KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:21 2014 Check: 00 .. Name: bmy_02475T0/1-968 Len: 1483 Check: 6145 Weight: 1.00 Name: ENSP00000317272/1-1408 Len: 1483 Check: 3769 Weight: 1.00 Name: ENSTTRP00000006209/1-1403 Len: 1483 Check: 2762 Weight: 1.00 Name: BACU016477/1-1409 Len: 1483 Check: 6980 Weight: 1.00 Name: ENSBTAP00000008102/1-1384 Len: 1483 Check: 7639 Weight: 1.00 // 1 50 bmy_02475T0/1-968 ---------- ---------- ---------- ---------- ---------- ENSP00000317272/1-1408 MKAPAVLAPG ILVLLFTLVQ RSNGECKEAL AKSEMNVNMK YQLPNFTAET ENSTTRP00000006209/1-1403 MKAPAVLAPG ILVLLFTLVQ KSNGECKEAL VKSKMNVNMQ YQLPNFTAET BACU016477/1-1409 MKAPAVLAPG ILVLLFTLVQ KSNGECKEAL VKSKMNLNMQ YQLPNFTAET ENSBTAP00000008102/1-1384 MKAPAVLAPG ILVLLFTFVQ KSNGECKEAL VKSRMNVNMQ YQLPNFTAET 51 100 bmy_02475T0/1-968 ---------- --------MA EISSDRD--- ------G--- ---------- ENSP00000317272/1-1408 PIQNVILHEH HIFLGATNYI YVLNEEDLQK VAEYKTGPVL EHPDCFPCQD ENSTTRP00000006209/1-1403 PIQNVVSHKH HIYLGAINYL YVLNDKDLQK VAEYKTGPVL EHPDCFPCQN BACU016477/1-1409 PIQNVVSHKH HIYLGAINYL YVLNDKDLQK VAEYKTGPVL EHPDCFPCQN ENSBTAP00000008102/1-1384 SIQNVVLHKH HIYLGAINYI YVLNDKDLQK VAEYKTGPVL EHPDCFPCQD 101 150 bmy_02475T0/1-968 ---------- ------NTAL L--------- ---------- ---------- ENSP00000317272/1-1408 CSSKANLSGG VWKDNINMAL VVDTYYDDQL ISCGSVNRGT CQRHVFPHNH ENSTTRP00000006209/1-1403 CSHKANLSGG VWKDNINMAL LVDTYYDDQL ISCGSVHRGT CQRHVLPPDN BACU016477/1-1409 CSHKANLSGG VWKDNINMAL LVDTYYDDQL ISCGSVHRGT CQRHVLPPDS ENSBTAP00000008102/1-1384 CSHKANLSGG VWKDNINMAL LVDTYYDDQL ISCGSVHRGT CQRHVLPPNN 151 200 bmy_02475T0/1-968 ---------- ---------- -QCPKAA--- ---------- ---------- ENSP00000317272/1-1408 TADIQSEVHC IFSPQI-EEP SQCPDCVVSA LGAKVLSSVK DRFINFFVGN ENSTTRP00000006209/1-1403 TANIQSEVHC MYSPQADEEP SQCPDCVVSA LGTKVLLSEK DRFINFFVGN BACU016477/1-1409 TANIQSEVHC MYSPQADEEP SQCPDCVVSA LGTKVLLSEK DRFINFFVGN ENSBTAP00000008102/1-1384 TADIESEVHC MYSPQADEET NQCPDCVVSA LGTKVLLSEK DRFINFFVGN 201 250 bmy_02475T0/1-968 ---------- ---------- ---------- -------VVP E--------- ENSP00000317272/1-1408 TINSSYFPDH PLHSISVRRL KETKDGFMFL TDQSYIDVLP EFRDSYPIKY ENSTTRP00000006209/1-1403 TINSSYLPDH SLHSISVRRL KETQDGFKFL TDQSYIDVLP EFRDSYPIKY BACU016477/1-1409 TINSSYLPDH SLHSISVRRL KETQDGFKFL TDQSYIDVLP EFRDSYPIKY ENSBTAP00000008102/1-1384 TINSSYLPDY ILHSISVRRL KETQDGFKFL TDQSYIDVLP ELRDSYPIKY 251 300 bmy_02475T0/1-968 -NCFSPATFT F--TPKHETF GF-------- ---------- ---------- ENSP00000317272/1-1408 VHAFESNNFI YFLTVQRETL DAQTFHTRII RFCSINSGLH SYMEMPLECI ENSTTRP00000006209/1-1403 VHAFESNHFI YFLTVQRETL DAQTFHTRII RFCSVDSGLH SYMEMPLECI BACU016477/1-1409 VHAFESNHFI YFLTVQRETL DAQTFHTRII RFCSVDSGLH SYMEMPLECI ENSBTAP00000008102/1-1384 VHAFESNHFI YFLTVQRETL DAQTFHTRII RFCSADSGLH SYMEMPLECI 301 350 bmy_02475T0/1-968 ----KRSTSG KET------- -----PGSGS VVVLPAGRNP T--------- ENSP00000317272/1-1408 LTEKRKKRST KKEVFNILQA AYVSKPGAQL ARQIGASLND DILFGVFAQS ENSTTRP00000006209/1-1403 LTEKRRKRST REEVFNILQA AYVSKPGTQL AKQIGANLND DILYGVFAQS BACU016477/1-1409 LTEKRRKRST REEVFNILQA AYVSKPGTQL AKQIGANLND DILYGVFAQS ENSBTAP00000008102/1-1384 LTEKRRKRST KQEVFNILQA AYVSKPGAQL ARQIGASLND DILYGVFAQS 351 400 bmy_02475T0/1-968 ------PTSH QELC------ ---------- ---------- ---------- ENSP00000317272/1-1408 KPDSAEPMDR SAMCAFPIKY VNDFFNKIVN KNNVRCLQHF YGPNHEHCFN ENSTTRP00000006209/1-1403 KPDSVEPMNR SAVCAFPVKY VNEFFNKIVN KNNVRCLQHF YGPNHDHCFN BACU016477/1-1409 KPDSVEPMNR SAVCAFPVKY VNEFFNKIVN KNNVRCLQHF YGPNHEHCFN ENSBTAP00000008102/1-1384 KPDSSEPMNR SAVCAFPVKY VNEFFNKIVN KNNVRCLQHF YGPNHEHCFN 401 450 bmy_02475T0/1-968 ---------- ---------- --------TL LRNSSGCEVR SDEYRTEFTT ENSP00000317272/1-1408 R--------- ---------- --------TL LRNSSGCEAR RDEYRTEFTT ENSTTRP00000006209/1-1403 R--------- ---------- --------TL LRNSSGCEVR SDEYRTEFTT BACU016477/1-1409 RSSVANTWDP THQKNLCFLG MEGIVLLPTL LRNSSGCEVR SDEYRTEFTT ENSBTAP00000008102/1-1384 R--------- ---------- --------TL LRNSSGCEVR NDEYRTEFTT 451 500 bmy_02475T0/1-968 ALQRVDLFMG QFNQVLLTSI STFIKGDLTI ANLGTSEGRF MQVVVSRSGS ENSP00000317272/1-1408 ALQRVDLFMG QFSEVLLTSI STFIKGDLTI ANLGTSEGRF MQVVVSRSGP ENSTTRP00000006209/1-1403 ALQRVDLFMG QFNQVLLTSI STFIKGDLTI ANLGTSEGRF MQVVVSRSGS BACU016477/1-1409 ALQRVDLFMG QFNQVLLTSI STFIKGDLTI ANLGTSEGRF MQVVVSRSGS ENSBTAP00000008102/1-1384 ALPRVDLFTG QFNQVLLTSI STFIKGDLTI ANLGTSEGRF MQVVVSRSGS 501 550 bmy_02475T0/1-968 LTPHVNFRLD SHPVSPEAIV EHPLNQNGYT LVVTGKKITK IPLNGLGCEH ENSP00000317272/1-1408 STPHVNFLLD SHPVSPEVIV EHTLNQNGYT LVITGKKITK IPLNGLGCRH ENSTTRP00000006209/1-1403 LTPHVNFLLD SHPVSPEAIV ENPLNQNGYT LVVTGKKITK IPLNGLGCEH BACU016477/1-1409 LTPHVNFRLD SHPVSPEAIV VHPLNQNGYT LVVTGKKITK IPLNGLGCEH ENSBTAP00000008102/1-1384 LTPHVNFHLD SHPVSPEVIV EHPLNQNGYT LVVTGKKITK IPLNGLGCEH 551 600 bmy_02475T0/1-968 FQSCSQCLSA PSFVQCGWCH DKCVRLEECP GGTWTQETCL PTIYKVFPTS ENSP00000317272/1-1408 FQSCSQCLSA PPFVQCGWCH DKCVRSEECL SGTWTQQICL PAIYKVFPNS ENSTTRP00000006209/1-1403 FQSCSQCLSA PSFVQCGWCH DKXXXXXXXX XXXXXXXXXX XXXXXVFPTS BACU016477/1-1409 FQSCGQCLAA PSFVQCGWCH DECVRSEECA GGTWTQETCL PTIYKVFPTS ENSBTAP00000008102/1-1384 FQSCSQCLSA PSFVQCGWCH DKCVRLEECS SGTWTQETCL PTIYKVFPTS 601 650 bmy_02475T0/1-968 APLEGGTTLT ICGWDFGFKR NNKFDLKKTK VLLGNESCTL TLSESTINML ENSP00000317272/1-1408 APLEGGTRLT ICGWDFGFRR NNKFDLKKTR VLLGNESCTL TLSESTMNTL ENSTTRP00000006209/1-1403 APLEGGTTLT ICGWDFGFKR NNKFDLKKTK VLLGNESCTL TLSESTINML BACU016477/1-1409 APLEGGTTLT ICGWDFGFKR NNKFDLKKTK VLLGNESCTL TLSESTINML ENSBTAP00000008102/1-1384 APLEGGTTLT VCGWDFGFKR NNKFDLKKTR VLLGNESCTL TLTESTTNML 651 700 bmy_02475T0/1-968 KCTVGPAMNE HFNMSIVISN SRGTVHYSTF SYVDPIIKSI SPSYGPKTGG ENSP00000317272/1-1408 KCTVGPAMNK HFNMSIIISN GHGTTQYSTF SYVDPVITSI SPKYGPMAGG ENSTTRP00000006209/1-1403 KCTVGPAMNE HFNMSIVISN SRGTVHYSTF SYVDPIITSI SPSYGPKTGG BACU016477/1-1409 KCTVGPAMNE HFNMSIVISN SRGTVHYSTF SYVDPIIKSI SPSYGPKTGG ENSBTAP00000008102/1-1384 KCTVGPAMNE HFNMSIVISN SRGSVEYSAF SYVDPIITSI SPNYGPKTGG 701 750 bmy_02475T0/1-968 TLLTLTGKHL NSGNSRHISI GGKTCTLKSQ DGLICIPNKS RKDCSSFVQR ENSP00000317272/1-1408 TLLTLTGNYL NSGNSRHISI GGKTCTLK-- ---------- ---------- ENSTTRP00000006209/1-1403 TLLTLTGKHL NSGNSRHISI GGKTCTLK-- ---------- ---------- BACU016477/1-1409 TLLTLTGKHL NSGNSRHISI GGKTCTLK-- ---------- ---------- ENSBTAP00000008102/1-1384 TLLTLTGKHL NSGNSRHISI GGKTCTLK-- ---------- ---------- 751 800 bmy_02475T0/1-968 SIFLIFLFSV SDSILECYTP AQSTPTEFPI KLKIDLANRE MNSFIYREDP ENSP00000317272/1-1408 --------SV SNSILECYTP AQTISTEFAV KLKIDLANRE TSIFSYREDP ENSTTRP00000006209/1-1403 --------SV SDSILECYTP AQSTPTEFPI KLKIDLANRE MNSFIYREDP BACU016477/1-1409 --------SV SDSILECYTP AQSTPTEFPI KLKIDLANRE MNSFIYREDP ENSBTAP00000008102/1-1384 --------SV SHSILECYTP AQSAPTEFSV KLKIDLANRE VNSFIYREDP 801 850 bmy_02475T0/1-968 IVYEIHPTKS FV-------- ---------- SGGSTITGVG KNLNSVSILR ENSP00000317272/1-1408 IVYEIHPTKS FISTWWKEPL NIVSFLFCFA SGGSTITGVG KNLNSVSVPR ENSTTRP00000006209/1-1403 IVYEIHPTKS FVST--KEPL NIAIFLFYFA SGGSTITGVG KNLNSVSILR BACU016477/1-1409 IVYEIHPTKS FV-------- ---------- SGGSTITGVG KNLNSVSILR ENSBTAP00000008102/1-1384 IVYEIHPTKS FI-------- ---------- SGGSTITGVG KNLNSVSVLR 851 900 bmy_02475T0/1-968 MVINVHEAGR NFTVACQHRS NSEIICCTTP SLQQLNLQLP LKTKAFFMLD ENSP00000317272/1-1408 MVINVHEAGR NFTVACQHRS NSEIICCTTP SLQQLNLQLP LKTKAFFMLD ENSTTRP00000006209/1-1403 MVINVHEAGR NFTVACQHRS NSEIICCTTP SLQQLNLQLP LKTKAFFMLD BACU016477/1-1409 MVINVHEAGR NFTVACQHRS NSEIICCTTP SLQQLNLQLP LKTKAFFMLD ENSBTAP00000008102/1-1384 MVINVHEAGR NFTVACQHRS NSEIICCTTP SIEQLNLQLP LKTKAFFMLD 901 950 bmy_02475T0/1-968 GIHSKYFDLI YVHNPVFKPF EKPVMISIGN ENVLEIKGND IDPEAVKGEV ENSP00000317272/1-1408 GILSKYFDLI YVHNPVFKPF EKPVMISMGN ENVLEIKGND IDPEAVKGEV ENSTTRP00000006209/1-1403 GIHSKYFDLI YVHNPVFKPF EKPVMISIGS KNVLEIKGND IDPEAVKGEV BACU016477/1-1409 GIHSKYFDLI YVHNPVFKPF EKPVMISIGN ENVLEIKGND IDPEAVKGEV ENSBTAP00000008102/1-1384 GIHSKYFDLI YVHNPVFKPF EKPVMISVGN ENVLEIKGND IDPEAVKGEV 951 1000 bmy_02475T0/1-968 LKVGNKSCEN IHSHSEAVLC TVPNDLLKLN SELNIEVGFL LSSHDVNKDA ENSP00000317272/1-1408 LKVGNKSCEN IHLHSEAVLC TVPNDLLKLN SELNIE---- ---------- ENSTTRP00000006209/1-1403 LKVGNKSCEN IQSLSEAVLC TVPNDLLKLN SELNIE---- ---------- BACU016477/1-1409 LKVGNKSCEN IHSHSEAVLC TVPNDLLKLN SELNIE---- ---------- ENSBTAP00000008102/1-1384 LKVGNKSCEN IHSHSEAVLC TVPSDLLKLN SELNIE---- ---------- 1001 1050 bmy_02475T0/1-968 SWKQAISSTV LGKVIVQPDQ NFTGLIVGVV SISIILLLLL GLFLWLKKRK ENSP00000317272/1-1408 -WKQAISSTV LGKVIVQPDQ NFTGLIAGVV SISTALLLLL GFFLWLKKRK ENSTTRP00000006209/1-1403 -WKQAISSTV LGKVIVQPDQ NFTGLIVGVV SISIILLLLL GLFLWLKKRK BACU016477/1-1409 -WKQAISSTV LGKVIVQPDQ NFTGLIVGVV SISIILLLLL GLFLWLKKRK ENSBTAP00000008102/1-1384 -WKQAISSTV LGKVIVQPDQ NFTGLIVGVV SISIILLLLL GLFLWLKKRK 1051 1100 bmy_02475T0/1-968 QIKDLGSELV RYDARVHTPH LDRLVSARSV SPTTEMVSNE SVDYRATFPE ENSP00000317272/1-1408 QIKDLGSELV RYDARVHTPH LDRLVSARSV SPTTEMVSNE SVDYRATFPE ENSTTRP00000006209/1-1403 QIKDLGSELV RYDARVHTPH LDRLVSARSV SPTTEMVSNE SVDYRATFPE BACU016477/1-1409 QIKDLGSELV RYDARVHTPH LDRLVSARSV SPTTEMVSNE SVDYRATFPE ENSBTAP00000008102/1-1384 QIKDLGSELV RYDARVHTPH LDRLVSARSV SPTTEMVSNE SVDYRATFPE 1101 1150 bmy_02475T0/1-968 DQFPNSSQNG SCRQVQYPLT DLSPILTSGD SDISSPLLQN TVHIDLSALN ENSP00000317272/1-1408 DQFPNSSQNG SCRQVQYPLT DMSPILTSGD SDISSPLLQN TVHIDLSALN ENSTTRP00000006209/1-1403 DQFPNSSQNG SCRQVQYPLT DLSPILTSGD SDISSPLLQN TVHIDLSALN BACU016477/1-1409 DQFPNSSQNG SCRQVQYPLT DLSPILTSGD SDISSPLLQN AVHIDLSALN ENSBTAP00000008102/1-1384 DQFPNASQNG SCRQVQYPLT DLSPILTSGD SDISSPLLQN TVHIDLSALN 1151 1200 bmy_02475T0/1-968 PELVQAVQHV VIGPSSLIVH FNEVIGRGHF GCVYHGTLLD NDDKKIHCAV ENSP00000317272/1-1408 PELVQAVQHV VIGPSSLIVH FNEVIGRGHF GCVYHGTLLD NDGKKIHCAV ENSTTRP00000006209/1-1403 PELVQAVQHV VIGPSSLIVH FNEVIGRGHF -CVYHGTL-- DNDDEIHCAV BACU016477/1-1409 PELVQAVQHV VIGPSSLIVH FNEVIGRGHF GCVYHGTLLD NDDKKIHCAV ENSBTAP00000008102/1-1384 PELVQAVQHV VIGPSSLIVH FNEVIGRGHF GCVYHGTLLD NDDKKIHCAV 1201 1250 bmy_02475T0/1-968 KSLNTYNNLS PLITALS--- ---------- ITFDKVRQR- ---------F ENSP00000317272/1-1408 KSLNRITDIG EVSQFLTEGI IMKDFSHPNV LSLLGICLRS EGSPLVVLPY ENSTTRP00000006209/1-1403 K-LNRITDIG EVSQFLTEGI IMKDFSHPNV LSLLGICLRS EGSPLVVLPY BACU016477/1-1409 KSLNRITDIG EVSQFLTEGI IMKDFSHPNV LSLLGICLRS EGSPLVVLPY ENSBTAP00000008102/1-1384 KSLNRITDIG EVSQFLTEGI IMKDFSHPNV LSLLGICLRS EGSPLVVLPY 1251 1300 bmy_02475T0/1-968 FSDWILRNFS SDKASEP--- ---------- --------EA WPHRPVTNSN ENSP00000317272/1-1408 MKHGDLRNFI RNETHNPTVK DLIGFGLQVA KGMKYLASKK FVHRDLAARN ENSTTRP00000006209/1-1403 MKHGDLRNFI RNETHNPTVK DLIGFGLQVA KGMKYLASKK FVHRDLAARN BACU016477/1-1409 MKHGDLRNFI RNETHNPTVK DLIGFGLQVA KGMKYLASKK FVHRDLAARN ENSBTAP00000008102/1-1384 MKHGDLRNFI RNETHNPTVK DLIGFGLQVA KGMEYLASKK FVHRDLAARN 1301 1350 bmy_02475T0/1-968 ---------- ---------- -PATVMTLLS HSGQNLKAGL KFLKIRIPPD ENSP00000317272/1-1408 CMLDEKFTVK VADFGLARDM YDKEYYSVHN KTGAKLPVKW MALESLQTQK ENSTTRP00000006209/1-1403 CXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016477/1-1409 CMLDEKFTVK VADFGLARDV YDKEYYSVHN KTGAKLPVKW MALESLQTQK ENSBTAP00000008102/1-1384 CMLDEKFTVK VADFGLARDV YDKEYYSVHN KTGAKLPVKW MALESLQTQK 1351 1400 bmy_02475T0/1-968 FI-----WGT EAMHFEGFLI TENSK----- ---------- ---------- ENSP00000317272/1-1408 FTTKSDVWSF GVLLWE--LM TRGAPPYPDV NTFDITVYLL QGRRLLQPEY ENSTTRP00000006209/1-1403 XXXXXXXWSF GVLLWE--LM TRGAPPYPDV NTFDITVYLL QGRRLLQPEY BACU016477/1-1409 FTTKSDVWSF GVLLWE--LM TRGAPPYPDV NTFDITVYLL QGRRLLQPEY ENSBTAP00000008102/1-1384 FTTKSDVWSF GVLLWE--LM TRGAPPYPDV NTFDITVYLL QGRRLLQPEY 1401 1450 bmy_02475T0/1-968 ------EVVM -SRTDMAALG PGRS------ ---FRIKVTQ HVFKAK--YI ENSP00000317272/1-1408 CPDPLYEVML KCWHPKAEMR PSFSELVSRI SAIFSTFIGE HYVHVNATYV ENSTTRP00000006209/1-1403 CPDPLYEVML KCWHPKAELR PSFSELVSRI STIFSAFIGE HYVHVNATYV BACU016477/1-1409 CPDPLYEVML KCWHPKAELR PSFSELVSRI SAIFSTFIGE HYVHVNATYV ENSBTAP00000008102/1-1384 CPDPLYEVML KCWHPKAELR PSFSELVSRI SVIFSTFIGE HYVHVNATYV 1451 1500 bmy_02475T0/1-968 ---------- ---------- ---------- --- ENSP00000317272/1-1408 NVKCVAPYPS LLSSEDNADD EVDTRPASFW ETS ENSTTRP00000006209/1-1403 NVKCVAPYPS LLSSQDNVDG EGDTPPAPFE ALL BACU016477/1-1409 NVKCVAPYPS LLSSQDNVDG EGDT------ --- ENSBTAP00000008102/1-1384 NVKCVAPYPS LLSSQDNVSG EDDDDT---- ---