAK AEVAVYDHGS GRIEVNGVDY ENSTTRP00000013820/1-396 QSKKQLIEPL QYDEKGMAFS TGQGNRKTAK AKVTVYDHGS GRIEVNGVDY 301 350 BACU008173/1-342 LLYFPVTQD- ---------- ---------- ---------- REQLTFPFHF ENSP00000258455/1-396 QLYFPITQD- ---------- ---------- ---------- REQLMFPFHF ENSBTAP00000008093/1-396 LLYFPVTQD- ---------- ---------- ---------- REQLMFPFHF bmy_08576T0/1-427 LLYFPVTQDS VGLNKRPECE QPVKLCIFAV NLTLPLVLCL REQLMFPFHF ENSTTRP00000013820/1-396 LLYFPVTQD- ---------- ---------- ---------- REQLMFPFHF 351 400 BACU008173/1-342 LYRLGEHHVT CAVSGGGADG RRRRRPSTWR RREPCAVLSP RTRSSGCAKR ENSP00000258455/1-396 VDRLGKHDVT CTVSGGG--- -RSAQAGAIR LAMAKALCSF VTEDEVEWMR ENSBTAP00000008093/1-396 LDRLGKHDVT CTVSGGG--- -RSSQAGAIR LAMSRALCSF ITEDEVEWMR bmy_08576T0/1-427 LDRLGQHDVT CTVSGGG--- -RAAQAGAIR LATARALCSF VTEDEVEWMR ENSTTRP00000013820/1-396 LDRLGEHDVT CTVSGGG--- -RAAQAGAIR LATARALCSF VTEDEVEWMR 401 450 BACU008173/1-342 DCLLLIPVSE SGRSQARREP AGSSPGRSAE FSGQERRGTL CTWHVADAQE ENSP00000258455/1-396 QAGLL---TT DPRVRERKKP ---------- --GQEGARRK FTWKKR---- ENSBTAP00000008093/1-396 QAGLL---TT DPRVRERKKP ---------- --GQEGARRK FTWKKR---- bmy_08576T0/1-427 QAGLL---TA DPRVRERKKP ---------- --GQEGARRK FTWKKR---- ENSTTRP00000013820/1-396 QAGLL---TA DPRVRERKKP ---------- --GQEGARRK FTWKKR---- 451 500 BACU008173/1-342 TLAGQGEAAP SDV ENSP00000258455/1-396 ---------- --- ENSBTAP00000008093/1-396 ---------- --- bmy_08576T0/1-427 ---------- --- ENSTTRP00000013820/1-396 ---------- ---